pycom15g19290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011406
Physical Location & Seq
Reverse (-)
13724774 .. 13726663
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 729 bp
ATGGATTGGGGTTCGAATGGAGAAGAACCCACTTCGTGGGAAGAAAATTACAGTGTAAATTTGATTCCATCGGAGTTATTTTTCAAGTTCCGGAAAGAAGTGCAGGGTTTAAGGGTCGGCCTCAATCTGGAGTTCTATAATGCTCCAATCAATGAGTTTCAAGGAAAGATTGTTTTGAAGCCGTTAGCTCCTGAACGGATGTGGAAGTTCATCTACGAGCCTATCCATCAGGATGTTCGTGTTCTTTCGAAAAAGATTCCTCTAACTGGATTTCTAAATCTCCAGGTTGGCATCGGCCATAATTTTCAAATGAATGCAATTGGATGGAAATGGAAACTTACTACTTGTTTTGGTGGAGATGGTATATCTCGTACTCGGAATAAGACATCGGTTCGCGTGGTTCCTGGTTTGGATTTGCGCTTTGGGTGGAGGGCTGATTATGTACTTCCAGAAATCACGGGGGCTCTGGGTACTGGTGAACCATGGTTCAACATGAACTCGGGAAAGCTGCAAGCATCGCTAGATAGAGTTGAGACCATTGTAACCTATACTGATATCTACAGATTATACAAGCCTAAAGGCCAGCAGGATCAGCAGCAGAGAACTGAAACGGATGTAATTTCTTATTCAAGTCCTTTGGATCCCTTGAAGTCAAGCGACTTTTCGTCACACAATGACCGTTCTACATGGATCAATGAACCAGAGGATGCTGCAGATTTACACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

27.76

Weight (kDa)

6.12

Isoelectric Point (pI)

