Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012171

Physical Location & Seq

Genomic Coordinates Reverse (-)

14011814 .. 14015232

Gene Structure 3419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGGTGGCCGCCAAGAGAAAACCGACAGAAACAGAGGAATCCGATATCTTCGCGCCTTGCTCTTTCTCCAGTCTCGGACTTCACACAACATTATGCGAACAACTCGAAGAGAGTTTGGGCTTCAAAGCTCCGACTCTGGTTCAAGCTCAAGCCATCCCGGTCGTCCTCTCCGGCAGCCACGTGCTTGTCAATGCGGCTACCGGCACTGGCAAAACGGTGGCGTATTTGGCTCCGGTCATCCATCACCTGCACTTGTACCAGCCTCGGATTCAGCGCTCCGACGGAACTTTCGCGCTGGTTCTTGTGCCCACCAGGGAGTTGTGTCTGCAGGTTCATGAGATTCTGCACAAGGTCCTGCACAGGTTCCATTGGATTGTTCCAGGTTATGTAATGGGCGGTGAAAACAGGTCCAAGGAGAAGGCCCGGCTGCGAAAAGGCATATCTATTCTTGTTGCAACTCCTGGACGGCTCTTGGATCACCTGAAGAATACGTCTTCTTTTGTGCACACGAATTTACGTTGGATTATCTTCGATGAAGCAGATAGAATTTTGGAATTGGGATTTGGAAAAGAAATAGAGGAAATTCTAGATTTTTTGGGCTCAAGGCAACATGGCTCTGCCTCTAAGAATGGCGCTGTGACGAGTAAATTTGAGTTTCCGAGACAGAATTTGCTATTATCAGCGACCTTAAACGAGAAAGTCAACCATCTTGCAAAAATGAGTTTAGAGAAACCCGTTATGATTGGCATGCCTGAGAAGAAGAGGCAGTCTATTGCATTGCATGAACATTTAGGATCTGACACAGATGATGATGACACACAAACAGTGAAGGCAACAGGCTCTGTTAGTGAAGATTATAGACTTCCAGCTCAATTGACACAGAAATATGTAAAGGTACCATGTAATGCACGGCTTGCTGTACTTCTTTCCATTCTAAAGTATCTTTTTGAGCGAGAAAGTTCCGAAAAGATTGTGCTATTCTTTTCAACATGTGATGCAGTGGATTTTCACTACTCCTTGTTAAGTGAGTTCCAATTCAAACCTTCTTCAGGACCAGGTGCAGAACTTAAGCAGAGGTTTGTTAATTGTAAGACCTTCCGGTTACATGGGAATATGGAGCAGGAGGACCGAAGATCTGCATTTGAGACCTTCAAAAGAGAAAAATCGGCTCTTCTTTTGTCCACAGATGTTTGTGCTAGAGGTTTGGATTTCCCGAAAGTAAAATGTATTATACAATATGATTCTCCAGGTGAGGCTACTGAATATGTTCATAGGGTTGGAAGAACCGCTCGGCTGGGTGAAAGAGGGGATTCATTGTTGTTTTTACAGCCAATTGAAATGGATTATTTGAAAGAGTTGGAGAAACATGGTGTTTCTCTAGCAGAGTTTCCCCTCCTCAAAATATTAGATAGTTTTCCACTATACGGTCATAAGCATGTCAGGAAGTTTGTTTCCATTGACGCACATCCCTGGGTGATGTCTGTGCAAAAGGCACTTGAAGCATTTACAGATAAGCCGGATATGAAGACACTAGCCAAGAATGCATTTTGCTCGTGGGTTCGCGCATACACTGCCCACCGCGGTGAACTGAAAAGAATTTTTATGGTAAAGAAACTTCACTTGGGACATGTTGCGAAAAGCTTTGCATTGAAAGACCAGCCTTCCTTGGTTGGTAAGTCATTCCACAATCAAGAAAAGAAAAGGAAGAGGGGTGAAAAGCAAAAGGGATTATCAAGAAAGAGGAAGGTTTCGAGAAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

588

Amino Acids

66.37

Weight (kDa)

9.46

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	46 - 235	1.5e-40	DEAD/DEAH box helicase
ResIII	PF04851	58 - 196	2.3e-09	Type III restriction enzyme, res subunit
