pycom15g19050

Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
13528930 .. 13530545
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1563 bp
ATGGTGCACCTAATTCAGATGCTCCAAATGCATTGCCTAATGGCAGGGCAGAATATCAGACCTACTTTTCATTCCGAGAGGCCGAATGTCAGACCTCGTCTTCATCCTGAAAGCTCTGCACACAATGCGCCAAATATTCGAACTACTGTTCAACCTCCTTACCAACCACCTCCACATTACAAAAATCGTGGTCCAATCATGAAGAATGAGGCACCAGCACGGATCATTCCCATTAACGCTCTGAATCCTTATCAGGGAAGATGGGCTATCAAGGCAAGGGTCACAGCAAAAGGGGACCCCCGTCGGTATAATAATGCTAAAGGAGACGGTAAAGTTTTCTCTTTCGACCTGCTTGACTCTGAAGGAGGGGAAATAAGAGTTACCTGCTTCAATGCTGTTCTTGACCGCTTCTATGATATTATTGAGGTTGGCAGAGTTTACTTGATTTCAAAGGGAAGCTTGAAACCTGCACAGAAGAATTTCAACCATCTGAAGAATGACTGGGAGATAACTTTGGATGCAAGTTCAACTGTGGACCTCTGCCCTGATGAAGATGGTTCCATACCAGCGCAAAACTTCAACTTCAGGCCAATTAGTGAAATTGAAAATGCTGAAAGTAATTCTATTGTTGATGTTATTGGTATTGTGATATCTGTCAATCCTTCTGTTCCTATCATGAGGAAGAATGGTATGGAAACTCAGAGAAGAATTCTGAATCTAAAGGATTGGTCGGGCAAGACCGTTGAGCTAACCCTTTGGGGGGATGTCTGCAACAGGGAAGGTCAAAAGCTTGAAGAGATGTTGGCTTCTGGGTTTTCCCCAGTTTTAGCTGTTAAAGCTGGGAAGATTAATGATTTCAGTGGGAAGTCCGTTGGAACAATTCATTCTACACAACTATTTATAAACCCAGAAATTTCTGATGCTCTTACCTTGAGAGACTGGTTTGACCGAGGGGGCAAGGATACTGCTTCTGTCTCCATTTCTAAAGACTTTGTTCCAGGAGGAACTAAGAATGAGATACGCAAAACCATTTCTCAGATTAAGGATGAAGGTCTTGGAAGATCAGATAAGCCAGACTGGGTCACTGTGATGGCGACAATATCTTTCATTAAGACAGATTCTTTCTGTTACACAGCCTGTCCCTTGATGATTGGAGATAGGCAGTGCAATAAAAAGGTGTCGAGGTCAGGAAACAGAGGATGGCAGTGTGACAGGTGCAATCAAGAATTCGAGGAGTGTGATTATCGGTATCTTCTTCAGGCCCAAATTCAAGACCATACAGGATTGACTTGGGCGACGGCTTTTCAGGAAACTGGGGAAGAGATCTTGGGTTGCTCAGCAAAGGAGCTGTACTTGTTGAAGTACGAAGAGCAGGATGATTCAAGATTTGGAGACATAGTCCGGAGCAGTATCTTTAACCAGTTTCTGTTCAAGCTTAAAATCAAAGAGGAGACGTATGGCGATGAGCAGAGGGTGAAGATCACCATAGTGAAGGCGGATAAGGTGAACTATTCTTCAGACAGCAGATACATGCTTGATATGATTTCGAAATATTCTAGGTAA

Protein Analysis

521

Amino Acids

58.87

Weight (kDa)

7.91

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_anti-codon PF01336 89 - 169 6.9e-08 OB-fold nucleic acid binding domain
REPA_OB_2 PF16900 198 - 302 6.9e-28 Replication protein A OB domain
Rep_fac-A_C PF08646 360 - 511 5.8e-51 Replication factor-A C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012807)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 902
Acc36I ACCTGC 3 cut(s) 357, 392, 475
AccB1I GGYRCC 1 cut(s) 211
AccIII TCCGGA 1 cut(s) 1401
AciI CCGC 2 cut(s) 406, 1496
AclWI GGATC 1 cut(s) 230
AcsI RAATTY 5 cut(s) 478, 708, 912, 1226, 1266
