Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010738

Physical Location & Seq

Genomic Coordinates Reverse (-)

2809533 .. 2810501

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G002980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAGGCCAAAGATAGTAGACGGAGACTTGACTCTGGGAGAGCTTCTTAAGAAGAAAGCAAAGGAAGGAGTGAAGGTCTTAATGCTTGTATGGGATGACAGAACTTCAGTGAAGGTACTAAAGAAAGATGGACTGATGGCTACTCATGATGAAGATACCGAAAGTTACTTCCATGACAGCGGAGTTCACTGCGTGTTGTGTCCCAGAAACCCTGACAATGGGCAAAGCATTGTTCAAGATATAGAGGTTGGAACAATGTTCACTCATCATCAAAAGATTGTGGTAGTGGACAGTGAATTGCCGAATGGAGCATTAGAAAAGAGGAGGATTGTGAGCTTCATTGGCGGCATTGATCTTTGTGATGGAAGATATGATACTCAGTTTCATCCCCTTTTCAGGACTTTAGGCACAATCCACCATGATGATCTCCATCAACCCAATTTTAATGGTGCCTCAATCGCAAAAGGTGGACCAAGGGAGCCTTGGCATGACATACATTGTAGGCTAGAAGGGCCTATTGCTTGGGATGTTTTATTCAACTTTGAGCAGAGGTGGAGAAAGCAAGGTGTGAAAGACTTACTTTTTCAACTCAGAGATTTTGATCAGACCTTTATACCACCATCTCCGGTTATGTATCCCGAAGACCATGACACATGGAATGTTCAGTTGTTCCGATCCATTGATGGAGGAGCAGCATTCGGATTTCCCAACTCTCCTGAAGATGCTACCAGGGCTGGTCTAGTCAGTGGCAGAGATCATGTGATTGACAGAAGCATTCAGGATGCATATATCAATGCAATTCGTCGAGCAAAGAGTTTTATCTACATCGAAAATCAGTACTTTCTTGGAAGCTCTTTTGGCTGGCAGTCAGATCATAAAGACCTCAAAGTTGAGGAGGTTGGCGCTTTGCATCTTATTCCAAAAGAACTGTCACTAAAGATTGTTAGTAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

318

Amino Acids

36.14

Weight (kDa)

