pycom15g19120
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0016234
Physical Location & Seq
Forward (+)
13630212 .. 13631462
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 969 bp
ATGGGGAGAAGCCCTTGTTGTGCAAAGGAGGGCTTGAACAGAGGCGCTTGGACTGCTCATGAAGACAAAGTTCTCACTCAATACATCAAGCTCCATGGTGAAGGCAGATGGAGAAACCTTCCCAAAAAAGCAGGTTTGAAAAGATGTGGGAAGAGCTGCAGGCTTAGGTGGTTGAATTATCTGAGGCCAGACATTAAGAGAGGCAACATATCTCCAGATGAAGACGAGCTTATCATTAGGCTTCACAAGCTTCTGGGGAACAGATGGTCTCTAATAGCTGGTAGGCTTCCAGGGCGAACAGACAATGAAATAAAGAACTACTGGAACACAAATTTAGGTAAAAAAGTTCATGACCAACAACAACAAAGATCTGCTTCAAATCTCAAGCACCACAAAAATGGTGAACCAAATTCCAAGAACGCAAAAAGTACGGACATGGCATCACCATCATCCCTTGTTTACCGTACCAAAGCTGCCAAGTGTACCCAAGTTTTCATCAACCCACAGCCACACAAAGTCCTACTTGCTCATGATCATCAACACTGCACTGAAGAAACAAACACAGTACTAATGTTTGATGACAAGCCAGCTGCTATGGATGATGACCACATTAATAGGGCACTGTCGTTTTCTTCATTCTCTAATATCAATGCTGATCAAGAAAATTCAACCTCGGATTTTTTGGTGGATTTTGACATAGCCAGTCTTCTGAATTCGGACTTCCCTGAAATTAATCACGATTACTTGAATCATAATAATAGTGACAATATTACGTCACATTTTGTAGATGAAACCGCTCAATTTTTTTCAGAGGAAATGCTGCAACATTGGAATAATGGTGGTAGCGATGATGGTGATGATCAAGTTCAAGTTCAGCCAAATTTGGCTCTCAATTTCCATTCCTTCACTTCTTTTCTGGGTTCTGATCATCAAGGGGAAGAATGGCTTGGAGTTGGAGAGAGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

323

Amino Acids

36.53

Weight (kDa)

