Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007956

Physical Location & Seq

Genomic Coordinates Reverse (-)

14339955 .. 14346009

Gene Structure 6055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAGCCTCCGTCGTTCCAAGAAGCTCCGCGCTGCGACGTCTGCAAATGCAGCTTTAACGCTTTCAGGCGACGGCATCATTGCCGGTCTTGTGGGCGGACATTATGCCACGAACACTCGGCAAACCAAATGGCTTTACCACAGTTTGGCATTTATTCACCCGTTAGAGTTTGCAGTGAATGTTTCAATGACTCCTCTCGAACTACCAAACGTGACGGACAAGCTTCTTCGGATGGAGTTGATGGTGTAACATCTTCAGTTTCTAGATTGGACATTGATTCAGATGTAGATTCAAAGGCTGAACCAACTGTACAGTATCAGCCTGTCCCAGCCATTTCAGACTGCAAGTGTGGAATGCCTTTATGTATTTGTGAAGCGCCAGTGCCATCCGTGGATGCAGCTCCCTTGCAGAGCAAAACCGTATCCACCTCTGCCCCTCGGCCGACTCCAAAACCAAAGAAGACAGAAACTGCTTTAAAACCCAAAGCTTCGACGTCTAATAGCAAGCAGAGGTTGGTTGCCTCCAGTTCTGTCTTCAATCTTGGTCAAGCGAACAACGGAATTTCTGATAAAACCCAGACTGATTATGAAGCCAACGGGGAGGGTATGAGAGAAGCTATAAAGAATAGTGACGTTGCTGCCGTCAAGAAGCTTCTGAGTGAGGGTGTTGATGTGAATTACCATGACAAGCAAGGACTTTCTTTGCTGCATTTAGCAGCGGTCTTTAATCAAACTGAGATTGTTTTTGTCCTCATGGATGGTGGAGCAAGCCTGGACTACAAGAATGCACAGGGGGAAACACCATTGGACTGTGCTCCCGCCACTCTCCAATACAAAATGCGACAGAAGATGGAAGAAAATAGAAAACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045732 GO:0048518 GO:0050789 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 FYVE

Protein Analysis

291

Amino Acids

31.49

Weight (kDa)

