pycom15g16630

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010803
Physical Location & Seq
Reverse (-)
11658703 .. 11661449
2747 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1272 bp
ATGGCAACTAAACCTACAGCAAAGCGCATATGGGTTCCGGGGCCCATCATCGTCGGAGCTGGTCCTTCCGGCTTAGCAGTTGCTGCTTGTCTTAAAGAAAAAGGTATTCCAAGCTTGATCCTTGAAAGGGCTAACTGCATAGCTTCGTTATGGCAGCTCAAGACCTATGACCGTCTCCGGCTTCATCTACCCAAGAAATTCTGTGAGCTCATACTGATGCCATTCCCTTCAGATTTTCCCACTTACCCAACAAAGCAGCAGTTTGTGGGTTACCTAAATGCTTACGCTGAAAATTTTGATTTGAAGCCTGCTTTCAACAGGACAGTGGTGAGTGCAAGGTATGATAGTAGATGTGAGCATTGGTTTGTTAATACTTTGGGATTGAAAAATGAGGAGACTGAGTATGTTTGTCAATGGCTAATTGTTGCCACTGGTGAAAATGCTGAGGAAGTTGTACCACAATTTGAAGGGGTGAGTGAGTTTGGTGGGCCTATCGTCCACACTAGCTCTTACAAGAGTGGTGAGTTGTTTAGGGGAAAGAAGGTTTTGGTGGTTGGATCTGGTAATTCAGGCATGGAGGTTAGTTTGGATCTATGCAACTACAATGCACGCCCTTCCCTAGTTGTAAAAGATTCGGTGCACATCTTGCCGCAAGAGATACTGGGAATATCAACTTTTGGATTGTCCATGTGGTTGCTCAAGTGGCTCCCCATGCCCTTTGTGGATCATCTTTTGCTTCTTGTTGCACGCTTCATGCTCGGAGACACTGCTCGGTTTGGAATCTACCGCCCTGAGCGTGGCCCTCTTGAGCTCAAGAGCATGACTGGCAAGACACCTGTTTTGGACATTGGCGCCCTTGCTAAAAAGGTTGTGAGATCGATCAAAACTGGCCACATCAAGGTTTGCAAGGCAGTAAAGCAACTAAAGCATCAAGCTGTGGAGTTTATAGATGGAAGAGTAGAGAATTTCGATGCCATCATTTATGCAACGGGCTACAGAAGTAATGTACTGTCTTGGTTAAGGGAAACGAGCATGTTTTCTGAAAAAGATGGGTTGCCTCGGAAGCCATTCCCGAACGGATGGAAGGGGGAATGTGGGTTGTACTCAGTGGGGTTTACACAACGTGGTCTGCTGGGTGCATCTCTTGATGCAAGGAGAATTGCAGAGGATATTGAGCATAGCTGGAAAGCTGAGGCCACGCATTTCATAGCTTTCACTACTTGTGCACTGCCACCACCACCACCACCACAACCTGCTGTTTCAATTAATTAA

Protein Analysis

424

Amino Acids

47.01

Weight (kDa)

8.99

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_3 PF13738 16 - 212 1.3e-22 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2 PF07992 16 - 209 5.3e-10 Pyridine nucleotide-disulphide oxidoreductase
FMO-like PF00743 17 - 334 2.5e-26 Flavin-binding monooxygenase-like
Lys_Orn_oxgnase PF13434 81 - 203 6.1e-12 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010803)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13260 AT4G13260 AT4G13260
fragaria_vesca FvH4_1g04800
malus_domestica MD01G1067600.v1.1 MD02G1046700.v1.1 MD15G1184800.v1.1
prunus_persica Prupe.7G231200_v2.0.a1
pyrus_communis pycom02g03910 pycom15g16630
rosa_chinensis RchiOBHm_Chr2g0090431
rosa_laevigata RLG00000016108
rosa_multiflora Rmu_sc0004514.1_g000016
rosa_roxburghii Rroxscaffold_2G00151160
rosa_rugosa Rorug02G0008000
rosa_samantha Rh2AG053400 Rh2BG052700 Rh2CG054800 Rh2DG053600
rosa_wichuraiana Rw2G004360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1261
AccB1I GGYRCC 1 cut(s) 851
