Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009642

Physical Location & Seq

Genomic Coordinates Forward (+)

14430692 .. 14434580

Gene Structure 3889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGTTTCCACAAGTCTTGCAGAGACTGCTAAACCCACTGTTGGTGTTAAAAATGAAGTTTCTCAAGTGCCGGAGCAGGAATCTGGTGATCCCGTGGAAGAAAGTGGAATTGTGAGTCATAAGGAACCTGTTACGGCTCATGCCGGATCTTCTGATATAAAGGCTGATTCTGGGAGTGGGGAAGAATTGAAGAATAAGGTGGATGAAAAAGACATTACTACACCCAAAAGTAATGGAACCCCAAACTCAAAGGGCATGTTTCTTTTAGATGACAGTGACATGTATGAAGGTAATGGTTCTGGAACAGAAGAGGAGCAATCAGTTTTCATGAAGGAGGTGGAAAATTTCTTTAAGGAGAGGAACATGGAATTTAAACCTCCTAAGTTTTATGGAGAGGGTTTGAATTGCCTTAAGCTTTGGAGAGGTGTGACAAGATTGGGTGGCTATGATAAGGTGACCTCAAATAAGTTGTGGCGGCAAGTGGGAGAAGCGTTTAGACCTCCAAAGACATGCACTACAGTTTCATGGACATTTCGAGGTTTCTATGAGAAGGCACTCCTAGATTATGAAAGGCATAAATTTGGTACTGAACCACCAATCTCTTCCCTGCCAGAGCCTATGAATATTGATAACCAGTCTGCAGGGTCAGGTCGAGCAAGAAGGGATGCTGCGGCACGTGCCATGCAGGGATGGCACTCACAACGTATCACTGGGAGTGGTGAAGTCAGTGACCCTATCATAAAGGATAAAAATGCTATTTCTTTGCAAAAGCGTGAAAAACAGCTTAAAAGCATTGGTTCACTTAAAAGAAAGAAGCCACCTTTTGTGGAGCAGGTGGTAAAAGCTGCACGTACTAAAGAATCTAAGTTACAATTGGATGTAGATGTGGTCGATCTTGGACCTCCAGCGGATTGGGTGAAGATCAATGTGCAGAGAACTAAAGATTGTTTTGAGGTCTATGCTTTAGTTCCAGGGCTTCTCCGTGAGGAGGTGCGTGTTCAATCAGATCCAGCTGGGCGACTGGTTATAAGTGGAGAACCTGAGCATCCTGATAATCCATGGGGTGTCACGGCTTTCAAAAAGGTTGTCACCTTACCATCAAGAATTGATCCACACCAGACATCAGCTGTGGTCACCCTGCACGGGCAGTTGTTTGTTCGTGTTCCGTTCGAGCAGTCGGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HSP20

Protein Analysis

396

Amino Acids

43.81

Weight (kDa)