32.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7781 PF25003 12 - 182 5.9e-88 Domain of unknown function (DUF7781)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06010
fragaria_vesca FvH4_1g08630 FvH4_1g08630
malus_domestica MD02G1091100.v1.1 MD15G1217300.v1.1
prunus_persica Prupe.7G199200_v2.0.a1 Prupe.7G199200_v2.0.a1 Prupe.7G199200_v2.0.a1
pyrus_communis pycom02g07260 pycom15g19290
rosa_chinensis RchiOBHm_Chr2g0094901
rosa_laevigata RLG00000016529
rosa_multiflora Rmu_sc0033193.1_g000001
rosa_roxburghii Rroxscaffold_2G00146790
rosa_rugosa Rorug02G0048800
rosa_samantha Rh2AG095300 Rh2BG096300 Rh2CG098300 Rh2DG095000
rosa_wichuraiana Rw2G007170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 36
AccII CGCG 1 cut(s) 396
AccIII TCCGGA 1 cut(s) 90
AclWI GGATC 4 cut(s) 597, 635, 648, 698
AcoI YGGCCR 1 cut(s) 295
AcsI RAATTY 1 cut(s) 58
AdeI CACNNNGTG 1 cut(s) 36
AfaI GTAC 3 cut(s) 373, 444, 472
AfiI CCNNNNNNNGG 3 cut(s) 36, 127, 266
AgsI TTSAA 7 cut(s) 85, 161, 178, 308, 490, 630, 649
AhdI GACNNNNNGTC 1 cut(s) 664
AjnI CCWGG 2 cut(s) 282, 403
AluBI AGCT 2 cut(s) 188, 508
AluI AGCT 2 cut(s) 188, 508
Alw26I GTCTC 1 cut(s) 527
AlwI GGATC 4 cut(s) 597, 635, 648, 698
Ama87I CYCGRG 1 cut(s) 499
Aor13HI TCCGGA 1 cut(s) 90
AoxI GGCC 3 cut(s) 118, 295, 580
ApeKI GCWGC 3 cut(s) 508, 595, 710
ApoI RAATTY 1 cut(s) 58
AspLEI GCGC 1 cut(s) 420
AsuHPI GGTGA 1 cut(s) 488
AsuII TTCGAA 2 cut(s) 14, 248
AvaI CYCGRG 1 cut(s) 499
BamHI GGATCC 1 cut(s) 640
BanII GRGCYC 1 cut(s) 466
BarI GAAGNNNNNNTAC 2 cut(s) 197, 229
BbvI GCAGC 3 cut(s) 495, 607, 697
BccI CCATC 4 cut(s) 76, 234, 318, 353
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 2 cut(s) 284, 405
BcoDI GTCTC 1 cut(s) 527
BfaI CTAG 1 cut(s) 521
BfmI CTRYAG 2 cut(s) 559, 711
BisI GCNGC 3 cut(s) 509, 596, 711
BlsI GCNGC 3 cut(s) 510, 597, 712
Bme1390I CCNGG 2 cut(s) 284, 405
BmeRI GACNNNNNGTC 1 cut(s) 664
BmeT110I CYCGRG 1 cut(s) 499
BmiI GGNNCC 2 cut(s) 402, 642
BmrFI CCNGG 2 cut(s) 284, 405
BmsI GCATC 3 cut(s) 300, 524, 697
BpmI CTGGAG 2 cut(s) 149, 266
Bpu14I TTCGAA 2 cut(s) 14, 248
BsaI GGTCTC 1 cut(s) 527
BsaJI CCNNGG 1 cut(s) 482
BsaWI WCCGGW 1 cut(s) 90
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 127, 266
Bse1I ACTGG 2 cut(s) 271, 478
BseAI TCCGGA 1 cut(s) 90
BseBI CCWGG 2 cut(s) 284, 405
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 5 cut(s) 204, 238, 329, 619, 712
BseLI CCNNNNNNNGG 3 cut(s) 36, 127, 266
BseNI ACTGG 2 cut(s) 271, 478
BseXI GCAGC 3 cut(s) 495, 607, 697
BsgI GTGCAG 1 cut(s) 122
Bsh1236I CGCG 1 cut(s) 396
BshFI GGCC 3 cut(s) 120, 297, 582
BsiHKCI CYCGRG 1 cut(s) 499
BsiSI CCGG 1 cut(s) 91
BslI CCNNNNNNNGG 3 cut(s) 36, 127, 266
BsmAI GTCTC 1 cut(s) 527
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 3 cut(s) 120, 297, 582
Bso31I GGTCTC 1 cut(s) 527
BsoBI CYCGRG 1 cut(s) 499
Bsp119I TTCGAA 2 cut(s) 14, 248
Bsp1286I GDGCHC 1 cut(s) 466
Bsp13I TCCGGA 1 cut(s) 90
Bsp143I GATC 3 cut(s) 589, 640, 690
Bsp19I CCATGG 1 cut(s) 482
BspANI GGCC 3 cut(s) 120, 297, 582
BspEI TCCGGA 1 cut(s) 90
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 2 cut(s) 402, 642
BspMAI CTGCAG 1 cut(s) 715
BspPI GGATC 4 cut(s) 597, 635, 648, 698
BspT104I TTCGAA 2 cut(s) 14, 248
BspTNI GGTCTC 1 cut(s) 527
BsrI ACTGG 2 cut(s) 271, 478
BssECI CCNNGG 1 cut(s) 482
BssMI GATC 3 cut(s) 589, 640, 690
BssT1I CCWWGG 1 cut(s) 482
Bst2UI CCWGG 2 cut(s) 284, 405
Bst4CI ACNGT 2 cut(s) 53, 680
BstBI TTCGAA 2 cut(s) 14, 248
BstC8I GCNNGC 2 cut(s) 513, 584
BstDSI CCRYGG 1 cut(s) 482
BstF5I GGATG 5 cut(s) 204, 238, 329, 619, 712
BstFNI CGCG 1 cut(s) 396
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 3 cut(s) 592, 643, 693
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 3 cut(s) 589, 640, 690
BstMWI GCNNNNNNNGC 2 cut(s) 517, 592
BstNI CCWGG 2 cut(s) 284, 405
BstSCI CCNGG 2 cut(s) 282, 403
BstSFI CTRYAG 2 cut(s) 559, 711
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 3 cut(s) 495, 607, 697