AciI CCGC 2 cut(s) 650, 787
AclWI GGATC 4 cut(s) 112, 565, 597, 732
AcoI YGGCCR 1 cut(s) 889
AcsI RAATTY 3 cut(s) 197, 292, 964
AcuI CTGAAG 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 852
AdeI CACNNNGTG 1 cut(s) 1124
AfaI GTAC 3 cut(s) 456, 1008, 1103
AfiI CCNNNNNNNGG 3 cut(s) 127, 797, 898
AgsI TTSAA 6 cut(s) 125, 304, 316, 385, 467, 1263
Alw21I GWGCWC 4 cut(s) 210, 642, 813, 1228
Alw26I GTCTC 3 cut(s) 179, 389, 756
Alw44I GTGCAC 2 cut(s) 638, 1224
AlwI GGATC 4 cut(s) 112, 565, 597, 732
AlwNI CAGNNNCTG 1 cut(s) 83
AoxI GGCC 5 cut(s) 41, 488, 799, 889, 1194
ApaI GGGCCC 1 cut(s) 45
ApaLI GTGCAC 2 cut(s) 638, 1224
ApeKI GCWGC 3 cut(s) 83, 154, 256
ApoI RAATTY 3 cut(s) 197, 292, 964
ArsI GACNNNNNNTTYG 2 cut(s) 823, 855
AseI ATTAAT 1 cut(s) 1266
Asp700I GAANNNNTTC 1 cut(s) 1067
AspLEI GCGC 2 cut(s) 27, 854
AspS9I GGNCC 5 cut(s) 41, 42, 62, 488, 800
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 4 cut(s) 340, 446, 484, 533
AvaII GGWCC 1 cut(s) 62
BaeGI GKGCMC 3 cut(s) 45, 642, 1228
BalI TGGCCA 1 cut(s) 891
BanI GGYRCC 1 cut(s) 851
BanII GRGCYC 3 cut(s) 45, 210, 813
Bbv12I GWGCWC 4 cut(s) 210, 642, 813, 1228
BbvCI CCTCAGC 2 cut(s) 444, 1191
BbvI GCAGC 3 cut(s) 70, 166, 268
BccI CCATC 5 cut(s) 53, 944, 983, 1043, 1074
BcnI CCSGG 1 cut(s) 39
BcoDI GTCTC 3 cut(s) 179, 389, 756
BfaI CTAG 2 cut(s) 504, 620
BfmI CTRYAG 2 cut(s) 15, 994
BfoI RGCGCY 1 cut(s) 855
BfuAI ACCTGC 1 cut(s) 1261
BisI GCNGC 4 cut(s) 84, 155, 257, 650
BlpI GCTNAGC 1 cut(s) 73
BlsI GCNGC 4 cut(s) 85, 156, 258, 651
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 5 cut(s) 41, 42, 62, 488, 800
BmiI GGNNCC 5 cut(s) 36, 42, 43, 707, 853
BmrFI CCNGG 1 cut(s) 39
BmrI ACTGGG 1 cut(s) 671
BmsI GCATC 5 cut(s) 207, 937, 961, 1138, 1148
BmuI ACTGGG 1 cut(s) 671
Bpu10I CCTNAGC 3 cut(s) 444, 792, 1191
Bpu1102I GCTNAGC 1 cut(s) 73
BpuEI CTTGAG 4 cut(s) 143, 683, 797, 827
BpuMI CCSGG 1 cut(s) 39
Bsa29I ATCGAT 1 cut(s) 878
BsaHI GRCGYC 1 cut(s) 852
BsaJI CCNNGG 2 cut(s) 38, 1058
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 797, 898
Bse1I ACTGG 4 cut(s) 436, 666, 829, 892
BseCI ATCGAT 1 cut(s) 878
BseDI CCNNGG 2 cut(s) 38, 1058
BseGI GGATG 1 cut(s) 1085
BseLI CCNNNNNNNGG 3 cut(s) 127, 797, 898
BseMII CTCAG 5 cut(s) 390, 435, 783, 1119, 1182
BseNI ACTGG 4 cut(s) 436, 666, 829, 892
BseRI GAGGAG 1 cut(s) 407
BseSI GKGCMC 3 cut(s) 45, 642, 1228
BseXI GCAGC 3 cut(s) 70, 166, 268
BseYI CCCAGC 1 cut(s) 1132
BshFI GGCC 5 cut(s) 43, 490, 801, 891, 1196
BshNI GGYRCC 1 cut(s) 851