6.44

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	106 - 190	2.7e-19	ARID/BRIGHT DNA binding domain
HSP20	PF00011	311 - 393	7.5e-06	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009642)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09750 FvH4_1g09750 FvH4_1g09750 FvH4_1g09750 FvH4_1g09750
malus_domestica	MD02G1107900.v1.1 MD15G1227400.v1.1
prunus_persica	Prupe.7G187900_v2.0.a1 Prupe.7G187900_v2.0.a1
pyrus_communis	pycom02g08670 pycom15g20240
rosa_chinensis	RchiOBHm_Chr2g0096711
rosa_laevigata	RLG00000016664
rosa_multiflora	Rmu_ssc0000215.1_g000063
rosa_roxburghii	Rroxscaffold_2G00145390
rosa_rugosa	Rorug02G0060000 Rorug02G0060100
rosa_samantha	Rh2AG107300 Rh2BG109700 Rh2CG111500 Rh2DG111100
rosa_wichuraiana	Rw2G008320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1028
AarI	CACCTGC	1 cut(s)	823
Acc36I	ACCTGC	1 cut(s)	823
AciI	CCGC	3 cut(s)	475, 671, 908
AclWI	GGATC	4 cut(s)	83, 154, 1001, 1103
AcsI	RAATTY	3 cut(s)	343, 368, 578
AcvI	CACGTG	1 cut(s)	677
AfaI	GTAC	2 cut(s)	586, 853
AfiI	CCNNNNNNNGG	3 cut(s)	41, 988, 1143
AflII	CTTAAG	1 cut(s)	410
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	4 cut(s)	190, 403, 1001, 1078
AjnI	CCWGG	1 cut(s)	970
AluBI	AGCT	5 cut(s)	415, 784, 845, 1013, 1127
AluI	AGCT	5 cut(s)	415, 784, 845, 1013, 1127
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	4 cut(s)	83, 154, 1001, 1103
AlwNI	CAGNNNCTG	1 cut(s)	26
ApeKI	GCWGC	2 cut(s)	668, 845
ApoI	RAATTY	3 cut(s)	343, 368, 578
ArsI	GACNNNNNNTTYG	2 cut(s)	1071, 1103
AspS9I	GGNCC	1 cut(s)	899
AsuHPI	GGTGA	6 cut(s)	98, 466, 731, 928, 1081, 1126
AvaII	GGWCC	1 cut(s)	899
BbrPI	CACGTG	1 cut(s)	677
BbvI	GCAGC	2 cut(s)	655, 832
BccI	CCATC	2 cut(s)	684, 1105
BceAI	ACGGC	2 cut(s)	150, 1086
BciT130I	CCWGG	1 cut(s)	972
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	1 cut(s)	560
BfmI	CTRYAG	2 cut(s)	516, 639
BfrI	CTTAAG	1 cut(s)	410
BfuAI	ACCTGC	1 cut(s)	823
BisI	GCNGC	4 cut(s)	476, 669, 672, 846
BlsI	GCNGC	4 cut(s)	477, 670, 673, 847
Bme1390I	CCNGG	1 cut(s)	972
Bme18I	GGWCC	1 cut(s)	899
BmgT120I	GGNCC	1 cut(s)	899
BmiI	GGNNCC	2 cut(s)	126, 238
BmrFI	CCNGG	1 cut(s)	972
BmrI	ACTGGG	1 cut(s)	720
BmsI	GCATC	2 cut(s)	655, 1054
BmuI	ACTGGG	1 cut(s)	720
BpmI	CTGGAG	1 cut(s)	888
Bpu10I	CCTNAGC	1 cut(s)	1041
BpuEI	CTTGAG	1 cut(s)	48
BsaAI	YACGTR	2 cut(s)	677, 851
BsaJI	CCNNGG	3 cut(s)	93, 971, 1058
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 988, 1143
Bse1I	ACTGG	3 cut(s)	634, 715, 1026
BseBI	CCWGG	1 cut(s)	972
BseDI	CCNNGG	3 cut(s)	93, 971, 1058
BseGI	GGATG	5 cut(s)	208, 670, 695, 883, 1045
BseLI	CCNNNNNNNGG	3 cut(s)	41, 988, 1143
BseMII	CTCAG	1 cut(s)	1032
BseNI	ACTGG	3 cut(s)	634, 715, 1026
BseRI	GAGGAG	2 cut(s)	326, 1001
BseXI	GCAGC	2 cut(s)	655, 832
BseYI	CCCAGC	1 cut(s)	1013
BsgI	GTGCAG	3 cut(s)	831, 950, 1124
BsiSI	CCGG	2 cut(s)	71, 144
BslI	CCNNNNNNNGG	3 cut(s)	41, 988, 1143
BsmAI	GTCTC	1 cut(s)	17
Bsp143I	GATC	7 cut(s)	88, 146, 892, 921, 1006, 1108, 1180
Bsp19I	CCATGG	1 cut(s)	1058
BspACI	CCGC	3 cut(s)	475, 671, 908
BspCNI	CTCAG	1 cut(s)	1033
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	126, 238
BspMAI	CTGCAG	1 cut(s)	643
BspMI	ACCTGC	1 cut(s)	823
BspPI	GGATC	4 cut(s)	83, 154, 1001, 1103