Helicase_C	PF00271	310 - 433	2.7e-24	Helicase conserved C-terminal domain
CTE_SPB4	PF13959	506 - 555	1e-18	ATP-dependent rRNA helicase SPB4-like, C-terminal extension

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40700
fragaria_vesca	FvH4_1g09140 FvH4_1g09140 FvH4_1g09140
malus_domestica	MD02G1096800.v1.1
prunus_persica	Prupe.7G194100_v2.0.a1
pyrus_communis	pycom02g07680 pycom15g19610
rosa_chinensis	RchiOBHm_Chr2g0095531
rosa_laevigata	RLG00000016576
rosa_multiflora	Rmu_co8308315.1_g000001 Rmu_co8333539.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146220
rosa_rugosa	Rorug02G0052200
rosa_samantha	Rh2AG100000 Rh2BG101400 Rh2CG103600 Rh2DG100900
rosa_wichuraiana	Rw2G007590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	2 cut(s)	255, 319
Acc65I	GGTACC	1 cut(s)	895
AccB1I	GGYRCC	1 cut(s)	895
AccBSI	CCGCTC	1 cut(s)	1289
AccII	CGCG	4 cut(s)	53, 293, 1563, 1581
AciI	CCGC	6 cut(s)	9, 194, 396, 1287, 1579, 1581
AclWI	GGATC	2 cut(s)	483, 802
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	6 cut(s)	511, 546, 582, 647, 667, 1596
AcuI	CTGAAG	2 cut(s)	503, 1032
AcvI	CACGTG	1 cut(s)	181
AfaI	GTAC	3 cut(s)	257, 897, 921
AfeI	AGCGCT	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	1049, 1424
AflII	CTTAAG	1 cut(s)	1067
AflIII	ACRYGT	2 cut(s)	989, 1627
AgsI	TTSAA	9 cut(s)	124, 143, 987, 1039, 1153, 1337, 1351, 1499, 1651
AjnI	CCWGG	6 cut(s)	311, 379, 460, 1054, 1246, 1469
AjuI	GAANNNNNNNTTGG	4 cut(s)	546, 578, 1604, 1636
AleI	CACNNNNGTG	1 cut(s)	1581
AluBI	AGCT	4 cut(s)	128, 146, 869, 1641
AluI	AGCT	4 cut(s)	128, 146, 869, 1641
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	3 cut(s)	77, 655, 1139
Alw44I	GTGCAC	1 cut(s)	503
AlwI	GGATC	2 cut(s)	483, 802
AlwNI	CAGNNNCTG	1 cut(s)	842
Aor51HI	AGCGCT	1 cut(s)	275
AoxI	GGCC	2 cut(s)	6, 420
ApaLI	GTGCAC	1 cut(s)	503
ApeKI	GCWGC	2 cut(s)	174, 427
ApoI	RAATTY	6 cut(s)	511, 546, 582, 647, 667, 1596
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
Asp700I	GAANNNNTTC	1 cut(s)	1266
Asp718I	GGTACC	1 cut(s)	895
AspLEI	GCGC	5 cut(s)	55, 276, 295, 635, 1565
AspS9I	GGNCC	5 cut(s)	352, 408, 421, 1052, 1126
AsuC2I	CCSGG	2 cut(s)	158, 424
AsuHPI	GGTGA	8 cut(s)	236, 410, 470, 1262, 1310, 1486, 1595, 1724
AvaII	GGWCC	4 cut(s)	352, 408, 1052, 1126
BaeGI	GKGCMC	2 cut(s)	309, 507
BanI	GGYRCC	1 cut(s)	895