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BsuRI GGCC 3 cut(s) 120, 297, 582
BtgI CCRYGG 1 cut(s) 482
BtgZI GCGATG 1 cut(s) 501
BtsCI GGATG 5 cut(s) 204, 238, 329, 619, 712
BtsIMutI CAGTG 1 cut(s) 58
Cac8I GCNNGC 2 cut(s) 513, 584
CfoI GCGC 1 cut(s) 420
Csp6I GTAC 3 cut(s) 372, 443, 471
CviAII CATG 3 cut(s) 483, 493, 687
CviQI GTAC 3 cut(s) 372, 443, 471
DpnI GATC 3 cut(s) 591, 642, 692
DpnII GATC 3 cut(s) 589, 640, 690
DraIII CACNNNGTG 1 cut(s) 36
DriI GACNNNNNGTC 1 cut(s) 664
EaeI YGGCCR 1 cut(s) 295
Eam1105I GACNNNNNGTC 1 cut(s) 664
Eco130I CCWWGG 1 cut(s) 482
Eco24I GRGCYC 1 cut(s) 466
Eco31I GGTCTC 1 cut(s) 527
Eco32I GATATC 1 cut(s) 556
Eco88I CYCGRG 1 cut(s) 499
EcoRII CCWGG 2 cut(s) 282, 403
EcoRV GATATC 1 cut(s) 556
EcoT14I CCWWGG 1 cut(s) 482
EcoT38I GRGCYC 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 3 cut(s) 486, 496, 690
FaiI YATR 9 cut(s) 138, 300, 365, 441, 484, 494, 549, 568, 688
FatI CATG 3 cut(s) 482, 492, 686
Fnu4HI GCNGC 3 cut(s) 509, 596, 711
FokI GGATG 5 cut(s) 211, 245, 336, 626, 719
FriOI GRGCYC 1 cut(s) 466
Fsp4HI GCNGC 3 cut(s) 509, 596, 711
FspBI CTAG 1 cut(s) 521
GlaI GCGC 1 cut(s) 419
GluI GCNGC 3 cut(s) 509, 596, 711
GsuI CTGGAG 2 cut(s) 149, 266
HaeIII GGCC 3 cut(s) 120, 297, 582
HapII CCGG 1 cut(s) 91
HhaI GCGC 1 cut(s) 420
Hin1II CATG 3 cut(s) 486, 496, 690
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HinfI GANTC 2 cut(s) 64, 256
HpaII CCGG 1 cut(s) 91
HphI GGTGA 1 cut(s) 488
Hpy166II GTNNAC 1 cut(s) 479
Hpy188I TCNGA 2 cut(s) 73, 378
Hpy188III TCNNGA 6 cut(s) 91, 128, 191, 230, 449, 501
Hpy8I GTNNAC 1 cut(s) 479
HpyCH4III ACNGT 2 cut(s) 53, 680
HpyCH4V TGCA 4 cut(s) 103, 317, 511, 713
HpyF10VI GCNNNNNNNGC 2 cut(s) 517, 592
Hsp92II CATG 3 cut(s) 486, 496, 690
HspAI GCGC 1 cut(s) 418
Kpn2I TCCGGA 1 cut(s) 90
Kzo9I GATC 3 cut(s) 589, 640, 690
LmnI GCTCC 2 cut(s) 148, 193
Lsp1109I GCAGC 3 cut(s) 495, 607, 697
LweI GCATC 3 cut(s) 300, 524, 697
MaeI CTAG 1 cut(s) 521
MaeIII GTNAC 2 cut(s) 541, 666
MalI GATC 3 cut(s) 591, 642, 692
MboI GATC 3 cut(s) 589, 640, 690
MboII GAAGA 2 cut(s) 35, 53
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 5 cut(s) 46, 58, 301, 318, 618
MnlI CCTC 4 cut(s) 131, 270, 423, 697
MroI TCCGGA 1 cut(s) 90
MseI TTAA 1 cut(s) 110
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 2 cut(s) 284, 405
MunI CAATTG 1 cut(s) 318
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 2 cut(s) 284, 405
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 2 cut(s) 517, 592
NcoI CCATGG 1 cut(s) 482
NdeII GATC 3 cut(s) 589, 640, 690
NlaIII CATG 3 cut(s) 486, 496, 690
NlaIV GGNNCC 2 cut(s) 402, 642
NmuCI GTSAC 1 cut(s) 666
NspV TTCGAA 2 cut(s) 14, 248
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 2 cut(s) 64, 256
PflMI CCANNNNNTGG 1 cut(s) 36
PkrI GCNGC 3 cut(s) 510, 597, 712
Psp6I CCWGG 2 cut(s) 282, 403
PspGI CCWGG 2 cut(s) 282, 403
PspN4I GGNNCC 2 cut(s) 402, 642
PstI CTGCAG 1 cut(s) 715
PsuI RGATCY 1 cut(s) 640
RsaI GTAC 3 cut(s) 373, 444, 472
RsaNI GTAC 3 cut(s) 372, 443, 471
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 3 cut(s) 509, 596, 711
Sau3AI GATC 3 cut(s) 589, 640, 690
ScrFI CCNGG 2 cut(s) 284, 405
SduI GDGCHC 1 cut(s) 466
SetI ASST 4 cut(s) 190, 288, 510, 548
SfaNI GCATC 3 cut(s) 300, 524, 697
SfcI CTRYAG 2 cut(s) 559, 711
SfuI TTCGAA 2 cut(s) 14, 248
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 5 cut(s) 46, 58, 301, 318, 618
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 2 cut(s) 282, 403
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 2 cut(s) 53, 680
TaqI TCGA 2 cut(s) 14, 248
TasI AATT 5 cut(s) 46, 58, 301, 318, 618
TatI WGTACW 1 cut(s) 442
TfiI GAWTC 2 cut(s) 64, 256
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 666
TseI GCWGC 3 cut(s) 508, 595, 710
Tsp45I GTSAC 1 cut(s) 666
TspDTI ATGAA 4 cut(s) 199, 326, 509, 711
TspGWI ACGGA 2 cut(s) 211, 626
TspRI CASTG 1 cut(s) 58
Van91I CCANNNNNTGG 1 cut(s) 36
XapI RAATTY 1 cut(s) 58
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.