Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010511

Physical Location & Seq

Genomic Coordinates Forward (+)

12840589 .. 12843588

Gene Structure 3000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCGGGAATAGTCGTGGTTTTTGACTTTGACCGGACCCTAATCGACGGTGACAGCGATAGCTGGGTGGTGACGGAGATGGGTCTCACTCAGCTCTTCAATGAGATTCGCTCTACTCTTCCATGGAACTCACTCATGGATAGAATGACGGAGGAGCTGCATTTACAAGGAAAAACTTCTGAAGATATTAAGGAGTGTCTTAAAAGAATTCCAATGCACCCGGGGGTAACTGCAGCTATTAAGTCAGCTCACGCTTCGGGATGTGATTTGAGGATAGTTAGCGATGCGAATCAGTTCTTTATTGAGGCTATCTTGGAATGTCATGGTCTGTTAGGATGCTTCTCACAGATCGTCACAAACCCAACCTCTGCAGAACAAGATGGAAGACTCAGAATATTCCCACACTGTGACTTAGGTTCATCGTTTCATGGCTGCAATCTATGCCCTCCAAATTTGTGCAAGGGTGTGGTGATCGACCAAATCCGAGCTTCTGTTTCTGCCAATGGGAGGAAAAGGTTTGTCTACTTAGGAGATGGGAGAAACGATTATTGCCCGAGTTTGAGGCTTGTGGAAGGAGACCATGTAATGCCGAGGAAGGACTACGCTCTATGGAAGCGCATTTGCAGCAACCCGGTGCTTATCAAGGCTGACATCCATGAATGGAGTGATGGAGAGGAGCTCGGGAAGACATTACTTCACCTCATCCACAGAATTTCTTCTGAAGAAAATCAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004427 GO:0006725 GO:0006732 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009987 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0022607 GO:0034641 GO:0042131 GO:0042357 GO:0042578 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0046483 GO:0051186 GO:0051188 GO:0051259 GO:0051262 GO:0065003 GO:0071704 GO:0071840 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

246

Amino Acids

27.44

Weight (kDa)