BanII	GRGCYC	1 cut(s)	602
BarI	GAAGNNNNNNTAC	2 cut(s)	1599, 1631
BauI	CACGAG	1 cut(s)	1552
BbrPI	CACGTG	1 cut(s)	181
BbsI	GAAGAC	2 cut(s)	486, 1532
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	2 cut(s)	186, 414
BccI	CCATC	3 cut(s)	161, 249, 714
BceAI	ACGGC	2 cut(s)	482, 926
BcgI	CGANNNNNNTGC	2 cut(s)	1533, 1567
BciT130I	CCWGG	6 cut(s)	313, 381, 462, 1056, 1248, 1471
BcnI	CCSGG	2 cut(s)	158, 424
BcoDI	GTCTC	3 cut(s)	77, 655, 1139
BfaI	CTAG	4 cut(s)	587, 1197, 1379, 1532
BfmI	CTRYAG	1 cut(s)	326
BfoI	RGCGCY	2 cut(s)	277, 636
BfrI	CTTAAG	1 cut(s)	1067
BfuAI	ACCTGC	2 cut(s)	255, 319
BglII	AGATCT	1 cut(s)	1133
BisI	GCNGC	4 cut(s)	9, 175, 195, 428
BlsI	GCNGC	4 cut(s)	10, 176, 196, 429
Bme1390I	CCNGG	8 cut(s)	158, 313, 381, 424, 462, 1056, 1248, 1471
Bme18I	GGWCC	4 cut(s)	352, 408, 1052, 1126
BmgT120I	GGNCC	5 cut(s)	352, 408, 421, 1052, 1126
BmiI	GGNNCC	3 cut(s)	231, 365, 897
BmrFI	CCNGG	8 cut(s)	158, 313, 381, 424, 462, 1056, 1248, 1471
BmsI	GCATC	1 cut(s)	985
BpiI	GAAGAC	2 cut(s)	486, 1532
BpmI	CTGGAG	2 cut(s)	52, 1230
BpuEI	CTTGAG	2 cut(s)	132, 586
BpuMI	CCSGG	2 cut(s)	158, 424
BsaAI	YACGTR	1 cut(s)	181
BsaI	GGTCTC	1 cut(s)	1139
BsaJI	CCNNGG	7 cut(s)	263, 312, 411, 1469, 1470, 1579, 1665
BsaWI	WCCGGW	2 cut(s)	232, 1098
Bsc4I	CCNNNNNNNGG	2 cut(s)	1049, 1424
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	69, 211
Bse3DI	GCAATG	1 cut(s)	776
BseBI	CCWGG	6 cut(s)	313, 381, 462, 1056, 1248, 1471
BseDI	CCNNGG	7 cut(s)	263, 312, 411, 1469, 1470, 1579, 1665
BseGI	GGATG	3 cut(s)	153, 237, 1465
BseLI	CCNNNNNNNGG	2 cut(s)	1049, 1424
BseMI	GCAATG	1 cut(s)	776
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	2 cut(s)	69, 211
BseRI	GAGGAG	1 cut(s)	1385
BseSI	GKGCMC	2 cut(s)	309, 507
BseXI	GCAGC	2 cut(s)	186, 414
BseYI	CCCAGC	1 cut(s)	1294
BsgI	GTGCAG	4 cut(s)	233, 329, 341, 1080
Bsh1236I	CGCG	4 cut(s)	53, 293, 1563, 1581
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	8, 422
BshNI	GGYRCC	1 cut(s)	895
BsiEI	CGRYCG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	507
BsiSI	CCGG	7 cut(s)	158, 171, 201, 233, 424, 1099, 1517
BslFI	GGGAC	1 cut(s)	1638
BslI	CCNNNNNNNGG	2 cut(s)	1049, 1424
BsmAI	GTCTC	3 cut(s)	77, 655, 1139
BsmFI	GGGAC	1 cut(s)	1638
BsmI	GAATGC	1 cut(s)	1546
BsnI	GGCC	2 cut(s)	8, 422
Bso31I	GGTCTC	1 cut(s)	1139