BshVI ATCGAT 1 cut(s) 878
BsiHKAI GWGCWC 4 cut(s) 210, 642, 813, 1228
BsiSI CCGG 3 cut(s) 38, 69, 178
BslI CCNNNNNNNGG 3 cut(s) 127, 797, 898
BsmAI GTCTC 3 cut(s) 179, 389, 756
BsmBI CGTCTC 1 cut(s) 179
BsnI GGCC 5 cut(s) 43, 490, 801, 891, 1196
Bsp120I GGGCCC 1 cut(s) 41
Bsp1286I GDGCHC 5 cut(s) 45, 210, 642, 813, 1228
Bsp143I GATC 6 cut(s) 117, 557, 589, 724, 875, 879
Bsp1720I GCTNAGC 1 cut(s) 73
BspACI CCGC 2 cut(s) 650, 787
BspANI GGCC 5 cut(s) 43, 490, 801, 891, 1196
BspCNI CTCAG 5 cut(s) 391, 436, 784, 1118, 1183
BspDI ATCGAT 1 cut(s) 878
BspLI GGNNCC 5 cut(s) 36, 42, 43, 707, 853
BspMI ACCTGC 1 cut(s) 1261
BspPI GGATC 4 cut(s) 112, 565, 597, 732
BspT107I GGYRCC 1 cut(s) 851
BsrI ACTGG 4 cut(s) 436, 666, 829, 892
BssECI CCNNGG 2 cut(s) 38, 1058
BssMI GATC 6 cut(s) 117, 557, 589, 724, 875, 879
BssNI GRCGYC 1 cut(s) 852
Bst4CI ACNGT 3 cut(s) 173, 325, 1011
Bst6I CTCTTC 1 cut(s) 949
BstACI GRCGYC 1 cut(s) 852
BstAPI GCANNNNNTGC 2 cut(s) 83, 646
BstC8I GCNNGC 3 cut(s) 309, 610, 748
BstDEI CTNAG 6 cut(s) 73, 399, 444, 792, 1105, 1191
BstEII GGTNACC 1 cut(s) 269
BstF5I GGATG 1 cut(s) 1085
BstH2I RGCGCY 1 cut(s) 855
BstHHI GCGC 2 cut(s) 27, 854
BstKTI GATC 6 cut(s) 120, 560, 592, 727, 878, 882
BstMAI GTCTC 3 cut(s) 179, 389, 756
BstMBI GATC 6 cut(s) 117, 557, 589, 724, 875, 879
BstMWI GCNNNNNNNGC 7 cut(s) 83, 646, 703, 712, 825, 925, 1063
BstNSI RCATGY 1 cut(s) 1036
BstPI GGTNACC 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 37
BstSFI CTRYAG 2 cut(s) 15, 994
BstSLI GKGCMC 3 cut(s) 45, 642, 1228
BstV1I GCAGC 3 cut(s) 70, 166, 268
BstX2I RGATCY 2 cut(s) 557, 589
BstYI RGATCY 2 cut(s) 557, 589
Bsu15I ATCGAT 1 cut(s) 878
BsuRI GGCC 5 cut(s) 43, 490, 801, 891, 1196
BsuTUI ATCGAT 1 cut(s) 878
BtsCI GGATG 1 cut(s) 1085
BtsI GCAGTG 2 cut(s) 765, 1226
BtsIMutI CAGTG 5 cut(s) 330, 429, 765, 1113, 1226
BveI ACCTGC 1 cut(s) 1261
Cac8I GCNNGC 3 cut(s) 309, 610, 748
CaiI CAGNNNCTG 1 cut(s) 83
CfoI GCGC 2 cut(s) 27, 854
Cfr13I GGNCC 5 cut(s) 41, 42, 62, 488, 800
ClaI ATCGAT 1 cut(s) 878
Csp6I GTAC 3 cut(s) 455, 1007, 1102
CviAII CATG 6 cut(s) 574, 688, 712, 754, 820, 1033
CviQI GTAC 3 cut(s) 455, 1007, 1102
DdeI CTNAG 6 cut(s) 73, 399, 444, 792, 1105, 1191
DinI GGCGCC 1 cut(s) 853
DpnI GATC 6 cut(s) 119, 559, 591, 726, 877, 881
DpnII GATC 6 cut(s) 117, 557, 589, 724, 875, 879
DraIII CACNNNGTG 1 cut(s) 1124
EaeI YGGCCR 1 cut(s) 889
Eam1104I CTCTTC 1 cut(s) 949
EarI CTCTTC 1 cut(s) 949
Ecl136II GAGCTC 2 cut(s) 208, 811
Eco24I GRGCYC 3 cut(s) 45, 210, 813
Eco47I GGWCC 1 cut(s) 62
