pycom15g19720

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011852
Physical Location & Seq
Reverse (-)
14146872 .. 14147234
363 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
ATGGCCAAAGGTGGGAAGCTAACAAAGCTCAAGTCAGTACTGAAGAAGTGGAACTCCTTCAGCAAGCAGAACAGCCGCCGCAGCCTCAATTCTGTTGTCTCCGCCGCCGATGACGATTACTTCACGGACGTAATCTCAGGAGACCTACGCCCTGTCTACGTGGGTAAGTCCCGAAGACGTTATCTTGTGGCCTCCAACATCGTAGACCACCCGCTTTTCAAGGAGCTGGCCGACAGGTCAGACGACGACACGATCGACTTCGCATGCGAGGTCGTGCTGTTCGAGCACTTGTTGTGGATGCTCGACAATGCCGATCCACAGCCCGAGTCCTTGAACGAGTTAGTTGAGTTCTATGCCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

121

Amino Acids

13.68

Weight (kDa)

5.32

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 9 - 101 9.2e-16 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20820
fragaria_vesca FvH4_1g09300
malus_domestica MD02G1100200.v1.1 MD07G1220700.v1.1 MD15G1223100.v1.1
prunus_persica Prupe.7G192600_v2.0.a1
pyrus_communis pycom02g07820 pycom15g19720
rosa_chinensis RchiOBHm_Chr2g0095881
rosa_laevigata RLG00000016601
rosa_multiflora Rmu_sc0024045.1_g000001 Rmu_sc0034047.1_g000001
rosa_roxburghii Rroxscaffold_2G00146010
rosa_rugosa Rorug02G0053400
rosa_samantha Rh2AG102500 Rh2BG104000 Rh2CG106500 Rh2DG104200
rosa_wichuraiana Rw2G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 156, 204
AciI CCGC 5 cut(s) 76, 79, 102, 105, 212
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 2 cut(s) 3, 228
AcuI CTGAAG 2 cut(s) 43, 62
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 2 cut(s) 220, 334
AluBI AGCT 3 cut(s) 19, 28, 226
AluI AGCT 3 cut(s) 19, 28, 226
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 2 cut(s) 103, 135
AlwI GGATC 1 cut(s) 308
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 3 cut(s) 3, 189, 228
ApeKI GCWGC 1 cut(s) 81
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
Asp700I GAANNNNTTC 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 323
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 93
BcoDI GTCTC 2 cut(s) 103, 135
BisI GCNGC 4 cut(s) 76, 79, 82, 105
BlsI GCNGC 4 cut(s) 77, 80, 83, 106
BmcAI AGTACT 1 cut(s) 39
BmeT110I CYCGRG 1 cut(s) 323
BmsI GCATC 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 93
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 3 cut(s) 5, 191, 230
BsiEI CGRYCG 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 288
BsiHKCI CYCGRG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 2 cut(s) 103, 135
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 3 cut(s) 5, 191, 230
Bso31I GGTCTC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 2 cut(s) 252, 313
BspACI CCGC 5 cut(s) 76, 79, 102, 105, 212
BspANI GGCC 3 cut(s) 5, 191, 230
BspCNI CTCAG 1 cut(s) 149
BspPI GGATC 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 135
BssMI GATC 2 cut(s) 252, 313
BstBAI YACGTR 1 cut(s) 160
BstC8I GCNNGC 4 cut(s) 65, 228, 265, 358
BstDEI CTNAG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 303
BstKTI GATC 2 cut(s) 255, 316
BstMAI GTCTC 2 cut(s) 103, 135
BstMBI GATC 2 cut(s) 252, 313
