Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013107

Physical Location & Seq

Genomic Coordinates Reverse (-)

12782703 .. 12784142

Gene Structure 1440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGTCAATGTCGCGAGACGCCGGCCTCCATCGCACGACACAGTTCTCCGCCGCATTCGCCGTCGCTATCTTCTCCCTCGCCGTCATCGCCCACTGTTCCGACAATAATTCGGAGGTGAATTGCAGCCGAAACTGCGTGGCGGAGAACTGTAATTCGGTTGGGATTCGATACGGGAAGTACTGCGGGGTAGGGTGGACCGGCTGCCCGGGAGAGCAGCCCTGCGATGATCTTGACGCGTGCTGCAAGATTCATGACGATTGTGTTGGCAACAAAGGTATGACCAATATAAAATGCCACGAGAAGTTCAAGCGCTGCATAAAGAAAGTACATAAATCTGGGAAGGTTGGATTTGCTAAGCAGTGTCCTTATGATACCGCTGTGCCTACTATGGTACAGGGTATGGATTTGGCTATCTTACTGAGCCAGTTTGGTAACTCAAAGCTTGAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005802 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0012505 GO:0016043 GO:0016049 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030307 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045927 GO:0048229 GO:0048468 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051704 GO:0052689 GO:0060560 GO:0065007 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04972 ko04975 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04972 map04975

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.33

Weight (kDa)

8.22

Isoelectric Point (pI)