AcuI CTGAAG 5 cut(s) 381, 512, 568, 1241, 1500
AfaI GTAC 2 cut(s) 1352, 1364
AfiI CCNNNNNNNGG 3 cut(s) 254, 759, 760
AjnI CCWGG 1 cut(s) 997
AleI CACNNNNGTG 1 cut(s) 1487
AluBI AGCT 8 cut(s) 114, 459, 748, 790, 830, 839, 1348, 1435
AluI AGCT 8 cut(s) 114, 459, 748, 790, 830, 839, 1348, 1435
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 5 cut(s) 318, 930, 979, 1386, 1445
Alw44I GTGCAC 1 cut(s) 5
AlwI GGATC 1 cut(s) 230
AlwNI CAGNNNCTG 1 cut(s) 1426
Aor13HI TCCGGA 1 cut(s) 1401
AoxI GGCC 3 cut(s) 80, 587, 1260
ApaLI GTGCAC 1 cut(s) 5
ApoI RAATTY 5 cut(s) 478, 708, 912, 1226, 1266
AseI ATTAAT 1 cut(s) 849
Asp700I GAANNNNTTC 1 cut(s) 479
AspLEI GCGC 2 cut(s) 130, 571
AspS9I GGNCC 4 cut(s) 191, 295, 535, 1261
AsuHPI GGTGA 3 cut(s) 1474, 1486, 1516
AsuII TTCGAA 2 cut(s) 139, 1547
AvaII GGWCC 3 cut(s) 191, 295, 535
BaeGI GKGCMC 1 cut(s) 9
BanI GGYRCC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 9
BccI CCATC 5 cut(s) 255, 495, 548, 1084, 1194
BceAI ACGGC 1 cut(s) 1314
BciT130I CCWGG 1 cut(s) 999
BciVI GTATCC 1 cut(s) 955
BcoDI GTCTC 5 cut(s) 318, 930, 979, 1386, 1445
BfaI CTAG 1 cut(s) 1557
BfuAI ACCTGC 3 cut(s) 357, 392, 475
BfuI GTATCC 1 cut(s) 955
BglII AGATCT 1 cut(s) 1323
BlpI GCTNAGC 1 cut(s) 1336
Bme1390I CCNGG 1 cut(s) 999
Bme18I GGWCC 3 cut(s) 191, 295, 535
BmgT120I GGNCC 4 cut(s) 191, 295, 535, 1261
BmiI GGNNCC 4 cut(s) 213, 296, 297, 559
BmrFI CCNGG 1 cut(s) 999
BmrI ACTGGG 4 cut(s) 511, 815, 1087, 1323
BmsI GCATC 3 cut(s) 9, 508, 910
BmuI ACTGGG 4 cut(s) 511, 815, 1087, 1323
BoxI GACNNNNGTC 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 92
Bpu1102I GCTNAGC 1 cut(s) 1336
Bpu14I TTCGAA 2 cut(s) 139, 1547
BpuEI CTTGAG 1 cut(s) 952
BsaJI CCNNGG 1 cut(s) 949
BsaWI WCCGGW 1 cut(s) 1401
BsaXI ACNNNNNCTCC 2 cut(s) 1383, 1413
Bsc4I CCNNNNNNNGG 3 cut(s) 254, 759, 760
Bse1I ACTGG 6 cut(s) 506, 821, 944, 1082, 1318, 1420
Bse3DI GCAATG 1 cut(s) 31
BseAI TCCGGA 1 cut(s) 1401
BseBI CCWGG 1 cut(s) 999
BseDI CCNNGG 1 cut(s) 949
BseGI GGATG 6 cut(s) 103, 523, 769, 1051, 1205, 1381
BseLI CCNNNNNNNGG 3 cut(s) 254, 759, 760
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 3 cut(s) 713, 1049, 1350
BseNI ACTGG 6 cut(s) 506, 821, 944, 1082, 1318, 1420
BseRI GAGGAG 2 cut(s) 1247, 1463
BseSI GKGCMC 1 cut(s) 9
BseYI CCCAGC 1 cut(s) 839
BsgI GTGCAG 2 cut(s) 102, 453
BshFI GGCC 3 cut(s) 82, 589, 1262
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 1402