6.17

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.1e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 1.3e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 2.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08390 FvH4_1g08390
malus_domestica MD02G1087900.v1.1 MD15G1215500.v1.1
prunus_persica Prupe.7G201600_v2.0.a1
pyrus_communis pycom02g07060 pycom15g19120
rosa_chinensis RchiOBHm_Chr2g0094491
rosa_laevigata RLG00000016495
rosa_multiflora Rmu_sc0004359.1_g000048
rosa_roxburghii Rroxscaffold_2G00147130
rosa_rugosa Rorug02G0044200
rosa_samantha Rh2BG092700 Rh2CG095200 Rh2DG091500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 122
AccBSI CCGCTC 1 cut(s) 797
AciI CCGC 1 cut(s) 795
AcsI RAATTY 5 cut(s) 331, 409, 664, 712, 880
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 4 cut(s) 430, 466, 484, 567
AgsI TTSAA 7 cut(s) 37, 139, 175, 378, 669, 748, 869
AjnI CCWGG 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 930, 962
AluBI AGCT 7 cut(s) 91, 156, 229, 250, 278, 473, 590
AluI AGCT 7 cut(s) 91, 156, 229, 250, 278, 473, 590
Alw26I GTCTC 1 cut(s) 273
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 4 cut(s) 156, 473, 590, 820
ApoI RAATTY 5 cut(s) 331, 409, 664, 712, 880
AseI ATTAAT 2 cut(s) 612, 732
AspLEI GCGC 1 cut(s) 47
AsuHPI GGTGA 4 cut(s) 110, 413, 435, 866
BaeGI GKGCMC 1 cut(s) 622
BbsI GAAGAC 3 cut(s) 69, 228, 698
BbvI GCAGC 4 cut(s) 143, 460, 577, 807
BccI CCATC 4 cut(s) 102, 258, 454, 845
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 4 cut(s) 532, 655, 859, 925
BcoDI GTCTC 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 122
BglII AGATCT 1 cut(s) 368
BisI GCNGC 4 cut(s) 157, 474, 591, 821
BlsI GCNGC 4 cut(s) 158, 475, 592, 822
BmcAI AGTACT 1 cut(s) 567
Bme1390I CCNGG 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 449
BpiI GAAGAC 3 cut(s) 69, 228, 698
BpmI CTGGAG 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 3 cut(s) 94, 290, 672
Bse1I ACTGG 2 cut(s) 326, 702
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 94, 290, 672
BseGI GGATG 2 cut(s) 449, 604
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 2 cut(s) 326, 702
BseSI GKGCMC 1 cut(s) 622
BseXI GCAGC 4 cut(s) 143, 460, 577, 807
BsgI GTGCAG 1 cut(s) 529
BshFI GGCC 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 273
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 5 cut(s) 368, 532, 655, 859, 925
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 1 cut(s) 795
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 174
BspHI TCATGA 3 cut(s) 58, 349, 529
BspMAI CTGCAG 1 cut(s) 161
BspMI ACCTGC 1 cut(s) 122
BspQI GCTCTTC 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 273
BsrBI CCGCTC 1 cut(s) 797
BsrI ACTGG 2 cut(s) 326, 702
BssECI CCNNGG 3 cut(s) 94, 290, 672
BssMI GATC 5 cut(s) 368, 532, 655, 859, 925
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 464, 565, 624
Bst6I CTCTTC 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 161, 588
BstDEI CTNAG 2 cut(s) 164, 182
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 449, 604
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 5 cut(s) 371, 535, 658, 862, 928
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 5 cut(s) 368, 532, 655, 859, 925
BstMWI GCNNNNNNNGC 3 cut(s) 53, 247, 292
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 622
BstV1I GCAGC 4 cut(s) 143, 460, 577, 807
BstV2I GAAGAC 3 cut(s) 69, 228, 698
BstX2I RGATCY 1 cut(s) 368
BstXI CCANNNNNNTGG 1 cut(s) 398
BstYI RGATCY 1 cut(s) 368
BsuRI GGCC 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 94
BtgZI GCGATG 1 cut(s) 861
BtsCI GGATG 2 cut(s) 449, 604
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 3 cut(s) 541, 546, 620
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 2 cut(s) 161, 588
CciI TCATGA 3 cut(s) 58, 349, 529
CfoI GCGC 1 cut(s) 47
Csp6I GTAC 4 cut(s) 429, 465, 483, 566
CviAII CATG 5 cut(s) 59, 95, 350, 436, 530