5.91

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLDc	PF00614	86 - 123	3.5e-07	Phospholipase D Active site motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25370 AT5G25370 AT5G25370 AT5G25370
fragaria_vesca	FvH4_1g03170
malus_domestica	MD02G1030700.v1.1 MD15G1172300.v1.1
prunus_persica	Prupe.7G243800_v2.0.a1
pyrus_communis	pycom02g02560 pycom15g15370
rosa_chinensis	RchiOBHm_Chr2g0088301
rosa_laevigata	RLG00000015940
rosa_multiflora	Rmu_sc0004235.1_g000036
rosa_roxburghii	Rroxscaffold_2G00152760
rosa_rugosa	Rorug01G0482700
rosa_samantha	Rh2AG037800 Rh2BG037000 Rh2CG038100 Rh2DG037500
rosa_wichuraiana	Rw2G002980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	449
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	2 cut(s)	180, 345
AclWI	GGATC	1 cut(s)	669
AcuI	CTGAAG	2 cut(s)	90, 738
AdeI	CACNNNGTG	1 cut(s)	193
AfaI	GTAC	2 cut(s)	117, 839
AfiI	CCNNNNNNNGG	2 cut(s)	218, 396
AflII	CTTAAG	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	236, 538, 587
AjnI	CCWGG	1 cut(s)	728
AluBI	AGCT	3 cut(s)	43, 336, 852
AluI	AGCT	3 cut(s)	43, 336, 852
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	669
AoxI	GGCC	2 cut(s)	5, 512
ApeKI	GCWGC	1 cut(s)	692
ArsI	GACNNNNNNTTYG	2 cut(s)	914, 946
AspLEI	GCGC	1 cut(s)	905
AspS9I	GGNCC	2 cut(s)	470, 512
AvaII	GGWCC	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	449
BarI	GAAGNNNNNNTAC	2 cut(s)	358, 390
BbsI	GAAGAC	1 cut(s)	648
BbvI	GCAGC	1 cut(s)	704
BccI	CCATC	6 cut(s)	122, 130, 356, 438, 628, 677
BciT130I	CCWGG	1 cut(s)	730
BciVI	GTATCC	1 cut(s)	645
BclI	TGATCA	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	2 cut(s)	506, 740
BfoI	RGCGCY	1 cut(s)	906
BfrI	CTTAAG	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	645
BisI	GCNGC	2 cut(s)	346, 693
BlsI	GCNGC	2 cut(s)	347, 694
BmcAI	AGTACT	1 cut(s)	839
Bme1390I	CCNGG	1 cut(s)	730
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	2 cut(s)	470, 512
BmiI	GGNNCC	2 cut(s)	451, 480
BmrFI	CCNGG	1 cut(s)	730
BmsI	GCATC	3 cut(s)	712, 772, 919
BpiI	GAAGAC	1 cut(s)	648
BsaBI	GATNNNNATC	2 cut(s)	429, 600
BsaJI	CCNNGG	3 cut(s)	473, 482, 729
BsaWI	WCCGGW	1 cut(s)	625
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 396
Bse8I	GATNNNNATC	2 cut(s)	429, 600
BseBI	CCWGG	1 cut(s)	730
BseDI	CCNNGG	3 cut(s)	473, 482, 729
BseGI	GGATG	4 cut(s)	100, 385, 532, 787
BseJI	GATNNNNATC	2 cut(s)	429, 600
BseLI	CCNNNNNNNGG	2 cut(s)	218, 396
BseMII	CTCAG	2 cut(s)	392, 604
BseRI	GAGGAG	3 cut(s)	337, 702, 908
BseXI	GCAGC	1 cut(s)	704
BshFI	GGCC	2 cut(s)	7, 514
BshNI	GGYRCC	1 cut(s)	449
BsiSI	CCGG	1 cut(s)	626
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	2 cut(s)	218, 396
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	2 cut(s)	695, 774
BsnI	GGCC	2 cut(s)	7, 514
Bsp143I	GATC	6 cut(s)	352, 424, 601, 674, 754, 871
BspACI	CCGC	2 cut(s)	180, 345
BspANI	GGCC	2 cut(s)	7, 514
BspCNI	CTCAG	2 cut(s)	391, 603
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	451, 480
BspPI	GGATC	1 cut(s)	669
BspT107I	GGYRCC	1 cut(s)	449
BspTI	CTTAAG	1 cut(s)	47
BssECI	CCNNGG	3 cut(s)	473, 482, 729
BssMI	GATC	6 cut(s)	352, 424, 601, 674, 754, 871
BssT1I	CCWWGG	2 cut(s)	473, 482
Bst2UI	CCWGG	1 cut(s)	730
Bst4CI	ACNGT	2 cut(s)	293, 930
BstAFI	CTTAAG	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	863
BstDEI	CTNAG	2 cut(s)	378, 590
BstF5I	GGATG	4 cut(s)	100, 385, 532, 787
BstH2I	RGCGCY	1 cut(s)	906
BstHHI	GCGC	1 cut(s)	905
BstKTI	GATC	6 cut(s)	355, 427, 604, 677, 757, 874
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	6 cut(s)	352, 424, 601, 674, 754, 871
BstMWI	GCNNNNNNNGC	5 cut(s)	342, 458, 511, 731, 858
BstNI	CCWGG	1 cut(s)	730
BstSCI	CCNGG	1 cut(s)	728
BstV1I	GCAGC	1 cut(s)	704
BstV2I	GAAGAC	1 cut(s)	648
BsuI	GTATCC	1 cut(s)	645
BsuRI	GGCC	2 cut(s)	7, 514
BtsCI	GGATG	4 cut(s)	100, 385, 532, 787
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	4 cut(s)	114, 187, 298, 751
Cac8I	GCNNGC	1 cut(s)	863
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	1 cut(s)	905
Cfr13I	GGNCC	2 cut(s)	470, 512
Csp6I	GTAC	2 cut(s)	116, 838
CviAII	CATG	7 cut(s)	146, 173, 419, 488, 647, 654, 758