26.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19690 AT2G19690 AT2G19690
fragaria_vesca	FvH4_1g06930
malus_domestica	MD02G1073600.v1.1 MD15G1203100.v1.1
prunus_persica	Prupe.7G214100_v2.0.a1
pyrus_communis	pycom02g05800 pycom15g18030
rosa_chinensis	RchiOBHm_Chr2g0092871
rosa_laevigata	RLG00000016339
rosa_multiflora	Rmu_sc0003262.1_g000020
rosa_roxburghii	Rroxscaffold_2G00148760
rosa_rugosa	Rorug02G0029800
rosa_samantha	Rh2BG076900 Rh2CG079200 Rh2DG074200
rosa_wichuraiana	Rw2G007050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	16, 239
AciI	CCGC	5 cut(s)	51, 54, 143, 186, 378
AcyI	GRCGYC	2 cut(s)	5, 21
AfaI	GTAC	3 cut(s)	182, 330, 396
AfeI	AGCGCT	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	310, 449
AluBI	AGCT	1 cut(s)	445
AluI	AGCT	1 cut(s)	445
Alw26I	GTCTC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	208
Aor51HI	AGCGCT	1 cut(s)	314
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	5 cut(s)	126, 204, 217, 243, 315
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	198
AsuC2I	CCSGG	2 cut(s)	209, 210
AsuHPI	GGTGA	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	198
BaeI	ACNNNNGTAYC	2 cut(s)	366, 399
BauI	CACGAG	1 cut(s)	299
BbvI	GCAGC	5 cut(s)	138, 191, 229, 230, 302
BccI	CCATC	1 cut(s)	39
BceAI	ACGGC	2 cut(s)	47, 68
BcnI	CCSGG	2 cut(s)	209, 210
BcoDI	GTCTC	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	316
BisI	GCNGC	6 cut(s)	54, 127, 205, 218, 244, 316
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	6 cut(s)	55, 128, 206, 219, 245, 317
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	2 cut(s)	209, 210
Bme18I	GGWCC	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	198
BmrFI	CCNGG	2 cut(s)	209, 210
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuMI	CCSGG	2 cut(s)	209, 210
BsaHI	GRCGYC	2 cut(s)	5, 21
BsaJI	CCNNGG	1 cut(s)	208
Bse118I	RCCGGY	2 cut(s)	23, 200
Bse1I	ACTGG	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	427
BseXI	GCAGC	5 cut(s)	138, 191, 229, 230, 302
Bsh1236I	CGCG	2 cut(s)	16, 239
BshFI	GGCC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	3 cut(s)	24, 201, 209
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	229
Bsp1720I	GCTNAGC	1 cut(s)	357
Bsp68I	TCGCGA	1 cut(s)	16
BspACI	CCGC	5 cut(s)	51, 54, 143, 186, 378
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	414
BspFNI	CGCG	2 cut(s)	16, 239
BspHI	TCATGA	1 cut(s)	253
BsrFI	RCCGGY	2 cut(s)	23, 200
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	2 cut(s)	23, 200
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	1 cut(s)	229
BssNI	GRCGYC	2 cut(s)	5, 21
BssSI	CACGAG	1 cut(s)	299
Bst2BI	CACGAG	1 cut(s)	299
Bst4CI	ACNGT	3 cut(s)	45, 98, 152
BstACI	GRCGYC	2 cut(s)	5, 21
BstC8I	GCNNGC	2 cut(s)	25, 241
BstDEI	CTNAG	2 cut(s)	357, 422
BstFNI	CGCG	2 cut(s)	16, 239
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 59, 89, 135
BstSCI	CCNGG	2 cut(s)	207, 208
BstUI	CGCG	2 cut(s)	16, 239
BstV1I	GCAGC	5 cut(s)	138, 191, 229, 230, 302
BsuRI	GGCC	1 cut(s)	27
BtgZI	GCGATG	3 cut(s)	17, 73, 240
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	2 cut(s)	94, 368
BtuMI	TCGCGA	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	25, 241
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	1 cut(s)	315
Cfr10I	RCCGGY	2 cut(s)	23, 200
Cfr13I	GGNCC	1 cut(s)	198
Cfr9I	CCCGGG	1 cut(s)	208
CseI	GACGC	2 cut(s)	29, 245
Csp6I	GTAC	3 cut(s)	181, 329, 395
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	7 cut(s)	27, 129, 204, 220, 413, 426, 445
CviKI_1	RGCY	7 cut(s)	27, 129, 204, 220, 413, 426, 445
CviQI	GTAC	3 cut(s)	181, 329, 395
DdeI	CTNAG	2 cut(s)	357, 422
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
EciI	GGCGGA	2 cut(s)	40, 158
Eco47I	GGWCC	1 cut(s)	198
Eco47III	AGCGCT	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	208
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	257
FaiI	YATR	8 cut(s)	255, 281, 290, 320, 333, 372, 392, 404
FatI	CATG	1 cut(s)	253
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	6 cut(s)	54, 127, 205, 218, 244, 316
Fsp4HI	GCNGC	6 cut(s)	54, 127, 205, 218, 244, 316
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	6 cut(s)	54, 127, 205, 218, 244, 316
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	3 cut(s)	24, 201, 209
HgaI	GACGC	2 cut(s)	29, 245
HhaI	GCGC	1 cut(s)	315
Hin1I	GRCGYC	2 cut(s)	5, 21
Hin1II	CATG	1 cut(s)	257
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	2 cut(s)	166, 250
HpaII	CCGG	3 cut(s)	24, 201, 209
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	3 cut(s)	103, 115, 455
Hpy188III	TCNNGA	3 cut(s)	15, 233, 254
Hpy8I	GTNNAC	1 cut(s)	198
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	3 cut(s)	45, 98, 152
HpyCH4V	TGCA	3 cut(s)	126, 246, 318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 59, 89, 135
HpyF3I	CTNAG	2 cut(s)	357, 422
Hsp92I	GRCGYC	2 cut(s)	5, 21
Hsp92II	CATG	1 cut(s)	257
HspAI	GCGC	1 cut(s)	313
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	229
LpnPI	CCDG	7 cut(s)	37, 214, 222, 235, 324, 383, 440
Lsp1109I	GCAGC	5 cut(s)	138, 191, 229, 230, 302
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	1 cut(s)	64
MluCI	AATT	3 cut(s)	109, 121, 154
MluI	ACGCGT	1 cut(s)	237
MmeI	TCCRAC	2 cut(s)	126, 328
MnlI	CCTC	3 cut(s)	38, 89, 109
MroNI	GCCGGC	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	3 cut(s)	24, 201, 209
MspR9I	CCNGG	2 cut(s)	209, 210
Mva1269I	GAATGC	1 cut(s)	56
MvnI	CGCG	2 cut(s)	16, 239
MwoI	GCNNNNNNNGC	4 cut(s)	33, 59, 89, 135
NaeI	GCCGGC	1 cut(s)	25
NciI	CCSGG	2 cut(s)	209, 210
NdeII	GATC	1 cut(s)	229
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	1 cut(s)	257
NruI	TCGCGA	1 cut(s)	16
PagI	TCATGA	1 cut(s)	253
PctI	GAATGC	1 cut(s)	56
PdiI	GCCGGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	166, 250
PkrI	GCNGC	6 cut(s)	55, 128, 206, 219, 245, 317
PspPI	GGNCC	1 cut(s)	198
RruI	TCGCGA	1 cut(s)	16
RsaI	GTAC	3 cut(s)	182, 330, 396
RsaNI	GTAC	3 cut(s)	181, 329, 395
SatI	GCNGC	6 cut(s)	54, 127, 205, 218, 244, 316
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	198
ScaI	AGTACT	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	209, 210
SetI	ASST	4 cut(s)	120, 280, 348, 447
SinI	GGWCC	1 cut(s)	198
SmaI	CCCGGG	1 cut(s)	210
Sse9I	AATT	3 cut(s)	109, 121, 154
SsiI	CCGC	5 cut(s)	51, 54, 143, 186, 378
StyD4I	CCNGG	2 cut(s)	207, 208
TaaI	ACNGT	3 cut(s)	45, 98, 152
TaqI	TCGA	1 cut(s)	169
TasI	AATT	3 cut(s)	109, 121, 154
TatI	WGTACW	2 cut(s)	180, 328
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	166, 250
TscAI	CASTG	2 cut(s)	101, 368
TseI	GCWGC	5 cut(s)	126, 204, 217, 243, 315
TspDTI	ATGAA	1 cut(s)	242
TspMI	CCCGGG	1 cut(s)	208
TspRI	CASTG	2 cut(s)	101, 368
VpaK11BI	GGWCC	1 cut(s)	198
XmaI	CCCGGG	1 cut(s)	208
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.