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 3 cut(s) 25, 81, 283
BstNSI RCATGY 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 181
BsuRI GGCC 3 cut(s) 5, 191, 230
BtsCI GGATG 1 cut(s) 303
Cac8I GCNNGC 4 cut(s) 65, 228, 265, 358
Csp6I GTAC 1 cut(s) 38
CviAII CATG 1 cut(s) 264
CviJI RGCY 9 cut(s) 5, 19, 28, 75, 84, 191, 226, 230, 322
CviKI_1 RGCY 9 cut(s) 5, 19, 28, 75, 84, 191, 226, 230, 322
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 1 cut(s) 136
DpnI GATC 2 cut(s) 254, 315
DpnII GATC 2 cut(s) 252, 313
EaeI YGGCCR 2 cut(s) 3, 228
EciI GGCGGA 1 cut(s) 91
Eco31I GGTCTC 1 cut(s) 135
Eco57I CTGAAG 2 cut(s) 43, 62
Eco88I CYCGRG 1 cut(s) 323
FaeI CATG 1 cut(s) 267
FaiI YATR 2 cut(s) 265, 354
FaqI GGGAC 1 cut(s) 154
FatI CATG 1 cut(s) 263
FauI CCCGC 1 cut(s) 219
FblI GTMKAC 2 cut(s) 156, 204
Fnu4HI GCNGC 4 cut(s) 76, 79, 82, 105
FokI GGATG 1 cut(s) 310
Fsp4HI GCNGC 4 cut(s) 76, 79, 82, 105
GluI GCNGC 4 cut(s) 76, 79, 82, 105
HaeIII GGCC 3 cut(s) 5, 191, 230
Hin1II CATG 1 cut(s) 267
HinfI GANTC 1 cut(s) 326
Hpy166II GTNNAC 2 cut(s) 157, 205
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 2 cut(s) 138, 171
Hpy8I GTNNAC 2 cut(s) 157, 205
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 67
HpyCH4IV ACGT 3 cut(s) 129, 159, 178
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 81, 283
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 3 cut(s) 129, 159, 178
Hsp92II CATG 1 cut(s) 267
Kzo9I GATC 2 cut(s) 252, 313
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 4 cut(s) 123, 165, 212, 220
Lsp1109I GCAGC 1 cut(s) 93
LweI GCATC 1 cut(s) 288
MaeII ACGT 3 cut(s) 129, 159, 178
MalI GATC 2 cut(s) 254, 315
MboI GATC 2 cut(s) 252, 313
MboII GAAGA 2 cut(s) 55, 186
MhlI GDGCHC 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 88
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 3 cut(s) 95, 202, 262
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 56
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 3 cut(s) 25, 81, 283
NdeII GATC 2 cut(s) 252, 313
NlaIII CATG 1 cut(s) 267
NspI RCATGY 1 cut(s) 267
PaeI GCATGC 1 cut(s) 267
PcsI WCGNNNNNNNCGW 3 cut(s) 252, 279, 309
PdmI GAANNNNTTC 1 cut(s) 56
PkrI GCNGC 4 cut(s) 77, 80, 83, 106
Ple19I CGATCG 1 cut(s) 255
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Ppu21I YACGTR 1 cut(s) 160
PvuI CGATCG 1 cut(s) 255
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SatI GCNGC 4 cut(s) 76, 79, 82, 105
Sau3AI GATC 2 cut(s) 252, 313
ScaI AGTACT 1 cut(s) 39
SchI GAGTC 1 cut(s) 335
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SphI GCATGC 1 cut(s) 267
Sse9I AATT 1 cut(s) 88
SsiI CCGC 5 cut(s) 76, 79, 102, 105, 212
TaiI ACGT 3 cut(s) 132, 162, 181
TaqI TCGA 3 cut(s) 255, 282, 303
TasI AATT 1 cut(s) 88
TatI WGTACW 1 cut(s) 37
TauI GCSGC 3 cut(s) 78, 81, 107
TseI GCWGC 1 cut(s) 81
TspGWI ACGGA 1 cut(s) 140
XceI RCATGY 1 cut(s) 267
XmiI GTMKAC 2 cut(s) 156, 204
XmnI GAANNNNTTC 1 cut(s) 56
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.