7.48

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FYVE	PF01363	7 - 64	7.8e-16	FYVE zinc finger
Ank_2	PF12796	206 - 272	3.3e-09	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210
fragaria_vesca	FvH4_1g09680 FvH4_1g09680
malus_domestica	MD02G1105800.v1.1 MD15G1225700.v1.1
prunus_persica	Prupe.7G189300_v2.0.a1
pyrus_communis	pycom02g08370 pycom15g20060
rosa_chinensis	RchiOBHm_Chr2g0096541
rosa_laevigata	RLG00000016647
rosa_multiflora	Rmu_sc0004096.1_g000009
rosa_roxburghii	Rroxscaffold_2G00145550
rosa_rugosa	Rorug02G0058400
rosa_samantha	Rh2AG105500 Rh2BG107800 Rh2CG109600 Rh2DG108600
rosa_wichuraiana	Rw2G008160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	42, 497
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccII	CGCG	1 cut(s)	31
AciI	CCGC	4 cut(s)	29, 97, 719, 819
AcoI	YGGCCR	1 cut(s)	440
AcsI	RAATTY	1 cut(s)	561
AcuI	CTGAAG	1 cut(s)	240
AcyI	GRCGYC	2 cut(s)	39, 494
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	187, 294, 538
AjnI	CCWGG	1 cut(s)	771
AluBI	AGCT	7 cut(s)	26, 54, 224, 401, 488, 617, 652
AluI	AGCT	7 cut(s)	26, 54, 224, 401, 488, 617, 652
Alw21I	GWGCWC	1 cut(s)	817
AlwNI	CAGNNNCTG	1 cut(s)	470
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	6 cut(s)	33, 51, 398, 638, 706, 716
ApoI	RAATTY	1 cut(s)	561
AspLEI	GCGC	2 cut(s)	33, 379
AsuHPI	GGTGA	1 cut(s)	150
BbsI	GAAGAC	2 cut(s)	467, 526
Bbv12I	GWGCWC	1 cut(s)	817
BbvI	GCAGC	6 cut(s)	20, 63, 410, 625, 693, 728
BccI	CCATC	5 cut(s)	227, 236, 394, 752, 844
BceAI	ACGGC	2 cut(s)	89, 626
BciT130I	CCWGG	1 cut(s)	773
BciVI	GTATCC	1 cut(s)	433
BfaI	CTAG	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	380
BfuI	GTATCC	1 cut(s)	433
BisI	GCNGC	6 cut(s)	34, 52, 399, 639, 707, 717
BlsI	GCNGC	6 cut(s)	35, 53, 400, 640, 708, 718
Bme1390I	CCNGG	1 cut(s)	773
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	773
BmsI	GCATC	2 cut(s)	85, 385
BpiI	GAAGAC	2 cut(s)	467, 526
BpmI	CTGGAG	1 cut(s)	508
BsaHI	GRCGYC	2 cut(s)	39, 494
BsaJI	CCNNGG	2 cut(s)	390, 437
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	2 cut(s)	380, 525
Bse3DI	GCAATG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	773
BseDI	CCNNGG	2 cut(s)	390, 437
BseGI	GGATG	4 cut(s)	238, 386, 400, 763
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	647, 726
BseNI	ACTGG	2 cut(s)	380, 525
BseRI	GAGGAG	1 cut(s)	184
BseX3I	CGGCCG	1 cut(s)	440
BseXI	GCAGC	6 cut(s)	20, 63, 410, 625, 693, 728
BseYI	CCCAGC	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	443
BshFI	GGCC	1 cut(s)	442
BsiEI	CGRYCG	1 cut(s)	443
BsiHKAI	GWGCWC	1 cut(s)	817
BsiSI	CCGG	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	311
BsmI	GAATGC	2 cut(s)	360, 790
BsnI	GGCC	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	817
Bsp1407I	TGTACA	1 cut(s)	310
BspACI	CCGC	4 cut(s)	29, 97, 719, 819
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	2 cut(s)	648, 727
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	84
BsrGI	TGTACA	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	380, 525
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	2 cut(s)	390, 437
BssNI	GRCGYC	2 cut(s)	39, 494
Bst2UI	CCWGG	1 cut(s)	773
Bst4CI	ACNGT	6 cut(s)	144, 310, 315, 421, 812, 870
BstACI	GRCGYC	2 cut(s)	39, 494
BstAUI	TGTACA	1 cut(s)	310
BstC8I	GCNNGC	2 cut(s)	506, 769
BstDEI	CTNAG	2 cut(s)	656, 735
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	4 cut(s)	238, 386, 400, 763
BstFNI	CGCG	1 cut(s)	31
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	2 cut(s)	33, 379
BstMCI	CGRYCG	1 cut(s)	443
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 51
BstNI	CCWGG	1 cut(s)	773
BstSCI	CCNGG	1 cut(s)	771
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	6 cut(s)	20, 63, 410, 625, 693, 728
BstV2I	GAAGAC	2 cut(s)	467, 526
BstZI	CGGCCG	1 cut(s)	440
BsuI	GTATCC	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	442
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	4 cut(s)	238, 386, 400, 763
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	181, 387
Cac8I	GCNNGC	2 cut(s)	506, 769
CaiI	CAGNNNCTG	1 cut(s)	470
CfoI	GCGC	2 cut(s)	33, 379
