Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010738

Physical Location & Seq

Genomic Coordinates Reverse (-)

10700091 .. 10701325

Gene Structure 1235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGCTTGTGTGGGATGACAGAACTTCAGTGAAGTTGCTAAAGAGAGATGGAGTGATGGCTACTCATGATGAAGACACTGAAAGTTACTTCCACAACACAGCGGTTCATTGCGTGTTGTGTCCCCGAAACCCTGACAACGGGAATAGCATTGTCAATGATTTACAGGTGTCCACCATGTTTACGCATCACCAGAAGATTGTCGTGGTGGACAGTGAATTGCCTAAGGGAGGAGGGTTGGAAAAGAGGAGGATTGTGAGCTTCATTGGTGGCATTGATCTTTGTGATGGAAGATATGACACACCTTCACATCCCATTTTCAGGACTTTAGACACAACACACAAGAATGATCTCCATCAGCCTAATTTTGGGGGCGTTGATCGATCACAAAAGCAAGGTGGGAAGGACTTGCTTGTTGAACTCAGAGAGCTTGATGACACATTTATACCACCTTCTCCGGTTATGTCCCCTCAAGACCATGATACATGGAATGTTCAGCTGTTTCGCTCCATCGATGGAGGAGCTGCATTTGGATTCCCTGACTCCCCCGAAGATGCTGCCAAGGCAGGCCTTGTCACCGGGAAAAATCACGTGATTGATCGAAGCATTCAGGATGATTACATCAATGCCATTCGGTGCGCGAAGTCTTTTATCTACATCGAAAATCAGTACTTTCTTGGAAGCTCTTTTGGATGGCATTCGGATTATGTTACCCTAAAAGTTAAGGAGGTTGGTGCTTTGCATCTGATCCCAAAGGAACTGTCACTAAAGATTGTTAGTAAGATTGAAGCTGGAGAAAGATTTACGGTTTACATTGTGATGCCAATGTGGCCAGAGGGCATTCCGGAAAGCCAAACCGCTCAGGCAATGTTGCATTGGCAGAGGATGACGATGGACATGATGTATAGGGACATTGTTCAAACTCTCAAAGTCAAGGGGATTGAGGCAAACCCTAAGGATTATTTGGCATTCTTTTGCCTTGGTAACCACGAGAAGAAGCTACCCGGAGAATATGAACCTCCGGAAAAACCAGAACATGGATCAGATTACAGTCGAGCACAACAAGCAAGGCGGTTCATGATCTATGTTCATGCCAAGGTGATGATAGGTAGGCCAATCTTATATCACATTCTTCTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

380

Amino Acids

43.04

Weight (kDa)