5.66

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	4 - 235	3.9e-89	Putative Phosphatase
HAD	PF12710	6 - 183	1.1e-09	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29530 AT4G29530
fragaria_vesca	FvH4_1g07100 FvH4_1g07100
malus_domestica	MD15G1204200.v1.1
prunus_persica	Prupe.7G213000_v2.0.a1
pyrus_communis	pycom15g18100
rosa_chinensis	RchiOBHm_Chr2g0092991 RchiOBHm_Chr5g0041441
rosa_laevigata	RLG00000016356
rosa_multiflora	Rmu_co8483593.1_g000001 Rmu_sc0000965.1_g000020
rosa_roxburghii	Rroxscaffold_1G00039130 Rroxscaffold_2G00148640
rosa_rugosa	Rorug02G0031100 Rorug02G0031200
rosa_samantha	Rh2AG077000 Rh2BG078400 Rh2CG080600 Rh2DG075700
rosa_wichuraiana	Rw2G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	522
AciI	CCGC	1 cut(s)	5
AcsI	RAATTY	3 cut(s)	207, 451, 711
AcuI	CTGAAG	1 cut(s)	201
AdeI	CACNNNGTG	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	507
AgsI	TTSAA	1 cut(s)	100
AluBI	AGCT	7 cut(s)	63, 94, 157, 236, 248, 488, 679
AluI	AGCT	7 cut(s)	63, 94, 157, 236, 248, 488, 679
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	2 cut(s)	89, 570
Ama87I	CYCGRG	3 cut(s)	220, 553, 680
ApeKI	GCWGC	4 cut(s)	157, 233, 432, 624
ApoI	RAATTY	3 cut(s)	207, 451, 711
Asp700I	GAANNNNTTC	3 cut(s)	175, 293, 715
AspLEI	GCGC	1 cut(s)	618
AspS9I	GGNCC	1 cut(s)	36
AsuC2I	CCSGG	3 cut(s)	221, 222, 632
AsuHPI	GGTGA	4 cut(s)	62, 82, 481, 689
AvaI	CYCGRG	3 cut(s)	220, 553, 680
AvaII	GGWCC	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	681
BbsI	GAAGAC	2 cut(s)	391, 692
Bbv12I	GWGCWC	1 cut(s)	681
BbvI	GCAGC	4 cut(s)	144, 245, 419, 636
BccI	CCATC	4 cut(s)	73, 374, 527, 662
BcnI	CCSGG	3 cut(s)	221, 222, 632
BcoDI	GTCTC	2 cut(s)	89, 570
BfmI	CTRYAG	2 cut(s)	231, 369
BisI	GCNGC	4 cut(s)	158, 234, 433, 625
BlsI	GCNGC	4 cut(s)	159, 235, 434, 626
Bme1390I	CCNGG	3 cut(s)	221, 222, 632
Bme18I	GGWCC	1 cut(s)	36
BmeT110I	CYCGRG	3 cut(s)	220, 553, 680
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	3 cut(s)	221, 222, 632
BmsI	GCATC	2 cut(s)	274, 326
BpiI	GAAGAC	2 cut(s)	391, 692
BplI	GAGNNNNNCTC	4 cut(s)	95, 127, 663, 695
BpuMI	CCSGG	3 cut(s)	221, 222, 632
BsaBI	GATNNNNATC	1 cut(s)	288
BsaI	GGTCTC	2 cut(s)	89, 570
BsaJI	CCNNGG	4 cut(s)	122, 220, 221, 590
BsaWI	WCCGGW	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	507
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	4 cut(s)	122, 220, 221, 590
BseGI	GGATG	4 cut(s)	266, 341, 651, 702
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	104, 403
BseRI	GAGGAG	2 cut(s)	167, 689
BseXI	GCAGC	4 cut(s)	144, 245, 419, 636
BseYI	CCCAGC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	681
BsiHKCI	CYCGRG	3 cut(s)	220, 553, 680
BsiSI	CCGG	3 cut(s)	34, 221, 632
BslI	CCNNNNNNNGG	1 cut(s)	507
BsmAI	GTCTC	2 cut(s)	89, 570
Bso31I	GGTCTC	2 cut(s)	89, 570
BsoBI	CYCGRG	3 cut(s)	220, 553, 680
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	2 cut(s)	348, 471
Bsp19I	CCATGG	1 cut(s)	122
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	103, 402
BspLI	GGNNCC	1 cut(s)	38
BspMAI	CTGCAG	2 cut(s)	235, 373
BspQI	GCTCTTC	1 cut(s)	101
BspTNI	GGTCTC	2 cut(s)	89, 570
BssECI	CCNNGG	4 cut(s)	122, 220, 221, 590
BssMI	GATC	2 cut(s)	348, 471
BssT1I	CCWWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	50, 407
Bst6I	CTCTTC	2 cut(s)	101, 123
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstDEI	CTNAG	4 cut(s)	90, 389, 412, 526
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	4 cut(s)	266, 341, 651, 702
BstHHI	GCGC	1 cut(s)	618
BstKTI	GATC	2 cut(s)	351, 474
BstMAI	GTCTC	2 cut(s)	89, 570
BstMBI	GATC	2 cut(s)	348, 471
BstMWI	GCNNNNNNNGC	2 cut(s)	441, 624
BstSCI	CCNGG	3 cut(s)	219, 220, 630
BstSFI	CTRYAG	2 cut(s)	231, 369
BstV1I	GCAGC	4 cut(s)	144, 245, 419, 636
BstV2I	GAAGAC	2 cut(s)	391, 692
BtgI	CCRYGG	1 cut(s)	122
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	4 cut(s)	266, 341, 651, 702
BtsIMutI	CAGTG	1 cut(s)	403
CfoI	GCGC	1 cut(s)	618
Cfr13I	GGNCC	1 cut(s)	36
Cfr9I	CCCGGG	1 cut(s)	220
CviAII	CATG	6 cut(s)	123, 136, 323, 428, 581, 656
DdeI	CTNAG	4 cut(s)	90, 389, 412, 526
DpnI	GATC	2 cut(s)	350, 473
DpnII	GATC	2 cut(s)	348, 471