Bsp1286I	GDGCHC	3 cut(s)	309, 507, 602
Bsp143I	GATC	3 cut(s)	475, 794, 1133
BspACI	CCGC	6 cut(s)	9, 194, 396, 1287, 1579, 1581
BspANI	GGCC	2 cut(s)	8, 422
BspCNI	CTCAG	1 cut(s)	745
BspFNI	CGCG	4 cut(s)	53, 293, 1563, 1581
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	3 cut(s)	231, 365, 897
BspMAI	CTGCAG	1 cut(s)	330
BspMI	ACCTGC	2 cut(s)	255, 319
BspPI	GGATC	2 cut(s)	483, 802
BspQI	GCTCTTC	1 cut(s)	1176
BspT107I	GGYRCC	1 cut(s)	895
BspTI	CTTAAG	1 cut(s)	1067
BspTNI	GGTCTC	1 cut(s)	1139
BsrBI	CCGCTC	1 cut(s)	1289
BsrDI	GCAATG	1 cut(s)	776
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	69, 211
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	7 cut(s)	263, 312, 411, 1469, 1470, 1579, 1665
BssMI	GATC	3 cut(s)	475, 794, 1133
BssSI	CACGAG	1 cut(s)	1552
BssT1I	CCWWGG	2 cut(s)	411, 1665
Bst2BI	CACGAG	1 cut(s)	1552
Bst2UI	CCWGG	6 cut(s)	313, 381, 462, 1056, 1248, 1471
Bst4CI	ACNGT	3 cut(s)	217, 826, 1427
Bst6I	CTCTTC	4 cut(s)	102, 755, 1176, 1700
BstAFI	CTTAAG	1 cut(s)	1067
BstAPI	GCANNNNNTGC	2 cut(s)	914, 1571
BstBAI	YACGTR	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	749, 915
BstDEI	CTNAG	2 cut(s)	624, 753
BstDSI	CCRYGG	1 cut(s)	1579
BstENI	CCTNNNNNAGG	1 cut(s)	1047
BstF5I	GGATG	3 cut(s)	153, 237, 1465
BstFNI	CGCG	4 cut(s)	53, 293, 1563, 1581
BstH2I	RGCGCY	2 cut(s)	277, 636
BstHHI	GCGC	5 cut(s)	55, 276, 295, 635, 1565
BstKTI	GATC	3 cut(s)	478, 797, 1136
BstMAI	GTCTC	3 cut(s)	77, 655, 1139
BstMBI	GATC	3 cut(s)	475, 794, 1133
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	5 cut(s)	227, 914, 1499, 1541, 1571
BstNI	CCWGG	6 cut(s)	313, 381, 462, 1056, 1248, 1471
BstNSI	RCATGY	4 cut(s)	751, 993, 1439, 1631
BstSCI	CCNGG	8 cut(s)	156, 311, 379, 422, 460, 1054, 1246, 1469
BstSFI	CTRYAG	1 cut(s)	326
BstSLI	GKGCMC	2 cut(s)	309, 507
BstUI	CGCG	4 cut(s)	53, 293, 1563, 1581
BstV1I	GCAGC	2 cut(s)	186, 414
BstV2I	GAAGAC	2 cut(s)	486, 1532
BstX2I	RGATCY	2 cut(s)	794, 1133
BstYI	RGATCY	2 cut(s)	794, 1133
BsuRI	GGCC	2 cut(s)	8, 422
BtgI	CCRYGG	1 cut(s)	1579
BtsCI	GGATG	3 cut(s)	153, 237, 1465
BtsI	GCAGTG	2 cut(s)	1005, 1569
BtsIMutI	CAGTG	4 cut(s)	204, 831, 1005, 1569
BveI	ACCTGC	2 cut(s)	255, 319
Cac8I	GCNNGC	2 cut(s)	749, 915
CaiI	CAGNNNCTG	1 cut(s)	842
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	5 cut(s)	55, 276, 295, 635, 1565
