pycom15g16730

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013103
Physical Location & Seq
Forward (+)
11741133 .. 11742732
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 681 bp
ATGGCCTCCTCCAAGAGCGAGTACGTCTTCTACGCGCCGATCCCGTCAGGCCCCTACAACCCCCAACCTCAGCAAAACGTCGTCGTTCTAACTCATTACCGCCCCGCTCCCGACTACTGCTGCCGACGCTCTCTCCGCCTCTACATCTCAATCACCACCTCCCTCCTCCTCCTCTCCGCCGCCGTCTTCTTCCTCTACCCCTCCGACCCCACCCTCCAAATCGCCCGAATTAACCTCAACCACGTCCGAATCAACGCGGCCCCCAAGCCCACTCTCGACCTCTCCTTCTCTCTCACCATCAGAGTTCGAAATCGTGACTTCTTCTCTCTGAATTACGACTCGCTCAAAGTTACGGTGGGGTACCGCGCGAGGGAGCTAGGGGTTGTGAGCTCCGACGGAGGGCGAGTGAGGGCCAGAGCATCGTCGTACGTGAACGCCACGCTCGTGATCGACGGGCTCCAGGTCCTCCACGACGTGTTCTACTTGCTTGAAGATTTGGCCAAGGGGGTAATTCCCTTTGATACTGATACGGAGGTGGATGGAAGTTTGGGGCTTTTGTTCTTCAAGATTCCGATCAAGGCGAGAGCGTCATGTGAAGTATATGTTGGTACAAACAATCAAACAGTTGTTCGTGAAGACTGCTACTCTAAGGTTAGGATTTTCTTTGCTTTCTTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

227

Amino Acids

25.39

Weight (kDa)