DraIII	CACNNNGTG	1 cut(s)	407
Eam1104I	CTCTTC	2 cut(s)	101, 123
EarI	CTCTTC	2 cut(s)	101, 123
Ecl136II	GAGCTC	1 cut(s)	679
Eco130I	CCWWGG	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	681
Eco31I	GGTCTC	2 cut(s)	89, 570
Eco47I	GGWCC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	201
Eco88I	CYCGRG	3 cut(s)	220, 553, 680
EcoICRI	GAGCTC	1 cut(s)	679
EcoRI	GAATTC	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	122
EcoT38I	GRGCYC	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	122
FaeI	CATG	6 cut(s)	126, 139, 326, 431, 584, 659
FaiI	YATR	8 cut(s)	124, 137, 324, 429, 442, 582, 610, 657
FatI	CATG	6 cut(s)	122, 135, 322, 427, 580, 655
FblI	GTMKAC	1 cut(s)	522
Fnu4HI	GCNGC	4 cut(s)	158, 234, 433, 625
FokI	GGATG	4 cut(s)	273, 348, 638, 689
FriOI	GRGCYC	1 cut(s)	681
Fsp4HI	GCNGC	4 cut(s)	158, 234, 433, 625
GlaI	GCGC	1 cut(s)	617
GluI	GCNGC	4 cut(s)	158, 234, 433, 625
GsaI	CCCAGC	1 cut(s)	67
HapII	CCGG	3 cut(s)	34, 221, 632
HhaI	GCGC	1 cut(s)	618
Hin1II	CATG	6 cut(s)	126, 139, 326, 431, 584, 659
Hin6I	GCGC	1 cut(s)	616
HinP1I	GCGC	1 cut(s)	616
HinfI	GANTC	3 cut(s)	106, 289, 387
HpaII	CCGG	3 cut(s)	34, 221, 632
HphI	GGTGA	4 cut(s)	62, 82, 481, 689
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	4 cut(s)	181, 392, 485, 721
Hpy188III	TCNNGA	2 cut(s)	258, 682
Hpy8I	GTNNAC	1 cut(s)	523
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	566, 589
HpyCH4III	ACNGT	2 cut(s)	50, 407
HpyCH4V	TGCA	7 cut(s)	160, 217, 233, 371, 435, 459, 624
HpyF10VI	GCNNNNNNNGC	2 cut(s)	441, 624
HpyF3I	CTNAG	4 cut(s)	90, 389, 412, 526
Hsp92II	CATG	6 cut(s)	126, 139, 326, 431, 584, 659
HspAI	GCGC	1 cut(s)	616
Kzo9I	GATC	2 cut(s)	348, 471
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	2 cut(s)	154, 676
LpnPI	CCDG	4 cut(s)	47, 49, 234, 645
Lsp1109I	GCAGC	4 cut(s)	144, 245, 419, 636
LweI	GCATC	2 cut(s)	274, 326
MaeIII	GTNAC	5 cut(s)	50, 70, 226, 352, 407
MalI	GATC	2 cut(s)	350, 473
MboI	GATC	2 cut(s)	348, 471
MboII	GAAGA	7 cut(s)	88, 110, 194, 396, 697, 708, 734
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	3 cut(s)	207, 451, 711
MlyI	GAGTC	1 cut(s)	381
MroXI	GAANNNNTTC	3 cut(s)	175, 293, 715
MseI	TTAA	3 cut(s)	189, 201, 240
MspI	CCGG	3 cut(s)	34, 221, 632
MspR9I	CCNGG	3 cut(s)	221, 222, 632
MwoI	GCNNNNNNNGC	2 cut(s)	441, 624
NciI	CCSGG	3 cut(s)	221, 222, 632
NcoI	CCATGG	1 cut(s)	122
NdeII	GATC	2 cut(s)	348, 471
NlaIII	CATG	6 cut(s)	126, 139, 326, 431, 584, 659
NlaIV	GGNNCC	1 cut(s)	38
NmeAIII	GCCGAG	1 cut(s)	615
NmuCI	GTSAC	4 cut(s)	50, 70, 352, 407
PciSI	GCTCTTC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdmI	GAANNNNTTC	3 cut(s)	175, 293, 715
PfeI	GAWTC	2 cut(s)	106, 289
PkrI	GCNGC	4 cut(s)	159, 235, 434, 626
PleI	GAGTC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	381
Psp124BI	GAGCTC	1 cut(s)	681
PspFI	CCCAGC	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	36
PstI	CTGCAG	2 cut(s)	235, 373
SacI	GAGCTC	1 cut(s)	681
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	3 cut(s)	189, 201, 240
SatI	GCNGC	4 cut(s)	158, 234, 433, 625
Sau3AI	GATC	2 cut(s)	348, 471
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	3 cut(s)	221, 222, 632
SduI	GDGCHC	1 cut(s)	681
SfaNI	GCATC	2 cut(s)	274, 326
SfcI	CTRYAG	2 cut(s)	231, 369
SinI	GGWCC	1 cut(s)	36
SmaI	CCCGGG	1 cut(s)	222
Sse9I	AATT	3 cut(s)	207, 451, 711
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	396
SstI	GAGCTC	1 cut(s)	681
StyD4I	CCNGG	3 cut(s)	219, 220, 630
StyI	CCWWGG	1 cut(s)	122
TaaI	ACNGT	2 cut(s)	50, 407
TaqI	TCGA	2 cut(s)	45, 474
TasI	AATT	3 cut(s)	207, 451, 711
TfiI	GAWTC	2 cut(s)	106, 289
Tru1I	TTAA	3 cut(s)	189, 201, 240
Tru9I	TTAA	3 cut(s)	189, 201, 240
TscAI	CASTG	1 cut(s)	410
TseFI	GTSAC	4 cut(s)	50, 70, 352, 407
TseI	GCWGC	4 cut(s)	157, 233, 432, 624
Tsp45I	GTSAC	4 cut(s)	50, 70, 352, 407
TspDTI	ATGAA	3 cut(s)	408, 416, 672
TspGWI	ACGGA	2 cut(s)	89, 164
TspMI	CCCGGG	1 cut(s)	220
TspRI	CASTG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	3 cut(s)	207, 451, 711
XmaI	CCCGGG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	522
XmnI	GAANNNNTTC	3 cut(s)	175, 293, 715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.