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	5 cut(s)	352, 408, 421, 1052, 1126
Cfr42I	CCGCGG	1 cut(s)	1582
CseI	GACGC	1 cut(s)	1469
CsiI	ACCWGGT	1 cut(s)	1054
Csp6I	GTAC	3 cut(s)	256, 896, 920
CviQI	GTAC	3 cut(s)	256, 896, 920
DdeI	CTNAG	2 cut(s)	624, 753
DpnI	GATC	3 cut(s)	477, 796, 1135
DpnII	GATC	3 cut(s)	475, 794, 1133
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	4 cut(s)	102, 755, 1176, 1700
EarI	CTCTTC	4 cut(s)	102, 755, 1176, 1700
Eco130I	CCWWGG	2 cut(s)	411, 1665
Eco24I	GRGCYC	1 cut(s)	602
Eco31I	GGTCTC	1 cut(s)	1139
Eco32I	GATATC	1 cut(s)	46
Eco47I	GGWCC	4 cut(s)	352, 408, 1052, 1126
Eco47III	AGCGCT	1 cut(s)	275
Eco57I	CTGAAG	2 cut(s)	503, 1032
Eco72I	CACGTG	1 cut(s)	181
EcoNI	CCTNNNNNAGG	1 cut(s)	1047
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRII	CCWGG	6 cut(s)	311, 379, 460, 1054, 1246, 1469
EcoRV	GATATC	1 cut(s)	46
EcoT14I	CCWWGG	2 cut(s)	411, 1665
EcoT22I	ATGCAT	1 cut(s)	1546
EcoT38I	GRGCYC	1 cut(s)	602
ErhI	CCWWGG	2 cut(s)	411, 1665
FaqI	GGGAC	1 cut(s)	1638
Fnu4HI	GCNGC	4 cut(s)	9, 175, 195, 428
FokI	GGATG	3 cut(s)	140, 224, 1452
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	4 cut(s)	9, 175, 195, 428
FspBI	CTAG	4 cut(s)	587, 1197, 1379, 1532
GlaI	GCGC	5 cut(s)	54, 275, 294, 634, 1564
GluI	GCNGC	4 cut(s)	9, 175, 195, 428
GsaI	CCCAGC	1 cut(s)	1298
GsuI	CTGGAG	2 cut(s)	52, 1230
HaeII	RGCGCY	2 cut(s)	277, 636
HaeIII	GGCC	2 cut(s)	8, 422
HapII	CCGG	7 cut(s)	158, 171, 201, 233, 424, 1099, 1517
HgaI	GACGC	1 cut(s)	1469
HhaI	GCGC	5 cut(s)	55, 276, 295, 635, 1565
Hin6I	GCGC	5 cut(s)	53, 274, 293, 633, 1563
HinP1I	GCGC	5 cut(s)	53, 274, 293, 633, 1563
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	1639
HinfI	GANTC	6 cut(s)	38, 133, 268, 340, 1241, 1310
HpaII	CCGG	7 cut(s)	158, 171, 201, 233, 424, 1099, 1517
HphI	GGTGA	8 cut(s)	236, 410, 470, 1262, 1310, 1486, 1595, 1724
Hpy166II	GTNNAC	4 cut(s)	505, 703, 1182, 1586
Hpy188I	TCNGA	8 cut(s)	43, 77, 132, 267, 280, 660, 799, 964
Hpy188III	TCNNGA	8 cut(s)	335, 587, 1050, 1213, 1441, 1691, 1734, 1752
Hpy8I	GTNNAC	4 cut(s)	505, 703, 1182, 1586
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	7 cut(s)	412, 823, 1053, 1105, 1159, 1671, 1738
HpyCH4III	ACNGT	3 cut(s)	217, 826, 1427
HpyCH4IV	ACGT	3 cut(s)	180, 491, 517