6.09

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25370 AT5G25370 AT5G25370 AT5G25370
fragaria_vesca	FvH4_1g03170
malus_domestica	MD02G1030700.v1.1 MD15G1172300.v1.1
prunus_persica	Prupe.7G243800_v2.0.a1
pyrus_communis	pycom02g02560 pycom15g15370
rosa_chinensis	RchiOBHm_Chr2g0088301
rosa_laevigata	RLG00000015940
rosa_multiflora	Rmu_sc0004235.1_g000036
rosa_roxburghii	Rroxscaffold_2G00152760
rosa_rugosa	Rorug01G0482700
rosa_samantha	Rh2AG037800 Rh2BG037000 Rh2CG038100 Rh2DG037500
rosa_wichuraiana	Rw2G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1034
AccBSI	CCGCTC	1 cut(s)	857
AccII	CGCG	1 cut(s)	638
AccIII	TCCGGA	2 cut(s)	841, 1018
AciI	CCGC	3 cut(s)	101, 855, 1069
AclWI	GGATC	2 cut(s)	739, 1045
AcoI	YGGCCR	1 cut(s)	827
AcuI	CTGAAG	1 cut(s)	9
AcvI	CACGTG	1 cut(s)	589
AfaI	GTAC	1 cut(s)	668
AfiI	CCNNNNNNNGG	5 cut(s)	137, 227, 318, 365, 1034
AgsI	TTSAA	3 cut(s)	416, 785, 917
AluBI	AGCT	7 cut(s)	258, 427, 496, 521, 681, 788, 997
AluI	AGCT	7 cut(s)	258, 427, 496, 521, 681, 788, 997
Alw21I	GWGCWC	1 cut(s)	1057
AlwI	GGATC	2 cut(s)	739, 1045
Aor13HI	TCCGGA	2 cut(s)	841, 1018
AoxI	GGCC	3 cut(s)	565, 827, 1109
ApeKI	GCWGC	2 cut(s)	521, 554
ArsI	GACNNNNNNTTYG	2 cut(s)	743, 775
AspLEI	GCGC	1 cut(s)	638
AsuC2I	CCSGG	2 cut(s)	577, 1002
AsuHPI	GGTGA	3 cut(s)	179, 565, 1108
AxyI	CCTNAGG	2 cut(s)	222, 951
BalI	TGGCCA	1 cut(s)	829
BauI	CACGAG	1 cut(s)	986
BbrPI	CACGTG	1 cut(s)	589
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	1057
BbvI	GCAGC	2 cut(s)	508, 541
BccI	CCATC	8 cut(s)	41, 49, 278, 360, 506, 515, 684, 883
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BcnI	CCSGG	2 cut(s)	577, 1002
BglI	GCCNNNNNGGC	1 cut(s)	826
BisI	GCNGC	2 cut(s)	522, 555
BlsI	GCNGC	2 cut(s)	523, 556
BmcAI	AGTACT	1 cut(s)	668
Bme1390I	CCNGG	2 cut(s)	577, 1002
BmrFI	CCNGG	2 cut(s)	577, 1002
BmsI	GCATC	4 cut(s)	193, 541, 748, 807
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	810
Bpu10I	CCTNAGC	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	453
BpuMI	CCSGG	2 cut(s)	577, 1002
Bsa29I	ATCGAT	2 cut(s)	379, 510
BsaAI	YACGTR	1 cut(s)	589
BsaBI	GATNNNNATC	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	558, 976, 1092
BsaWI	WCCGGW	3 cut(s)	454, 841, 1018
Bsc4I	CCNNNNNNNGG	5 cut(s)	137, 227, 318, 365, 1034
Bse21I	CCTNAGG	2 cut(s)	222, 951
Bse3DI	GCAATG	2 cut(s)	106, 870
Bse8I	GATNNNNATC	1 cut(s)	351
BseAI	TCCGGA	2 cut(s)	841, 1018
BseCI	ATCGAT	2 cut(s)	379, 510
BseDI	CCNNGG	3 cut(s)	558, 976, 1092
BseGI	GGATG	5 cut(s)	19, 307, 616, 695, 888
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	5 cut(s)	137, 227, 318, 365, 1034
BseMI	GCAATG	2 cut(s)	106, 870
BseMII	CTCAG	2 cut(s)	433, 872
BseRI	GAGGAG	3 cut(s)	243, 259, 531
BseXI	GCAGC	2 cut(s)	508, 541
Bsh1236I	CGCG	1 cut(s)	638
BshFI	GGCC	3 cut(s)	567, 829, 1111
BshVI	ATCGAT	2 cut(s)	379, 510
BsiHKAI	GWGCWC	1 cut(s)	1057
BsiSI	CCGG	5 cut(s)	455, 576, 842, 1002, 1019
BslFI	GGGAC	3 cut(s)	105, 448, 920
BslI	CCNNNNNNNGG	5 cut(s)	137, 227, 318, 365, 1034
BsmFI	GGGAC	3 cut(s)	105, 448, 920
BsmI	GAATGC	4 cut(s)	603, 694, 837, 965
BsnI	GGCC	3 cut(s)	567, 829, 1111
Bsp1286I	GDGCHC	1 cut(s)	1057
Bsp13I	TCCGGA	2 cut(s)	841, 1018