BspTI	CTTAAG	1 cut(s)	410
BsrI	ACTGG	3 cut(s)	634, 715, 1026
BssECI	CCNNGG	3 cut(s)	93, 971, 1058
BssMI	GATC	7 cut(s)	88, 146, 892, 921, 1006, 1108, 1180
BssT1I	CCWWGG	1 cut(s)	1058
Bst2UI	CCWGG	1 cut(s)	972
Bst4CI	ACNGT	3 cut(s)	40, 275, 520
Bst6I	CTCTTC	2 cut(s)	303, 607
BstAFI	CTTAAG	1 cut(s)	410
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstBAI	YACGTR	2 cut(s)	677, 851
BstDEI	CTNAG	3 cut(s)	381, 864, 1041
BstDSI	CCRYGG	2 cut(s)	93, 1058
BstEII	GGTNACC	2 cut(s)	454, 1132
BstF5I	GGATG	5 cut(s)	208, 670, 695, 883, 1045
BstKTI	GATC	7 cut(s)	91, 149, 895, 924, 1009, 1111, 1183
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	7 cut(s)	88, 146, 892, 921, 1006, 1108, 1180
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 677, 691
BstNI	CCWGG	1 cut(s)	972
BstNSI	RCATGY	3 cut(s)	259, 283, 513
BstPI	GGTNACC	2 cut(s)	454, 1132
BstSCI	CCNGG	1 cut(s)	970
BstSFI	CTRYAG	2 cut(s)	516, 639
BstV1I	GCAGC	2 cut(s)	655, 832
BstX2I	RGATCY	2 cut(s)	146, 1006
BstXI	CCANNNNNNTGG	1 cut(s)	912
BstYI	RGATCY	2 cut(s)	146, 1006
BtgI	CCRYGG	2 cut(s)	93, 1058
BtsCI	GGATG	5 cut(s)	208, 670, 695, 883, 1045
BtsIMutI	CAGTG	4 cut(s)	36, 280, 708, 733
BveI	ACCTGC	1 cut(s)	823
CaiI	CAGNNNCTG	1 cut(s)	26
CciI	TCATGA	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	899
Csp6I	GTAC	2 cut(s)	585, 852
CspCI	CAANNNNNGTGG	1 cut(s)	33
CviAII	CATG	9 cut(s)	140, 256, 280, 328, 364, 510, 525, 682, 1059
CviQI	GTAC	2 cut(s)	585, 852
DdeI	CTNAG	3 cut(s)	381, 864, 1041
DpnI	GATC	7 cut(s)	90, 148, 894, 923, 1008, 1110, 1182
DpnII	GATC	7 cut(s)	88, 146, 892, 921, 1006, 1108, 1180
DraI	TTTAAA	1 cut(s)	373
Eam1104I	CTCTTC	2 cut(s)	303, 607
EarI	CTCTTC	2 cut(s)	303, 607
Eco130I	CCWWGG	1 cut(s)	1058
Eco47I	GGWCC	1 cut(s)	899
Eco72I	CACGTG	1 cut(s)	677
Eco91I	GGTNACC	2 cut(s)	454, 1132
EcoO65I	GGTNACC	2 cut(s)	454, 1132
EcoRII	CCWGG	1 cut(s)	970
EcoT14I	CCWWGG	1 cut(s)	1058
ErhI	CCWWGG	1 cut(s)	1058
FaeI	CATG	9 cut(s)	143, 259, 283, 331, 367, 513, 528, 685, 1062
FatI	CATG	9 cut(s)	139, 255, 279, 327, 363, 509, 524, 681, 1058
Fnu4HI	GCNGC	4 cut(s)	476, 669, 672, 846
FokI	GGATG	5 cut(s)	215, 677, 702, 890, 1032
Fsp4HI	GCNGC	4 cut(s)	476, 669, 672, 846
FspBI	CTAG	1 cut(s)	560
GluI	GCNGC	4 cut(s)	476, 669, 672, 846
GsaI	CCCAGC	1 cut(s)	1017
GsuI	CTGGAG	1 cut(s)	888
HapII	CCGG	2 cut(s)	71, 144
Hin1II	CATG	9 cut(s)	143, 259, 283, 331, 367, 513, 528, 685, 1062
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	4 cut(s)	80, 115, 167, 860
HpaII	CCGG	2 cut(s)	71, 144
HphI	GGTGA	6 cut(s)	98, 466, 731, 928, 1081, 1126
Hpy166II	GTNNAC	1 cut(s)	800
Hpy188I	TCNGA	3 cut(s)	154, 1006, 1180
Hpy188III	TCNNGA	4 cut(s)	300, 328, 1049, 1101
Hpy8I	GTNNAC	1 cut(s)	800
HpyAV	CCTTC	4 cut(s)	281, 325, 544, 654
HpyCH4III	ACNGT	3 cut(s)	40, 275, 520
HpyCH4IV	ACGT	3 cut(s)	676, 703, 850
HpyCH4V	TGCA	8 cut(s)	20, 513, 641, 685, 766, 848, 931, 1141
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 677, 691
HpyF3I	CTNAG	3 cut(s)	381, 864, 1041
HpySE526I	ACGT	3 cut(s)	676, 703, 850
Hsp92II	CATG	9 cut(s)	143, 259, 283, 331, 367, 513, 528, 685, 1062
Kzo9I	GATC	7 cut(s)	88, 146, 892, 921, 1006, 1108, 1180
LmnI	GCTCC	3 cut(s)	73, 313, 829
Lsp1109I	GCAGC	2 cut(s)	655, 832