HpyF10VI	GCNNNNNNNGC	5 cut(s)	227, 914, 1499, 1541, 1571
HpyF3I	CTNAG	2 cut(s)	624, 753
HpySE526I	ACGT	3 cut(s)	180, 491, 517
HspAI	GCGC	5 cut(s)	53, 274, 293, 633, 1563
KpnI	GGTACC	1 cut(s)	899
KspI	CCGCGG	1 cut(s)	1582
Kzo9I	GATC	3 cut(s)	475, 794, 1133
LguI	GCTCTTC	1 cut(s)	1176
LmnI	GCTCC	4 cut(s)	133, 235, 281, 1117
Lsp1109I	GCAGC	2 cut(s)	186, 414
LweI	GCATC	1 cut(s)	985
MabI	ACCWGGT	1 cut(s)	1054
MaeI	CTAG	4 cut(s)	587, 1197, 1379, 1532
MaeII	ACGT	3 cut(s)	180, 491, 517
MaeIII	GTNAC	2 cut(s)	637, 1101
MalI	GATC	3 cut(s)	477, 796, 1135
MbiI	CCGCTC	1 cut(s)	1289
MboI	GATC	3 cut(s)	475, 794, 1133
MfeI	CAATTG	2 cut(s)	872, 1332
MflI	RGATCY	2 cut(s)	794, 1133
MhlI	GDGCHC	3 cut(s)	309, 507, 602
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	5 cut(s)	155, 303, 500, 1258, 1338
Mph1103I	ATGCAT	1 cut(s)	1546
MroXI	GAANNNNTTC	1 cut(s)	1266
MseI	TTAA	4 cut(s)	689, 1022, 1068, 1083
MslI	CAYNNNNRTG	2 cut(s)	1434, 1581
MspA1I	CMGCKG	1 cut(s)	1581
MspCI	CTTAAG	1 cut(s)	1067
MspI	CCGG	7 cut(s)	158, 171, 201, 233, 424, 1099, 1517
MspR9I	CCNGG	8 cut(s)	158, 313, 381, 424, 462, 1056, 1248, 1471
MunI	CAATTG	2 cut(s)	872, 1332
Mva1269I	GAATGC	1 cut(s)	1546
MvaI	CCWGG	6 cut(s)	313, 381, 462, 1056, 1248, 1471
MvnI	CGCG	4 cut(s)	53, 293, 1563, 1581
MwoI	GCNNNNNNNGC	5 cut(s)	227, 914, 1499, 1541, 1571
NciI	CCSGG	2 cut(s)	158, 424
NdeII	GATC	3 cut(s)	475, 794, 1133
NlaIV	GGNNCC	3 cut(s)	231, 365, 897
NmeAIII	GCCGAG	1 cut(s)	1270
NmuCI	GTSAC	1 cut(s)	637
NsiI	ATGCAT	1 cut(s)	1546
NspI	RCATGY	4 cut(s)	751, 993, 1439, 1631
OliI	CACNNNNGTG	1 cut(s)	1581
PaeI	GCATGC	1 cut(s)	751
PagI	TCATGA	1 cut(s)	334
PaqCI	CACCTGC	1 cut(s)	255
PasI	CCCWGGG	1 cut(s)	1470
PciI	ACATGT	2 cut(s)	989, 1627
PciSI	GCTCTTC	1 cut(s)	1176
PctI	GAATGC	1 cut(s)	1546
PdmI	GAANNNNTTC	1 cut(s)	1266
PfeI	GAWTC	5 cut(s)	38, 268, 340, 1241, 1310
PfoI	TCCNGGA	1 cut(s)	460
PkrI	GCNGC	4 cut(s)	10, 176, 196, 429
PleI	GAGTC	1 cut(s)	127
PmaCI	CACGTG	1 cut(s)	181
PmlI	CACGTG	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	127
Ppu21I	YACGTR	1 cut(s)	181
PpuMI	RGGWCCY	1 cut(s)	352
PscI	ACATGT	2 cut(s)	989, 1627
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	6 cut(s)	311, 379, 460, 1054, 1246, 1469
PspCI	CACGTG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	1294