BslFI GGGAC 2 cut(s) 308, 1125
BslI CCNNNNNNNGG 3 cut(s) 254, 759, 760
BsmAI GTCTC 5 cut(s) 318, 930, 979, 1386, 1445
BsmBI CGTCTC 2 cut(s) 318, 1445
BsmFI GGGAC 2 cut(s) 308, 1125
BsnI GGCC 3 cut(s) 82, 589, 1262
Bsp119I TTCGAA 2 cut(s) 139, 1547
Bsp1286I GDGCHC 1 cut(s) 9
Bsp13I TCCGGA 1 cut(s) 1401
Bsp143I GATC 4 cut(s) 222, 1061, 1323, 1479
Bsp1720I GCTNAGC 1 cut(s) 1336
BspACI CCGC 2 cut(s) 406, 1496
BspANI GGCC 3 cut(s) 82, 589, 1262
BspCNI CTCAG 3 cut(s) 712, 1048, 1349
BspEI TCCGGA 1 cut(s) 1401
BspHI TCATGA 2 cut(s) 198, 675
BspLI GGNNCC 4 cut(s) 213, 296, 297, 559
BspMI ACCTGC 3 cut(s) 357, 392, 475
BspPI GGATC 1 cut(s) 230
BspQI GCTCTTC 1 cut(s) 1362
BspT104I TTCGAA 2 cut(s) 139, 1547
BspT107I GGYRCC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 31
BsrI ACTGG 6 cut(s) 506, 821, 944, 1082, 1318, 1420
BssECI CCNNGG 1 cut(s) 949
BssMI GATC 4 cut(s) 222, 1061, 1323, 1479
Bst2UI CCWGG 1 cut(s) 999
Bst4CI ACNGT 5 cut(s) 148, 329, 532, 742, 1087
Bst6I CTCTTC 3 cut(s) 789, 1314, 1362
BstAPI GCANNNNNTGC 1 cut(s) 125
BstBI TTCGAA 2 cut(s) 139, 1547
BstDEI CTNAG 4 cut(s) 699, 1008, 1035, 1336
BstF5I GGATG 6 cut(s) 103, 523, 769, 1051, 1205, 1381
BstHHI GCGC 2 cut(s) 130, 571
BstKTI GATC 4 cut(s) 225, 1064, 1326, 1482
BstMAI GTCTC 5 cut(s) 318, 930, 979, 1386, 1445
BstMBI GATC 4 cut(s) 222, 1061, 1323, 1479
BstMWI GCNNNNNNNGC 4 cut(s) 28, 125, 272, 836
BstNI CCWGG 1 cut(s) 999
BstNSI RCATGY 1 cut(s) 1534
BstPAI GACNNNNGTC 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 997
BstSLI GKGCMC 1 cut(s) 9
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 1323
BstYI RGATCY 1 cut(s) 1323
BsuI GTATCC 1 cut(s) 955
BsuRI GGCC 3 cut(s) 82, 589, 1262
BtgZI GCGATG 1 cut(s) 1476
BtsCI GGATG 6 cut(s) 103, 523, 769, 1051, 1205, 1381
BtsI GCAGTG 2 cut(s) 1169, 1211
BtsIMutI CAGTG 4 cut(s) 865, 1083, 1169, 1211
BveI ACCTGC 3 cut(s) 357, 392, 475
CaiI CAGNNNCTG 1 cut(s) 1426
CciI TCATGA 2 cut(s) 198, 675
CfoI GCGC 2 cut(s) 130, 571
Cfr13I GGNCC 4 cut(s) 191, 295, 535, 1261
Csp6I GTAC 2 cut(s) 1351, 1363
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviAII CATG 3 cut(s) 199, 676, 1531
CviQI GTAC 2 cut(s) 1351, 1363
DdeI CTNAG 4 cut(s) 699, 1008, 1035, 1336
DpnI GATC 4 cut(s) 224, 1063, 1325, 1481
DpnII GATC 4 cut(s) 222, 1061, 1323, 1479
Eam1104I CTCTTC 3 cut(s) 789, 1314, 1362
EarI CTCTTC 3 cut(s) 789, 1314, 1362