9.03

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 99 - 193 3.2e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13270
fragaria_vesca FvH4_1g04970
malus_domestica MD02G1048400.v1.1 MD15G1186800.v1.1
prunus_persica Prupe.7G229800_v2.0.a1
pyrus_communis pycom02g04060 pycom15g16730
rosa_chinensis RchiOBHm_Chr2g0090601
rosa_laevigata RLG00000016123
rosa_multiflora Rmu_sc0020367.1_g000001 Rmu_sc0040185.1_g000001
rosa_roxburghii Rroxscaffold_2G00151000
rosa_rugosa Rorug02G0009300
rosa_samantha Rh2AG054600 Rh2BG053800 Rh2CG056000 Rh2DG054900
rosa_wichuraiana Rw2G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 360
AccB1I GGYRCC 1 cut(s) 360
AccBSI CCGCTC 1 cut(s) 107
AccII CGCG 4 cut(s) 35, 257, 366, 368
AciI CCGC 7 cut(s) 100, 105, 136, 177, 180, 257, 364
AclWI GGATC 1 cut(s) 34
AcoI YGGCCR 1 cut(s) 498
AdeI CACNNNGTG 1 cut(s) 475
AfaI GTAC 4 cut(s) 23, 362, 428, 610
AfiI CCNNNNNNNGG 2 cut(s) 370, 399
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 2 cut(s) 491, 565
AjiI CACGTC 2 cut(s) 244, 475
AjnI CCWGG 1 cut(s) 459
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AleI CACNNNNGTG 1 cut(s) 443
AluBI AGCT 2 cut(s) 376, 390
AluI AGCT 2 cut(s) 376, 390
Alw21I GWGCWC 1 cut(s) 392
AlwI GGATC 1 cut(s) 34
AoxI GGCC 5 cut(s) 3, 49, 258, 411, 498
ApeKI GCWGC 1 cut(s) 120
Asp718I GGTACC 1 cut(s) 360
AspLEI GCGC 2 cut(s) 37, 368
AspS9I GGNCC 4 cut(s) 50, 259, 411, 463
AsuHPI GGTGA 2 cut(s) 145, 286
AsuII TTCGAA 1 cut(s) 307
AvaII GGWCC 1 cut(s) 463
BaeI ACNNNNGTAYC 2 cut(s) 519, 552
BalI TGGCCA 1 cut(s) 500
BanI GGYRCC 1 cut(s) 360
BanII GRGCYC 2 cut(s) 392, 459
BauI CACGAG 1 cut(s) 443
BbsI GAAGAC 3 cut(s) 19, 178, 642
Bbv12I GWGCWC 1 cut(s) 392
BbvCI CCTCAGC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 107
BccI CCATC 2 cut(s) 305, 533
BceAI ACGGC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 461
BfaI CTAG 1 cut(s) 377
BisI GCNGC 3 cut(s) 121, 180, 258
BlsI GCNGC 3 cut(s) 122, 181, 259
Bme1390I CCNGG 1 cut(s) 461
Bme18I GGWCC 1 cut(s) 463
BmgBI CACGTC 2 cut(s) 244, 475
BmgT120I GGNCC 4 cut(s) 50, 259, 411, 463
BmiI GGNNCC 4 cut(s) 52, 261, 362, 458
BmrFI CCNGG 1 cut(s) 461
BmsI GCATC 1 cut(s) 428
BpiI GAAGAC 3 cut(s) 19, 178, 642
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 307
BsaAI YACGTR 1 cut(s) 430
BsaBI GATNNNNATC 1 cut(s) 572
BsaJI CCNNGG 1 cut(s) 501
BsaXI ACNNNNNCTCC 4 cut(s) 117, 147, 390, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 399
Bse8I GATNNNNATC 1 cut(s) 572
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 1 cut(s) 501
BseGI GGATG 1 cut(s) 544
BseJI GATNNNNATC 1 cut(s) 572
BseLI CCNNNNNNNGG 2 cut(s) 370, 399
BseMII CTCAG 1 cut(s) 83
BseRI GAGGAG 3 cut(s) 155, 158, 161
BseXI GCAGC 1 cut(s) 107
Bsh1236I CGCG 4 cut(s) 35, 257, 366, 368
BshFI GGCC 5 cut(s) 5, 51, 260, 413, 500
BshNI GGYRCC 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 392
BsiWI CGTACG 1 cut(s) 426
BslI CCNNNNNNNGG 2 cut(s) 370, 399
BsnI GGCC 5 cut(s) 5, 51, 260, 413, 500
Bsp119I TTCGAA 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 392, 459
Bsp143I GATC 3 cut(s) 39, 447, 573
BspACI CCGC 7 cut(s) 100, 105, 136, 177, 180, 257, 364
BspANI GGCC 5 cut(s) 5, 51, 260, 413, 500
BspCNI CTCAG 1 cut(s) 82
BspFNI CGCG 4 cut(s) 35, 257, 366, 368
BspLI GGNNCC 4 cut(s) 52, 261, 362, 458
BspPI GGATC 1 cut(s) 34
BspT104I TTCGAA 1 cut(s) 307
BspT107I GGYRCC 1 cut(s) 360
BsrBI CCGCTC 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 501
BssMI GATC 3 cut(s) 39, 447, 573
BssSI CACGAG 1 cut(s) 443
BssT1I CCWWGG 1 cut(s) 501
Bst2BI CACGAG 1 cut(s) 443
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 2 cut(s) 355, 625
BstBAI YACGTR 1 cut(s) 430
BstBI TTCGAA 1 cut(s) 307
BstDEI CTNAG 2 cut(s) 69, 648
BstF5I GGATG 1 cut(s) 544
BstFNI CGCG 4 cut(s) 35, 257, 366, 368
BstHHI GCGC 2 cut(s) 37, 368
BstKTI GATC 3 cut(s) 42, 450, 576
BstMBI GATC 3 cut(s) 39, 447, 573
BstMWI GCNNNNNNNGC 2 cut(s) 126, 135
BstNI CCWGG 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 459
BstUI CGCG 4 cut(s) 35, 257, 366, 368
BstV1I GCAGC 1 cut(s) 107
BstV2I GAAGAC 3 cut(s) 19, 178, 642
BsuRI GGCC 5 cut(s) 5, 51, 260, 413, 500
BtrI CACGTC 2 cut(s) 244, 475
BtsCI GGATG 1 cut(s) 544
CfoI GCGC 2 cut(s) 37, 368
Cfr13I GGNCC 4 cut(s) 50, 259, 411, 463
CseI GACGC 2 cut(s) 135, 576
Csp6I GTAC 4 cut(s) 22, 361, 427, 609
CviAII CATG 1 cut(s) 591
CviQI GTAC 4 cut(s) 22, 361, 427, 609