Bsp143I	GATC	8 cut(s)	274, 346, 376, 380, 595, 744, 1037, 1077
BspACI	CCGC	3 cut(s)	101, 855, 1069
BspANI	GGCC	3 cut(s)	567, 829, 1111
BspCNI	CTCAG	2 cut(s)	432, 871
BspDI	ATCGAT	2 cut(s)	379, 510
BspEI	TCCGGA	2 cut(s)	841, 1018
BspFNI	CGCG	1 cut(s)	638
BspHI	TCATGA	2 cut(s)	64, 1074
BspPI	GGATC	2 cut(s)	739, 1045
BsrBI	CCGCTC	1 cut(s)	857
BsrDI	GCAATG	2 cut(s)	106, 870
BssECI	CCNNGG	3 cut(s)	558, 976, 1092
BssMI	GATC	8 cut(s)	274, 346, 376, 380, 595, 744, 1037, 1077
BssSI	CACGAG	1 cut(s)	986
BssT1I	CCWWGG	3 cut(s)	558, 976, 1092
Bst2BI	CACGAG	1 cut(s)	986
Bst4CI	ACNGT	4 cut(s)	212, 759, 805, 1049
BstBAI	YACGTR	1 cut(s)	589
BstC8I	GCNNGC	1 cut(s)	565
BstDEI	CTNAG	4 cut(s)	222, 419, 858, 951
BstEII	GGTNACC	1 cut(s)	980
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstF5I	GGATG	5 cut(s)	19, 307, 616, 695, 888
BstFNI	CGCG	1 cut(s)	638
BstHHI	GCGC	1 cut(s)	638
BstKTI	GATC	8 cut(s)	277, 349, 379, 383, 598, 747, 1040, 1080
BstMBI	GATC	8 cut(s)	274, 346, 376, 380, 595, 744, 1037, 1077
BstMWI	GCNNNNNNNGC	3 cut(s)	560, 826, 1061
BstPI	GGTNACC	1 cut(s)	980
BstSCI	CCNGG	2 cut(s)	575, 1000
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	2 cut(s)	508, 541
BstV2I	GAAGAC	1 cut(s)	78
Bsu15I	ATCGAT	2 cut(s)	379, 510
Bsu36I	CCTNAGG	2 cut(s)	222, 951
BsuRI	GGCC	3 cut(s)	567, 829, 1111
BsuTUI	ATCGAT	2 cut(s)	379, 510
BtsCI	GGATG	5 cut(s)	19, 307, 616, 695, 888
BtsIMutI	CAGTG	3 cut(s)	33, 75, 217
Cac8I	GCNNGC	1 cut(s)	565
CciI	TCATGA	2 cut(s)	64, 1074
CfoI	GCGC	1 cut(s)	638
ClaI	ATCGAT	2 cut(s)	379, 510
Csp6I	GTAC	1 cut(s)	667
CviAII	CATG	8 cut(s)	65, 175, 476, 483, 895, 1034, 1075, 1088
CviQI	GTAC	1 cut(s)	667
DdeI	CTNAG	4 cut(s)	222, 419, 858, 951
DpnI	GATC	8 cut(s)	276, 348, 378, 382, 597, 746, 1039, 1079
DpnII	GATC	8 cut(s)	274, 346, 376, 380, 595, 744, 1037, 1077
EaeI	YGGCCR	1 cut(s)	827
Eco130I	CCWWGG	3 cut(s)	558, 976, 1092
Eco147I	AGGCCT	1 cut(s)	567
Eco57I	CTGAAG	1 cut(s)	9
Eco72I	CACGTG	1 cut(s)	589
Eco81I	CCTNAGG	2 cut(s)	222, 951
Eco91I	GGTNACC	1 cut(s)	980
EcoNI	CCTNNNNNAGG	1 cut(s)	225
EcoO65I	GGTNACC	1 cut(s)	980
EcoT14I	CCWWGG	3 cut(s)	558, 976, 1092
ErhI	CCWWGG	3 cut(s)	558, 976, 1092
FaeI	CATG	8 cut(s)	68, 178, 479, 486, 898, 1037, 1078, 1091
FaqI	GGGAC	3 cut(s)	105, 448, 920
FatI	CATG	8 cut(s)	64, 174, 475, 482, 894, 1033, 1074, 1087
Fnu4HI	GCNGC	2 cut(s)	522, 555
FokI	GGATG	5 cut(s)	26, 294, 623, 702, 895
Fsp4HI	GCNGC	2 cut(s)	522, 555
GlaI	GCGC	1 cut(s)	637
GluI	GCNGC	2 cut(s)	522, 555
GsuI	CTGGAG	1 cut(s)	810
HaeIII	GGCC	3 cut(s)	567, 829, 1111
HapII	CCGG	5 cut(s)	455, 576, 842, 1002, 1019
HhaI	GCGC	1 cut(s)	638
Hin1II	CATG	8 cut(s)	68, 178, 479, 486, 898, 1037, 1078, 1091
Hin6I	GCGC	1 cut(s)	636
HinP1I	GCGC	1 cut(s)	636
HinfI	GANTC	2 cut(s)	531, 539
HpaII	CCGG	5 cut(s)	455, 576, 842, 1002, 1019
HphI	GGTGA	3 cut(s)	179, 565, 1108
Hpy166II	GTNNAC	4 cut(s)	171, 180, 208, 808
Hpy188I	TCNGA	4 cut(s)	422, 700, 744, 1042
Hpy188III	TCNNGA	7 cut(s)	65, 319, 470, 608, 842, 1019, 1075
Hpy8I	GTNNAC	4 cut(s)	171, 180, 208, 808
HpyAV	CCTTC	3 cut(s)	312, 394, 459
HpyCH4III	ACNGT	4 cut(s)	212, 759, 805, 1049
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	3 cut(s)	524, 739, 871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	560, 826, 1061