EciI GGCGGA 1 cut(s) 1511
Eco32I GATATC 1 cut(s) 651
Eco47I GGWCC 3 cut(s) 191, 295, 535
Eco57I CTGAAG 5 cut(s) 381, 512, 568, 1241, 1500
EcoO109I RGGNCCY 1 cut(s) 295
EcoRI GAATTC 2 cut(s) 708, 1226
EcoRII CCWGG 1 cut(s) 997
EcoRV GATATC 1 cut(s) 651
EcoT22I ATGCAT 1 cut(s) 33
Esp3I CGTCTC 2 cut(s) 318, 1445
FaeI CATG 3 cut(s) 202, 679, 1534
FalI AAGNNNNNCTT 2 cut(s) 443, 475
FaqI GGGAC 2 cut(s) 308, 1125
FatI CATG 3 cut(s) 198, 675, 1530
FokI GGATG 6 cut(s) 90, 530, 776, 1058, 1212, 1388
FspBI CTAG 1 cut(s) 1557
GlaI GCGC 2 cut(s) 129, 570
GsaI CCCAGC 1 cut(s) 843
HaeIII GGCC 3 cut(s) 82, 589, 1262
HapII CCGG 1 cut(s) 1402
HhaI GCGC 2 cut(s) 130, 571
Hin1II CATG 3 cut(s) 202, 679, 1534
Hin6I GCGC 2 cut(s) 128, 569
HinP1I GCGC 2 cut(s) 128, 569
HindIII AAGCTT 3 cut(s) 457, 788, 1433
HinfI GANTC 5 cut(s) 244, 356, 715, 1118, 1379
HpaII CCGG 1 cut(s) 1402
HphI GGTGA 3 cut(s) 1474, 1486, 1516
Hpy166II GTNNAC 4 cut(s) 7, 439, 535, 1507
Hpy8I GTNNAC 4 cut(s) 7, 439, 535, 1507
Hpy99I CGWCG 2 cut(s) 306, 1300
HpyAV CCTTC 5 cut(s) 356, 672, 773, 1043, 1486
HpyCH4III ACNGT 5 cut(s) 148, 329, 532, 742, 1087
HpyCH4IV ACGT 1 cut(s) 1454
HpyCH4V TGCA 8 cut(s) 7, 31, 119, 470, 521, 771, 1167, 1218
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 125, 272, 836
HpyF3I CTNAG 4 cut(s) 699, 1008, 1035, 1336
HpySE526I ACGT 1 cut(s) 1454
Hsp92II CATG 3 cut(s) 202, 679, 1534
HspAI GCGC 2 cut(s) 128, 569
KflI GGGWCCC 1 cut(s) 295
Kpn2I TCCGGA 1 cut(s) 1401
Kzo9I GATC 4 cut(s) 222, 1061, 1323, 1479
LguI GCTCTTC 1 cut(s) 1362
LmnI GCTCC 3 cut(s) 27, 1345, 1404
LweI GCATC 3 cut(s) 9, 508, 910
MaeI CTAG 1 cut(s) 1557
MaeII ACGT 1 cut(s) 1454
MaeIII GTNAC 5 cut(s) 280, 379, 1081, 1127, 1208
MalI GATC 4 cut(s) 224, 1063, 1325, 1481
MboI GATC 4 cut(s) 222, 1061, 1323, 1479
MflI RGATCY 1 cut(s) 1323
MhlI GDGCHC 1 cut(s) 9
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 853
Mph1103I ATGCAT 1 cut(s) 33
MroI TCCGGA 1 cut(s) 1401
MroXI GAANNNNTTC 1 cut(s) 479
MseI TTAA 7 cut(s) 234, 834, 849, 1041, 1110, 1416, 1437
MslI CAYNNNNRTG 2 cut(s) 1088, 1487
MspI CCGG 1 cut(s) 1402
MspR9I CCNGG 1 cut(s) 999
MvaI CCWGG 1 cut(s) 999
MwoI GCNNNNNNNGC 4 cut(s) 28, 125, 272, 836
NdeII GATC 4 cut(s) 222, 1061, 1323, 1479
NlaIII CATG 3 cut(s) 202, 679, 1534
NlaIV GGNNCC 4 cut(s) 213, 296, 297, 559
NmuCI GTSAC 3 cut(s) 280, 1081, 1208
NsiI ATGCAT 1 cut(s) 33