LweI	GCATC	2 cut(s)	655, 1054
MaeI	CTAG	1 cut(s)	560
MaeII	ACGT	3 cut(s)	676, 703, 850
MaeIII	GTNAC	9 cut(s)	130, 275, 427, 454, 728, 867, 1066, 1087, 1132
MalI	GATC	7 cut(s)	90, 148, 894, 923, 1008, 1110, 1182
MboI	GATC	7 cut(s)	88, 146, 892, 921, 1006, 1108, 1180
MboII	GAAGA	7 cut(s)	110, 141, 194, 202, 320, 594, 931
MfeI	CAATTG	1 cut(s)	872
MflI	RGATCY	2 cut(s)	146, 1006
MluCI	AATT	8 cut(s)	108, 185, 343, 368, 403, 578, 872, 1104
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	1158
MseI	TTAA	6 cut(s)	48, 351, 372, 411, 786, 804
MspA1I	CMGCKG	3 cut(s)	908, 1013, 1127
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	2 cut(s)	71, 144
MspR9I	CCNGG	1 cut(s)	972
MunI	CAATTG	1 cut(s)	872
MvaI	CCWGG	1 cut(s)	972
MwoI	GCNNNNNNNGC	3 cut(s)	26, 677, 691
NcoI	CCATGG	1 cut(s)	1058
NdeII	GATC	7 cut(s)	88, 146, 892, 921, 1006, 1108, 1180
NlaIII	CATG	9 cut(s)	143, 259, 283, 331, 367, 513, 528, 685, 1062
NlaIV	GGNNCC	2 cut(s)	126, 238
NmuCI	GTSAC	7 cut(s)	275, 427, 454, 728, 1066, 1087, 1132
NspI	RCATGY	3 cut(s)	259, 283, 513
PagI	TCATGA	1 cut(s)	327
PaqCI	CACCTGC	1 cut(s)	823
PciI	ACATGT	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	80, 167, 860
PkrI	GCNGC	4 cut(s)	477, 670, 673, 847
PleI	GAGTC	1 cut(s)	123
PmaCI	CACGTG	1 cut(s)	677
PmlI	CACGTG	1 cut(s)	677
PpsI	GAGTC	1 cut(s)	123
Ppu21I	YACGTR	2 cut(s)	677, 851
PscI	ACATGT	1 cut(s)	279
PsiI	TTATAA	1 cut(s)	1028
Psp6I	CCWGG	1 cut(s)	970
PspCI	CACGTG	1 cut(s)	677
PspEI	GGTNACC	2 cut(s)	454, 1132
PspFI	CCCAGC	1 cut(s)	1013
PspGI	CCWGG	1 cut(s)	970
PspN4I	GGNNCC	2 cut(s)	126, 238
PspPI	GGNCC	1 cut(s)	899
PstI	CTGCAG	1 cut(s)	643
PstNI	CAGNNNCTG	1 cut(s)	26
PsuI	RGATCY	2 cut(s)	146, 1006
PvuII	CAGCTG	2 cut(s)	1013, 1127
RsaI	GTAC	2 cut(s)	586, 853
RsaNI	GTAC	2 cut(s)	585, 852
SaqAI	TTAA	6 cut(s)	48, 351, 372, 411, 786, 804
SatI	GCNGC	4 cut(s)	476, 669, 672, 846
Sau3AI	GATC	7 cut(s)	88, 146, 892, 921, 1006, 1108, 1180
Sau96I	GGNCC	1 cut(s)	899
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	972
SfaNI	GCATC	2 cut(s)	655, 1054
SfcI	CTRYAG	2 cut(s)	516, 639
SinI	GGWCC	1 cut(s)	899
SmlI	CTYRAG	2 cut(s)	63, 410
SmoI	CTYRAG	2 cut(s)	63, 410
Sse9I	AATT	8 cut(s)	108, 185, 343, 368, 403, 578, 872, 1104
SsiI	CCGC	3 cut(s)	475, 671, 908
SspI	AATATT	1 cut(s)	625
SspMI	CTAG	1 cut(s)	560
StyD4I	CCNGG	1 cut(s)	970
StyI	CCWWGG	1 cut(s)	1058
TaaI	ACNGT	3 cut(s)	40, 275, 520
TaiI	ACGT	3 cut(s)	679, 706, 853
TaqI	TCGA	4 cut(s)	535, 652, 891, 1170
TasI	AATT	8 cut(s)	108, 185, 343, 368, 403, 578, 872, 1104
TauI	GCSGC	2 cut(s)	478, 674
TfiI	GAWTC	3 cut(s)	80, 167, 860
Tru1I	TTAA	6 cut(s)	48, 351, 372, 411, 786, 804
Tru9I	TTAA	6 cut(s)	48, 351, 372, 411, 786, 804
TscAI	CASTG	4 cut(s)	43, 280, 715, 733
TseFI	GTSAC	7 cut(s)	275, 427, 454, 728, 1066, 1087, 1132
TseI	GCWGC	2 cut(s)	668, 845
Tsp45I	GTSAC	7 cut(s)	275, 427, 454, 728, 1066, 1087, 1132
TspDTI	ATGAA	8 cut(s)	69, 219, 300, 316, 344, 513, 582, 635
TspGWI	ACGGA	2 cut(s)	971, 1155
TspRI	CASTG	4 cut(s)	43, 280, 715, 733
Vha464I	CTTAAG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	899
XapI	RAATTY	3 cut(s)	343, 368, 578
XceI	RCATGY	3 cut(s)	259, 283, 513
XspI	CTAG	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.