CviQI GTAC 4 cut(s) 429, 465, 483, 566
DdeI CTNAG 2 cut(s) 164, 182
DpnI GATC 5 cut(s) 370, 534, 657, 861, 927
DpnII GATC 5 cut(s) 368, 532, 655, 859, 925
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 570
EcoRI GAATTC 1 cut(s) 712
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 5 cut(s) 62, 98, 353, 439, 533
FaiI YATR 9 cut(s) 60, 96, 209, 351, 437, 531, 596, 698, 753
FatI CATG 5 cut(s) 58, 94, 349, 435, 529
FbaI TGATCA 4 cut(s) 532, 655, 859, 925
Fnu4HI GCNGC 4 cut(s) 157, 474, 591, 821
FokI GGATG 2 cut(s) 436, 611
Fsp4HI GCNGC 4 cut(s) 157, 474, 591, 821
GlaI GCGC 1 cut(s) 46
GluI GCNGC 4 cut(s) 157, 474, 591, 821
GsuI CTGGAG 1 cut(s) 198
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 1 cut(s) 187
HhaI GCGC 1 cut(s) 47
Hin1II CATG 5 cut(s) 62, 98, 353, 439, 533
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 1 cut(s) 748
HphI GGTGA 4 cut(s) 110, 413, 435, 866
Hpy166II GTNNAC 3 cut(s) 404, 460, 483
Hpy188I TCNGA 6 cut(s) 183, 676, 711, 718, 811, 925
Hpy188III TCNNGA 6 cut(s) 59, 215, 350, 530, 659, 737
Hpy8I GTNNAC 3 cut(s) 404, 460, 483
HpyAV CCTTC 3 cut(s) 95, 128, 913
HpyCH4III ACNGT 3 cut(s) 464, 565, 624
HpyCH4IV ACGT 1 cut(s) 773
HpyCH4V TGCA 4 cut(s) 23, 159, 546, 823
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 247, 292
HpyF3I CTNAG 2 cut(s) 164, 182
HpySE526I ACGT 1 cut(s) 773
Hsp92II CATG 5 cut(s) 62, 98, 353, 439, 533
HspAI GCGC 1 cut(s) 45
Ksp22I TGATCA 4 cut(s) 532, 655, 859, 925
Kzo9I GATC 5 cut(s) 368, 532, 655, 859, 925
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 1 cut(s) 96
Lsp1109I GCAGC 4 cut(s) 143, 460, 577, 807
LweI GCATC 1 cut(s) 449
MaeII ACGT 1 cut(s) 773
MaeIII GTNAC 2 cut(s) 761, 774
MalI GATC 5 cut(s) 370, 534, 657, 861, 927
MbiI CCGCTC 1 cut(s) 797
MboI GATC 5 cut(s) 368, 532, 655, 859, 925
MboII GAAGA 7 cut(s) 74, 163, 233, 563, 624, 698, 950
MflI RGATCY 1 cut(s) 368
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 9 cut(s) 175, 331, 409, 664, 712, 729, 800, 880, 892
MmeI TCCRAC 1 cut(s) 934
MnlI CCTC 6 cut(s) 22, 35, 177, 194, 682, 805
MseI TTAA 3 cut(s) 195, 612, 732
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 590
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 53, 247, 292
NcoI CCATGG 1 cut(s) 94
NdeII GATC 5 cut(s) 368, 532, 655, 859, 925
NlaIII CATG 5 cut(s) 62, 98, 353, 439, 533
NmuCI GTSAC 2 cut(s) 761, 774
PagI TCATGA 3 cut(s) 58, 349, 529
PciSI GCTCTTC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 748
PkrI GCNGC 4 cut(s) 158, 475, 592, 822
PshBI ATTAAT 2 cut(s) 612, 732
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PstI CTGCAG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 590
RsaI GTAC 4 cut(s) 430, 466, 484, 567
RsaNI GTAC 4 cut(s) 429, 465, 483, 566
RseI CAYNNNNRTG 1 cut(s) 396
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 3 cut(s) 195, 612, 732
SatI GCNGC 4 cut(s) 157, 474, 591, 821
Sau3AI GATC 5 cut(s) 368, 532, 655, 859, 925
ScaI AGTACT 1 cut(s) 567
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 622
SfaNI GCATC 1 cut(s) 449
SfcI CTRYAG 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 9 cut(s) 175, 331, 409, 664, 712, 729, 800, 880, 892
SsiI CCGC 1 cut(s) 795
SspI AATATT 1 cut(s) 769
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 3 cut(s) 464, 565, 624
TaiI ACGT 1 cut(s) 776
TasI AATT 9 cut(s) 175, 331, 409, 664, 712, 729, 800, 880, 892
TatI WGTACW 1 cut(s) 565
TfiI GAWTC 1 cut(s) 748
Tru1I TTAA 3 cut(s) 195, 612, 732
Tru9I TTAA 3 cut(s) 195, 612, 732
TscAI CASTG 3 cut(s) 548, 553, 627
TseFI GTSAC 2 cut(s) 761, 774
TseI GCWGC 4 cut(s) 156, 473, 590, 820
Tsp45I GTSAC 2 cut(s) 761, 774
TspDTI ATGAA 7 cut(s) 75, 234, 321, 338, 484, 624, 804
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 3 cut(s) 548, 553, 627
VspI ATTAAT 2 cut(s) 612, 732
XapI RAATTY 5 cut(s) 331, 409, 664, 712, 880
ZrmI AGTACT 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.