NspI RCATGY 1 cut(s) 1534
NspV TTCGAA 2 cut(s) 139, 1547
OliI CACNNNNGTG 1 cut(s) 1487
PagI TCATGA 2 cut(s) 198, 675
PciSI GCTCTTC 1 cut(s) 1362
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 4 cut(s) 244, 715, 1118, 1379
PflFI GACNNNGTC 3 cut(s) 96, 1079, 1397
PfoI TCCNGGA 1 cut(s) 997
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
PpuMI RGGWCCY 1 cut(s) 295
PshAI GACNNNNGTC 1 cut(s) 300
PshBI ATTAAT 1 cut(s) 849
PsiI TTATAA 1 cut(s) 902
Psp5II RGGWCCY 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 997
PspFI CCCAGC 1 cut(s) 839
PspGI CCWGG 1 cut(s) 997
PspN4I GGNNCC 4 cut(s) 213, 296, 297, 559
PspPI GGNCC 4 cut(s) 191, 295, 535, 1261
PspPPI RGGWCCY 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 1426
PsuI RGATCY 1 cut(s) 1323
PsyI GACNNNGTC 3 cut(s) 96, 1079, 1397
RsaI GTAC 2 cut(s) 1352, 1364
RsaNI GTAC 2 cut(s) 1351, 1363
RseI CAYNNNNRTG 2 cut(s) 1088, 1487
SapI GCTCTTC 1 cut(s) 1362
SaqAI TTAA 7 cut(s) 234, 834, 849, 1041, 1110, 1416, 1437
Sau3AI GATC 4 cut(s) 222, 1061, 1323, 1479
Sau96I GGNCC 4 cut(s) 191, 295, 535, 1261
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 999
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 3 cut(s) 9, 508, 910
SfuI TTCGAA 2 cut(s) 139, 1547
SinI GGWCC 3 cut(s) 191, 295, 535
SmiMI CAYNNNNRTG 2 cut(s) 1088, 1487
SmlI CTYRAG 1 cut(s) 931
SmoI CTYRAG 1 cut(s) 931
SsiI CCGC 2 cut(s) 406, 1496
SspI AATATT 2 cut(s) 136, 1553
SspMI CTAG 1 cut(s) 1557
StyD4I CCNGG 1 cut(s) 997
TaaI ACNGT 5 cut(s) 148, 329, 532, 742, 1087
TaiI ACGT 1 cut(s) 1457
TaqI TCGA 5 cut(s) 139, 345, 1181, 1230, 1547
TaqII GACCGA 1 cut(s) 963
TatI WGTACW 1 cut(s) 1350
TfiI GAWTC 4 cut(s) 244, 715, 1118, 1379
Tru1I TTAA 7 cut(s) 234, 834, 849, 1041, 1110, 1416, 1437
Tru9I TTAA 7 cut(s) 234, 834, 849, 1041, 1110, 1416, 1437
TscAI CASTG 4 cut(s) 865, 1090, 1169, 1211
TseFI GTSAC 3 cut(s) 280, 1081, 1208
Tsp45I GTSAC 3 cut(s) 280, 1081, 1208
TspDTI ATGAA 7 cut(s) 59, 92, 215, 564, 872, 1062, 1096
TspGWI ACGGA 2 cut(s) 235, 859
TspRI CASTG 4 cut(s) 865, 1090, 1169, 1211
Tth111I GACNNNGTC 3 cut(s) 96, 1079, 1397
VneI GTGCAC 1 cut(s) 5
VpaK11BI GGWCC 3 cut(s) 191, 295, 535
VspI ATTAAT 1 cut(s) 849
XapI RAATTY 5 cut(s) 478, 708, 912, 1226, 1266
XceI RCATGY 1 cut(s) 1534
XmnI GAANNNNTTC 1 cut(s) 479
XspI CTAG 1 cut(s) 1557
Zsp2I ATGCAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.