Eco53kI GAGCTC 2 cut(s) 208, 811
Eco57I CTGAAG 1 cut(s) 213
Eco91I GGTNACC 1 cut(s) 269
EcoICRI GAGCTC 2 cut(s) 208, 811
EcoO109I RGGNCCY 1 cut(s) 41
EcoO65I GGTNACC 1 cut(s) 269
EcoT38I GRGCYC 3 cut(s) 45, 210, 813
EgeI GGCGCC 1 cut(s) 853
EheI GGCGCC 1 cut(s) 853
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 6 cut(s) 577, 691, 715, 757, 823, 1036
FatI CATG 6 cut(s) 573, 687, 711, 753, 819, 1032
FauNDI CATATG 1 cut(s) 29
Fnu4HI GCNGC 4 cut(s) 84, 155, 257, 650
FokI GGATG 1 cut(s) 1092
FriOI GRGCYC 3 cut(s) 45, 210, 813
Fsp4HI GCNGC 4 cut(s) 84, 155, 257, 650
FspBI CTAG 2 cut(s) 504, 620
GlaI GCGC 2 cut(s) 26, 853
GluI GCNGC 4 cut(s) 84, 155, 257, 650
GsaI CCCAGC 1 cut(s) 1136
HaeII RGCGCY 1 cut(s) 855
HaeIII GGCC 5 cut(s) 43, 490, 801, 891, 1196
HapII CCGG 3 cut(s) 38, 69, 178
HhaI GCGC 2 cut(s) 27, 854
Hin1I GRCGYC 1 cut(s) 852
Hin1II CATG 6 cut(s) 577, 691, 715, 757, 823, 1036
Hin6I GCGC 2 cut(s) 25, 852
HinP1I GCGC 2 cut(s) 25, 852
HindIII AAGCTT 1 cut(s) 112
HinfI GANTC 2 cut(s) 632, 780
HpaII CCGG 3 cut(s) 38, 69, 178
HphI GGTGA 4 cut(s) 340, 446, 484, 533
Hpy166II GTNNAC 4 cut(s) 499, 640, 1116, 1226
Hpy188I TCNGA 5 cut(s) 56, 232, 761, 1042, 1062
Hpy188III TCNNGA 5 cut(s) 160, 806, 814, 1072, 1145
Hpy8I GTNNAC 4 cut(s) 499, 640, 1116, 1226
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 6 cut(s) 75, 237, 461, 535, 624, 1078
HpyCH4III ACNGT 3 cut(s) 173, 325, 1011
HpyCH4IV ACGT 1 cut(s) 1123
HpyF10VI GCNNNNNNNGC 7 cut(s) 83, 646, 703, 712, 825, 925, 1063
HpyF3I CTNAG 6 cut(s) 73, 399, 444, 792, 1105, 1191
HpySE526I ACGT 1 cut(s) 1123
Hsp92I GRCGYC 1 cut(s) 852
Hsp92II CATG 6 cut(s) 577, 691, 715, 757, 823, 1036
HspAI GCGC 2 cut(s) 25, 852
KasI GGCGCC 1 cut(s) 851
Kzo9I GATC 6 cut(s) 117, 557, 589, 724, 875, 879
LmnI GCTCC 2 cut(s) 56, 711
Lsp1109I GCAGC 3 cut(s) 70, 166, 268
LweI GCATC 5 cut(s) 207, 937, 961, 1138, 1148
MaeI CTAG 2 cut(s) 504, 620
MaeII ACGT 1 cut(s) 1123
MaeIII GTNAC 1 cut(s) 269
MalI GATC 6 cut(s) 119, 559, 591, 726, 877, 881
MboI GATC 6 cut(s) 117, 557, 589, 724, 875, 879
MboII GAAGA 1 cut(s) 966
MflI RGATCY 2 cut(s) 557, 589
MhlI GDGCHC 5 cut(s) 45, 210, 642, 813, 1228
MlsI TGGCCA 1 cut(s) 891
MluCI AATT 9 cut(s) 197, 292, 420, 461, 565, 964, 1158, 1263, 1267
MluNI TGGCCA 1 cut(s) 891
Mly113I GGCGCC 1 cut(s) 852
MmeI TCCRAC 2 cut(s) 34, 535
MnlI CCTC 7 cut(s) 385, 439, 571, 813, 1068, 1159, 1186
Mox20I TGGCCA 1 cut(s) 891
MroXI GAANNNNTTC 1 cut(s) 1067
MscI TGGCCA 1 cut(s) 891
MseI TTAA 5 cut(s) 93, 369, 1019, 1266, 1270