CviQI	GTAC	2 cut(s)	116, 838
DdeI	CTNAG	2 cut(s)	378, 590
DpnI	GATC	6 cut(s)	354, 426, 603, 676, 756, 873
DpnII	GATC	6 cut(s)	352, 424, 601, 674, 754, 871
DraIII	CACNNNGTG	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	473, 482
Eco47I	GGWCC	1 cut(s)	470
Eco57I	CTGAAG	2 cut(s)	90, 738
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	728
EcoT14I	CCWWGG	2 cut(s)	473, 482
EcoT22I	ATGCAT	1 cut(s)	787
ErhI	CCWWGG	2 cut(s)	473, 482
FaeI	CATG	7 cut(s)	149, 176, 422, 491, 650, 657, 761
FalI	AAGNNNNNCTT	4 cut(s)	466, 498, 564, 596
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	7 cut(s)	145, 172, 418, 487, 646, 653, 757
FbaI	TGATCA	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	346, 693
FokI	GGATG	4 cut(s)	107, 372, 539, 794
Fsp4HI	GCNGC	2 cut(s)	346, 693
FspBI	CTAG	2 cut(s)	506, 740
GlaI	GCGC	1 cut(s)	904
GluI	GCNGC	2 cut(s)	346, 693
HaeII	RGCGCY	1 cut(s)	906
HaeIII	GGCC	2 cut(s)	7, 514
HapII	CCGG	1 cut(s)	626
HhaI	GCGC	1 cut(s)	905
Hin1II	CATG	7 cut(s)	149, 176, 422, 491, 650, 657, 761
Hin6I	GCGC	1 cut(s)	903
HinP1I	GCGC	1 cut(s)	903
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	626
Hpy166II	GTNNAC	5 cut(s)	19, 187, 261, 289, 470
Hpy188I	TCNGA	5 cut(s)	593, 606, 674, 701, 871
Hpy188III	TCNNGA	6 cut(s)	146, 236, 397, 638, 716, 779
Hpy8I	GTNNAC	5 cut(s)	19, 187, 261, 289, 470
Hpy99I	CGWCG	1 cut(s)	807
HpyAV	CCTTC	4 cut(s)	59, 67, 106, 503
HpyCH4III	ACNGT	2 cut(s)	293, 930
HpyCH4V	TGCA	3 cut(s)	785, 797, 910
HpyF10VI	GCNNNNNNNGC	5 cut(s)	342, 458, 511, 731, 858
HpyF3I	CTNAG	2 cut(s)	378, 590
Hsp92II	CATG	7 cut(s)	149, 176, 422, 491, 650, 657, 761
HspAI	GCGC	1 cut(s)	903
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	6 cut(s)	352, 424, 601, 674, 754, 871
LmnI	GCTCC	3 cut(s)	308, 478, 689
Lsp1109I	GCAGC	1 cut(s)	704
LweI	GCATC	3 cut(s)	712, 772, 919
MaeI	CTAG	2 cut(s)	506, 740
MaeIII	GTNAC	2 cut(s)	164, 930
MalI	GATC	6 cut(s)	354, 426, 603, 676, 756, 873
MboI	GATC	6 cut(s)	352, 424, 601, 674, 754, 871
MboII	GAAGA	5 cut(s)	64, 164, 378, 653, 731
MluCI	AATT	3 cut(s)	296, 439, 798
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	9 cut(s)	238, 315, 318, 463, 543, 680, 886, 889, 893
Mph1103I	ATGCAT	1 cut(s)	787
MseI	TTAA	3 cut(s)	48, 80, 444
MslI	CAYNNNNRTG	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	180
MspCI	CTTAAG	1 cut(s)	47
MspI	CCGG	1 cut(s)	626
MspR9I	CCNGG	1 cut(s)	730
Mva1269I	GAATGC	2 cut(s)	695, 774
MvaI	CCWGG	1 cut(s)	730
MwoI	GCNNNNNNNGC	5 cut(s)	342, 458, 511, 731, 858
NdeII	GATC	6 cut(s)	352, 424, 601, 674, 754, 871
NlaIII	CATG	7 cut(s)	149, 176, 422, 491, 650, 657, 761
NlaIV	GGNNCC	2 cut(s)	451, 480
NmuCI	GTSAC	1 cut(s)	930
NsiI	ATGCAT	1 cut(s)	787
PagI	TCATGA	1 cut(s)	145
PctI	GAATGC	2 cut(s)	695, 774
PkrI	GCNGC	2 cut(s)	347, 694
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	728
PspN4I	GGNNCC	2 cut(s)	451, 480
PspPI	GGNCC	2 cut(s)	470, 512
RsaI	GTAC	2 cut(s)	117, 839
RsaNI	GTAC	2 cut(s)	116, 838
RseI	CAYNNNNRTG	1 cut(s)	420
SaqAI	TTAA	3 cut(s)	48, 80, 444
SatI	GCNGC	2 cut(s)	346, 693
Sau3AI	GATC	6 cut(s)	352, 424, 601, 674, 754, 871
Sau96I	GGNCC	2 cut(s)	470, 512
ScaI	AGTACT	1 cut(s)	839
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	730
SfaNI	GCATC	3 cut(s)	712, 772, 919
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	3 cut(s)	296, 439, 798
SsiI	CCGC	2 cut(s)	180, 345
SspMI	CTAG	2 cut(s)	506, 740
StyD4I	CCNGG	1 cut(s)	728
StyI	CCWWGG	2 cut(s)	473, 482
TaaI	ACNGT	2 cut(s)	293, 930
TaqI	TCGA	2 cut(s)	805, 828
TasI	AATT	3 cut(s)	296, 439, 798
TatI	WGTACW	1 cut(s)	837
TauI	GCSGC	1 cut(s)	348
Tru1I	TTAA	3 cut(s)	48, 80, 444
Tru9I	TTAA	3 cut(s)	48, 80, 444
TscAI	CASTG	4 cut(s)	114, 194, 298, 751
TseFI	GTSAC	1 cut(s)	930
TseI	GCWGC	1 cut(s)	692
Tsp45I	GTSAC	1 cut(s)	930
TspDTI	ATGAA	3 cut(s)	165, 328, 374
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	4 cut(s)	114, 194, 298, 751
Vha464I	CTTAAG	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	480
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	2 cut(s)	506, 740
ZrmI	AGTACT	1 cut(s)	839
Zsp2I	ATGCAT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.