Cfr10I	RCCGGY	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	2 cut(s)	683, 754
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	2 cut(s)	656, 735
DraI	TTTAAA	1 cut(s)	477
EaeI	YGGCCR	1 cut(s)	440
EagI	CGGCCG	1 cut(s)	440
EciI	GGCGGA	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	440
Eco52I	CGGCCG	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	771
FaeI	CATG	2 cut(s)	686, 757
FaiI	YATR	7 cut(s)	106, 364, 588, 608, 620, 684, 755
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	2 cut(s)	682, 753
FauI	CCCGC	1 cut(s)	826
Fnu4HI	GCNGC	6 cut(s)	34, 52, 399, 639, 707, 717
FokI	GGATG	4 cut(s)	245, 373, 407, 770
Fsp4HI	GCNGC	6 cut(s)	34, 52, 399, 639, 707, 717
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	2 cut(s)	32, 378
GluI	GCNGC	6 cut(s)	34, 52, 399, 639, 707, 717
GsaI	CCCAGC	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	508
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	1 cut(s)	85
HhaI	GCGC	2 cut(s)	33, 379
Hin1I	GRCGYC	2 cut(s)	39, 494
Hin1II	CATG	2 cut(s)	686, 757
Hin6I	GCGC	2 cut(s)	31, 377
HinP1I	GCGC	2 cut(s)	31, 377
HindIII	AAGCTT	3 cut(s)	222, 486, 650
HinfI	GANTC	4 cut(s)	191, 278, 290, 445
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	1 cut(s)	150
Hpy188I	TCNGA	5 cut(s)	232, 283, 340, 568, 657
Hpy188III	TCNNGA	3 cut(s)	198, 264, 646
Hpy99I	CGWCG	4 cut(s)	16, 41, 75, 496
HpyCH4III	ACNGT	6 cut(s)	144, 310, 315, 421, 812, 870
HpyCH4IV	ACGT	4 cut(s)	39, 211, 494, 633
HpyCH4V	TGCA	8 cut(s)	45, 51, 174, 345, 398, 409, 709, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 51
HpyF3I	CTNAG	2 cut(s)	656, 735
HpySE526I	ACGT	4 cut(s)	39, 211, 494, 633
Hsp92I	GRCGYC	2 cut(s)	39, 494
Hsp92II	CATG	2 cut(s)	686, 757
HspAI	GCGC	2 cut(s)	31, 377
LmnI	GCTCC	5 cut(s)	4, 31, 406, 764, 820
Lsp1109I	GCAGC	6 cut(s)	20, 63, 410, 625, 693, 728
LweI	GCATC	2 cut(s)	85, 385
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	4 cut(s)	39, 211, 494, 633
MaeIII	GTNAC	3 cut(s)	212, 247, 629
MboII	GAAGA	6 cut(s)	219, 246, 472, 526, 859, 866
MhlI	GDGCHC	1 cut(s)	817
MluCI	AATT	2 cut(s)	561, 676
MlyI	GAGTC	2 cut(s)	185, 439
MnlI	CCTC	9 cut(s)	18, 205, 439, 447, 504, 532, 595, 655, 761
MseI	TTAA	3 cut(s)	57, 476, 726
MspA1I	CMGCKG	1 cut(s)	719
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	773
Mva1269I	GAATGC	2 cut(s)	360, 790
MvaI	CCWGG	1 cut(s)	773
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	42, 51
NlaIII	CATG	2 cut(s)	686, 757
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	2 cut(s)	98, 418
NmuCI	GTSAC	2 cut(s)	212, 629
PcsI	WCGNNNNNNNCGW	1 cut(s)	639
PctI	GAATGC	2 cut(s)	360, 790
PfeI	GAWTC	2 cut(s)	278, 290
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	6 cut(s)	35, 53, 400, 640, 708, 718
PleI	GAGTC	2 cut(s)	185, 439
PpsI	GAGTC	2 cut(s)	185, 439
Psp6I	CCWGG	1 cut(s)	771
PspFI	CCCAGC	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	771
PspN4I	GGNNCC	1 cut(s)	6
PsrI	GAACNNNNNNTAC	2 cut(s)	294, 326
PstNI	CAGNNNCTG	1 cut(s)	470
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SaqAI	TTAA	3 cut(s)	57, 476, 726
SatI	GCNGC	6 cut(s)	34, 52, 399, 639, 707, 717
SchI	GAGTC	2 cut(s)	185, 439
ScrFI	CCNGG	1 cut(s)	773
SduI	GDGCHC	1 cut(s)	817
SfaNI	GCATC	2 cut(s)	85, 385
Sse9I	AATT	2 cut(s)	561, 676
SsiI	CCGC	4 cut(s)	29, 97, 719, 819
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	771
TaaI	ACNGT	6 cut(s)	144, 310, 315, 421, 812, 870
TaiI	ACGT	4 cut(s)	42, 214, 497, 636
TaqI	TCGA	2 cut(s)	199, 491
TasI	AATT	2 cut(s)	561, 676
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	2 cut(s)	278, 290
Tru1I	TTAA	3 cut(s)	57, 476, 726
Tru9I	TTAA	3 cut(s)	57, 476, 726
TscAI	CASTG	2 cut(s)	181, 387
TseFI	GTSAC	2 cut(s)	212, 629
TseI	GCWGC	6 cut(s)	33, 51, 398, 638, 706, 716
Tsp45I	GTSAC	2 cut(s)	212, 629
TspDTI	ATGAA	1 cut(s)	603
TspGWI	ACGGA	3 cut(s)	231, 379, 573
TspRI	CASTG	2 cut(s)	181, 387
Van91I	CCANNNNNTGG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	561
XbaI	TCTAGA	1 cut(s)	263
XspI	CTAG	1 cut(s)	264
ZraI	GACGTC	2 cut(s)	40, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.