MslI CAYNNNNRTG 1 cut(s) 215
Msp20I TGGCCA 1 cut(s) 891
MspI CCGG 3 cut(s) 38, 69, 178
MspR9I CCNGG 1 cut(s) 39
MwoI GCNNNNNNNGC 7 cut(s) 83, 646, 703, 712, 825, 925, 1063
NarI GGCGCC 1 cut(s) 852
NciI CCSGG 1 cut(s) 39
NdeI CATATG 1 cut(s) 29
NdeII GATC 6 cut(s) 117, 557, 589, 724, 875, 879
NlaIII CATG 6 cut(s) 577, 691, 715, 757, 823, 1036
NlaIV GGNNCC 5 cut(s) 36, 42, 43, 707, 853
NspI RCATGY 1 cut(s) 1036
PacI TTAATTAA 1 cut(s) 1270
PdmI GAANNNNTTC 1 cut(s) 1067
PfeI GAWTC 2 cut(s) 632, 780
PkrI GCNGC 4 cut(s) 85, 156, 258, 651
PluTI GGCGCC 1 cut(s) 855
PshBI ATTAAT 1 cut(s) 1266
Psp124BI GAGCTC 2 cut(s) 210, 813
PspEI GGTNACC 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 1132
PspN4I GGNNCC 5 cut(s) 36, 42, 43, 707, 853
PspOMI GGGCCC 1 cut(s) 41
PspPI GGNCC 5 cut(s) 41, 42, 62, 488, 800
PstNI CAGNNNCTG 1 cut(s) 83
PsuI RGATCY 2 cut(s) 557, 589
RsaI GTAC 3 cut(s) 456, 1008, 1103
RsaNI GTAC 3 cut(s) 455, 1007, 1102
RseI CAYNNNNRTG 1 cut(s) 215
SacI GAGCTC 2 cut(s) 210, 813
SaqAI TTAA 5 cut(s) 93, 369, 1019, 1266, 1270
SatI GCNGC 4 cut(s) 84, 155, 257, 650
Sau3AI GATC 6 cut(s) 117, 557, 589, 724, 875, 879
Sau96I GGNCC 5 cut(s) 41, 42, 62, 488, 800
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 5 cut(s) 45, 210, 642, 813, 1228
SfaNI GCATC 5 cut(s) 207, 937, 961, 1138, 1148
SfcI CTRYAG 2 cut(s) 15, 994
SfoI GGCGCC 1 cut(s) 853
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 4 cut(s) 158, 698, 806, 812
SmoI CTYRAG 4 cut(s) 158, 698, 806, 812
Sse9I AATT 9 cut(s) 197, 292, 420, 461, 565, 964, 1158, 1263, 1267
SsiI CCGC 2 cut(s) 650, 787
SspDI GGCGCC 1 cut(s) 851
SspMI CTAG 2 cut(s) 504, 620
SstI GAGCTC 2 cut(s) 210, 813
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 3 cut(s) 173, 325, 1011
TaiI ACGT 1 cut(s) 1126
TaqI TCGA 2 cut(s) 878, 969
TasI AATT 9 cut(s) 197, 292, 420, 461, 565, 964, 1158, 1263, 1267
TatI WGTACW 2 cut(s) 1006, 1101
TauI GCSGC 1 cut(s) 652
TfiI GAWTC 2 cut(s) 632, 780
Tru1I TTAA 5 cut(s) 93, 369, 1019, 1266, 1270
Tru9I TTAA 5 cut(s) 93, 369, 1019, 1266, 1270
TscAI CASTG 5 cut(s) 330, 436, 772, 1113, 1233
TseI GCWGC 3 cut(s) 83, 154, 256
TspDTI ATGAA 3 cut(s) 173, 742, 1195
TspGWI ACGGA 1 cut(s) 1092
TspRI CASTG 5 cut(s) 330, 436, 772, 1113, 1233
VneI GTGCAC 2 cut(s) 638, 1224
VpaK11BI GGWCC 1 cut(s) 62
VspI ATTAAT 1 cut(s) 1266
XapI RAATTY 3 cut(s) 197, 292, 964
XceI RCATGY 1 cut(s) 1036
XcmI CCANNNNNNNNNTGG 1 cut(s) 718
XmnI GAANNNNTTC 1 cut(s) 1067
XspI CTAG 2 cut(s) 504, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.