PspGI	CCWGG	6 cut(s)	311, 379, 460, 1054, 1246, 1469
PspN4I	GGNNCC	3 cut(s)	231, 365, 897
PspPI	GGNCC	5 cut(s)	352, 408, 421, 1052, 1126
PspPPI	RGGWCCY	1 cut(s)	352
PstI	CTGCAG	1 cut(s)	330
PstNI	CAGNNNCTG	1 cut(s)	842
PsuI	RGATCY	2 cut(s)	794, 1133
RsaI	GTAC	3 cut(s)	257, 897, 921
RsaNI	GTAC	3 cut(s)	256, 896, 920
RseI	CAYNNNNRTG	2 cut(s)	1434, 1581
SacII	CCGCGG	1 cut(s)	1582
SapI	GCTCTTC	1 cut(s)	1176
SaqAI	TTAA	4 cut(s)	689, 1022, 1068, 1083
SatI	GCNGC	4 cut(s)	9, 175, 195, 428
Sau3AI	GATC	3 cut(s)	475, 794, 1133
Sau96I	GGNCC	5 cut(s)	352, 408, 421, 1052, 1126
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	8 cut(s)	158, 313, 381, 424, 462, 1056, 1248, 1471
SduI	GDGCHC	3 cut(s)	309, 507, 602
SexAI	ACCWGGT	1 cut(s)	1054
SfaNI	GCATC	1 cut(s)	985
SfcI	CTRYAG	1 cut(s)	326
Sfr303I	CCGCGG	1 cut(s)	1582
SgrBI	CCGCGG	1 cut(s)	1582
SinI	GGWCC	4 cut(s)	352, 408, 1052, 1126
SmiMI	CAYNNNNRTG	2 cut(s)	1434, 1581
SmlI	CTYRAG	3 cut(s)	147, 601, 1067
SmoI	CTYRAG	3 cut(s)	147, 601, 1067
SphI	GCATGC	1 cut(s)	751
SsiI	CCGC	6 cut(s)	9, 194, 396, 1287, 1579, 1581
SspI	AATATT	1 cut(s)	1404
SspMI	CTAG	4 cut(s)	587, 1197, 1379, 1532
StyD4I	CCNGG	8 cut(s)	156, 311, 379, 422, 460, 1054, 1246, 1469
StyI	CCWWGG	2 cut(s)	411, 1665
TaaI	ACNGT	3 cut(s)	217, 826, 1427
TaiI	ACGT	3 cut(s)	183, 494, 520
TaqI	TCGA	3 cut(s)	105, 531, 1751
TaqII	GACCGA	1 cut(s)	1143
TatI	WGTACW	1 cut(s)	919
TauI	GCSGC	2 cut(s)	11, 197
TfiI	GAWTC	5 cut(s)	38, 268, 340, 1241, 1310
Tru1I	TTAA	4 cut(s)	689, 1022, 1068, 1083
Tru9I	TTAA	4 cut(s)	689, 1022, 1068, 1083
TscAI	CASTG	4 cut(s)	211, 831, 1005, 1576
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	2 cut(s)	174, 427
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	6 cut(s)	323, 549, 798, 1259, 1302, 1538
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	4 cut(s)	211, 831, 1005, 1576
Vha464I	CTTAAG	1 cut(s)	1067
VneI	GTGCAC	1 cut(s)	503
VpaK11BI	GGWCC	4 cut(s)	352, 408, 1052, 1126
XagI	CCTNNNNNAGG	1 cut(s)	1047
XapI	RAATTY	6 cut(s)	511, 546, 582, 647, 667, 1596
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	4 cut(s)	751, 993, 1439, 1631
XmnI	GAANNNNTTC	1 cut(s)	1266
XspI	CTAG	4 cut(s)	587, 1197, 1379, 1532
Zsp2I	ATGCAT	1 cut(s)	1546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.