HpyF3I	CTNAG	4 cut(s)	222, 419, 858, 951
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	8 cut(s)	68, 178, 479, 486, 898, 1037, 1078, 1091
HspAI	GCGC	1 cut(s)	636
Kpn2I	TCCGGA	2 cut(s)	841, 1018
Kzo9I	GATC	8 cut(s)	274, 346, 376, 380, 595, 744, 1037, 1077
LmnI	GCTCC	2 cut(s)	509, 518
Lsp1109I	GCAGC	2 cut(s)	508, 541
LweI	GCATC	4 cut(s)	193, 541, 748, 807
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	5 cut(s)	83, 571, 706, 759, 980
MalI	GATC	8 cut(s)	276, 348, 378, 382, 597, 746, 1039, 1079
MbiI	CCGCTC	1 cut(s)	857
MboI	GATC	8 cut(s)	274, 346, 376, 380, 595, 744, 1037, 1077
MboII	GAAGA	6 cut(s)	83, 205, 300, 560, 1003, 1121
MhlI	GDGCHC	1 cut(s)	1057
MlsI	TGGCCA	1 cut(s)	829
MluCI	AATT	3 cut(s)	215, 361, 1135
MluNI	TGGCCA	1 cut(s)	829
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	216
Mox20I	TGGCCA	1 cut(s)	829
MroI	TCCGGA	2 cut(s)	841, 1018
MscI	TGGCCA	1 cut(s)	829
MseI	TTAA	3 cut(s)	720, 1134, 1138
MslI	CAYNNNNRTG	2 cut(s)	342, 815
Msp20I	TGGCCA	1 cut(s)	829
MspA1I	CMGCKG	2 cut(s)	101, 496
MspI	CCGG	5 cut(s)	455, 576, 842, 1002, 1019
MspR9I	CCNGG	2 cut(s)	577, 1002
Mva1269I	GAATGC	4 cut(s)	603, 694, 837, 965
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	3 cut(s)	560, 826, 1061
NciI	CCSGG	2 cut(s)	577, 1002
NdeII	GATC	8 cut(s)	274, 346, 376, 380, 595, 744, 1037, 1077
NlaIII	CATG	8 cut(s)	68, 178, 479, 486, 898, 1037, 1078, 1091
NmuCI	GTSAC	2 cut(s)	571, 759
PacI	TTAATTAA	1 cut(s)	1138
PagI	TCATGA	2 cut(s)	64, 1074
PceI	AGGCCT	1 cut(s)	567
PctI	GAATGC	4 cut(s)	603, 694, 837, 965
PfeI	GAWTC	1 cut(s)	531
PflMI	CCANNNNNTGG	1 cut(s)	1034
PkrI	GCNGC	2 cut(s)	523, 556
PleI	GAGTC	1 cut(s)	533
PmaCI	CACGTG	1 cut(s)	589
PmlI	CACGTG	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	533
Ppu21I	YACGTR	1 cut(s)	589
PspCI	CACGTG	1 cut(s)	589
PspEI	GGTNACC	1 cut(s)	980
PvuII	CAGCTG	1 cut(s)	496
RsaI	GTAC	1 cut(s)	668
RsaNI	GTAC	1 cut(s)	667
RseI	CAYNNNNRTG	2 cut(s)	342, 815
SaqAI	TTAA	3 cut(s)	720, 1134, 1138
SatI	GCNGC	2 cut(s)	522, 555
Sau3AI	GATC	8 cut(s)	274, 346, 376, 380, 595, 744, 1037, 1077
ScaI	AGTACT	1 cut(s)	668
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	2 cut(s)	577, 1002
SduI	GDGCHC	1 cut(s)	1057
SfaNI	GCATC	4 cut(s)	193, 541, 748, 807
SmiMI	CAYNNNNRTG	2 cut(s)	342, 815
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
Sse9I	AATT	3 cut(s)	215, 361, 1135
SseBI	AGGCCT	1 cut(s)	567
SsiI	CCGC	3 cut(s)	101, 855, 1069
StuI	AGGCCT	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	575, 1000
StyI	CCWWGG	3 cut(s)	558, 976, 1092
TaaI	ACNGT	4 cut(s)	212, 759, 805, 1049
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	5 cut(s)	379, 510, 598, 657, 1051
TasI	AATT	3 cut(s)	215, 361, 1135
TatI	WGTACW	1 cut(s)	666
TfiI	GAWTC	1 cut(s)	531
Tru1I	TTAA	3 cut(s)	720, 1134, 1138
Tru9I	TTAA	3 cut(s)	720, 1134, 1138
TscAI	CASTG	3 cut(s)	33, 82, 217
TseFI	GTSAC	2 cut(s)	571, 759
TseI	GCWGC	2 cut(s)	521, 554
Tsp45I	GTSAC	2 cut(s)	571, 759
TspDTI	ATGAA	6 cut(s)	84, 95, 250, 1026, 1063, 1076
TspRI	CASTG	3 cut(s)	33, 82, 217
Van91I	CCANNNNNTGG	1 cut(s)	1034
XagI	CCTNNNNNAGG	1 cut(s)	225
ZrmI	AGTACT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.