DdeI CTNAG 2 cut(s) 69, 648
DpnI GATC 3 cut(s) 41, 449, 575
DpnII GATC 3 cut(s) 39, 447, 573
DraIII CACNNNGTG 1 cut(s) 475
EaeI YGGCCR 1 cut(s) 498
EciI GGCGGA 2 cut(s) 125, 166
Ecl136II GAGCTC 1 cut(s) 390
Eco130I CCWWGG 1 cut(s) 501
Eco24I GRGCYC 2 cut(s) 392, 459
Eco47I GGWCC 1 cut(s) 463
Eco53kI GAGCTC 1 cut(s) 390
EcoICRI GAGCTC 1 cut(s) 390
EcoO109I RGGNCCY 2 cut(s) 50, 463
EcoRII CCWGG 1 cut(s) 459
EcoT14I CCWWGG 1 cut(s) 501
EcoT38I GRGCYC 2 cut(s) 392, 459
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 1 cut(s) 594
FaiI YATR 3 cut(s) 592, 601, 603
FatI CATG 1 cut(s) 590
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 3 cut(s) 121, 180, 258
FokI GGATG 1 cut(s) 551
FriOI GRGCYC 2 cut(s) 392, 459
Fsp4HI GCNGC 3 cut(s) 121, 180, 258
FspBI CTAG 1 cut(s) 377
GlaI GCGC 2 cut(s) 36, 367
GluI GCNGC 3 cut(s) 121, 180, 258
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 5 cut(s) 5, 51, 260, 413, 500
HgaI GACGC 2 cut(s) 135, 576
HhaI GCGC 2 cut(s) 37, 368
Hin1II CATG 1 cut(s) 594
Hin6I GCGC 2 cut(s) 35, 366
HinP1I GCGC 2 cut(s) 35, 366
HinfI GANTC 3 cut(s) 249, 338, 568
HphI GGTGA 2 cut(s) 145, 286
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 6 cut(s) 205, 248, 302, 330, 394, 573
Hpy188III TCNNGA 6 cut(s) 110, 275, 314, 445, 565, 632
Hpy8I GTNNAC 1 cut(s) 433
Hpy99I CGWCG 7 cut(s) 83, 86, 129, 398, 427, 455, 476
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 2 cut(s) 355, 625
HpyCH4IV ACGT 5 cut(s) 24, 78, 243, 429, 474
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 135
HpyF3I CTNAG 2 cut(s) 69, 648
HpySE526I ACGT 5 cut(s) 24, 78, 243, 429, 474
Hsp92II CATG 1 cut(s) 594
HspAI GCGC 2 cut(s) 35, 366
KpnI GGTACC 1 cut(s) 364
Kzo9I GATC 3 cut(s) 39, 447, 573
LmnI GCTCC 4 cut(s) 112, 373, 395, 462
LpnPI CCDG 4 cut(s) 33, 427, 446, 473
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 1 cut(s) 428
MaeI CTAG 1 cut(s) 377
MaeII ACGT 5 cut(s) 24, 78, 243, 429, 474
MaeIII GTNAC 2 cut(s) 314, 349
MalI GATC 3 cut(s) 41, 449, 575
MbiI CCGCTC 1 cut(s) 107
MboI GATC 3 cut(s) 39, 447, 573
MboII GAAGA 7 cut(s) 19, 178, 181, 313, 503, 553, 647
MhlI GDGCHC 2 cut(s) 392, 459
MlsI TGGCCA 1 cut(s) 500
MluCI AATT 3 cut(s) 228, 331, 510
MluNI TGGCCA 1 cut(s) 500
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 2 cut(s) 228, 417
Mox20I TGGCCA 1 cut(s) 500
MscI TGGCCA 1 cut(s) 500
MseI TTAA 2 cut(s) 231, 675
MslI CAYNNNNRTG 1 cut(s) 443
Msp20I TGGCCA 1 cut(s) 500
MspR9I CCNGG 1 cut(s) 461
MvaI CCWGG 1 cut(s) 461
MvnI CGCG 4 cut(s) 35, 257, 366, 368
MwoI GCNNNNNNNGC 2 cut(s) 126, 135
NdeII GATC 3 cut(s) 39, 447, 573
NlaIII CATG 1 cut(s) 594
NlaIV GGNNCC 4 cut(s) 52, 261, 362, 458
NmuCI GTSAC 1 cut(s) 314
NspV TTCGAA 1 cut(s) 307
OliI CACNNNNGTG 1 cut(s) 443
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PfeI GAWTC 2 cut(s) 249, 568
Pfl23II CGTACG 1 cut(s) 426
PkrI GCNGC 3 cut(s) 122, 181, 259
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Ppu21I YACGTR 1 cut(s) 430
PpuMI RGGWCCY 1 cut(s) 463
Psp124BI GAGCTC 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 463
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PspLI CGTACG 1 cut(s) 426
PspN4I GGNNCC 4 cut(s) 52, 261, 362, 458
PspPI GGNCC 4 cut(s) 50, 259, 411, 463
PspPPI RGGWCCY 1 cut(s) 463
RsaI GTAC 4 cut(s) 23, 362, 428, 610
RsaNI GTAC 4 cut(s) 22, 361, 427, 609
RseI CAYNNNNRTG 1 cut(s) 443
SacI GAGCTC 1 cut(s) 392
SaqAI TTAA 2 cut(s) 231, 675
SatI GCNGC 3 cut(s) 121, 180, 258
Sau3AI GATC 3 cut(s) 39, 447, 573
Sau96I GGNCC 4 cut(s) 50, 259, 411, 463
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 461
SduI GDGCHC 2 cut(s) 392, 459
SfaNI GCATC 1 cut(s) 428
SfuI TTCGAA 1 cut(s) 307
SinI GGWCC 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 443
Sse9I AATT 3 cut(s) 228, 331, 510
SsiI CCGC 7 cut(s) 100, 105, 136, 177, 180, 257, 364
SspMI CTAG 1 cut(s) 377
SstI GAGCTC 1 cut(s) 392
StyD4I CCNGG 1 cut(s) 459
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 2 cut(s) 355, 625
TaiI ACGT 5 cut(s) 27, 81, 246, 432, 477
TaqI TCGA 3 cut(s) 276, 307, 450
TasI AATT 3 cut(s) 228, 331, 510
TauI GCSGC 2 cut(s) 182, 260
TfiI GAWTC 2 cut(s) 249, 568
Tru1I TTAA 2 cut(s) 231, 675
Tru9I TTAA 2 cut(s) 231, 675
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 1 cut(s) 120
Tsp45I GTSAC 1 cut(s) 314
TspGWI ACGGA 2 cut(s) 411, 545
VpaK11BI GGWCC 1 cut(s) 463
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.