pycom15g21530

Ferredoxin-NADP reductase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
15464205 .. 15466905
2701 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1320 bp
ATGTTGTGTAACAATACACTTTGCACTCTTTGTGAATCAAAAAATCAAAGTTCGGGTGAGAGTCATACATTACACAAAAGACTTATCCTTACATCTGCCACTGCGTTGCCCTCAAATCTCTACCACCTATCTTTAATCCAAAACCCACCAAAAAGATCCCACATTTCACACAATTCTCTCATAAAACATCGAACTTTTGCTACTCTTTTATTTCTTCTCCCTGTTCCTCCTCAGCATTTTAACTCCACAGCCATGGCTGCAGCTGTAACTGCTGCTGTCTCCTTCCCCTCCTCCAAGTCCTCCGCCCTCCCCACCAGGACCTCCATAATCTCACCTGACAGAATCACCCTAAAAAAGGTTCCTTTGTACAACAACAATGCTGGCGGGAGAGTGGCTTTGATCAGAGCCCAGGTGACCACCACCGAGCCTGCTCCACCTGCCAAGGTTGTGAAGGAATCCAAGAAGCAAGAAGAAGGGGTTGTTGTCAACAAATTCAAGCCCAAGAATCCCTACACTGGCAGAGTCCTTCTCAACACTAGGATCACTGCTGATGATGCACCTGGTGAGACGTGGCACATGGTCTTTAGCACTGAAGGAGAGGTGCCCTACAGAGAAGGGCAGTCCATTGGAGTTATTCCAGACGGTATTGACAAAAATGGGAAGCCTCACAAGCTGAGGTTGTACTCAATCGCCAGCAGTGCCCTTGGTGACTTTGGAGACTCCAAAACTGTTTCTCTTTGTGTGAAACGTCTTGTGTACACCAATGACGCAGGCGAAATTGTTAAAGGAGTGTGTTCAAACTTTTTGTGTGACTTGAAGCCTGGGAGTGATGTCACGATCACTGGACCAGTTGGGAAAGAAATGCTTATGCCAAAGGATCCTAATGCAACAATCATCATGCTTGGAACTGGAACTGGAATCGCTCCTTTTCGATCATTCTTGTGGAAAATGTTTTTCGAGAAGCACGAAGACTACAAGTTCAACGGTTTGGCATGGCTCTTCTTGGGTGTTCCTACAAGTAGCTCATTGCTCTACAAGGAGGAATTTGAGAAGATGAAGGAAAAGGCCCCCGATAACTTCAGGCTTGACTTTGCCGTCAGCAGAGAGCAAACCAACGACAAGGGAGAGAAGATGTACATCCAAACCAGAATGGCTCAGTATGCAGAAGAGCTATGGGAGTTACTCAAAAAAGACAACACCTACGTTTACATGTGTGGTCTCAAGGGAATGGAGAAGGGTATTGATGACATCATGGTGTCGTTGGCCGCGAAAGACGGTAAGATAATAGATTGCACCACATTTGTCGAAAAAATGCATTGA

Protein Analysis

440

Amino Acids

48.63

Weight (kDa)

9.03

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_1 PF00175 300 - 414 5.2e-27 Oxidoreductase NAD-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010146)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 445
AasI GACNNNNNNGTC 1 cut(s) 1094
Acc36I ACCTGC 1 cut(s) 445
AccB1I GGYRCC 1 cut(s) 601
AccII CGCG 1 cut(s) 1268
AciI CCGC 3 cut(s) 303, 384, 1266
AclWI GGATC 4 cut(s) 150, 548, 872, 885
AcoI YGGCCR 1 cut(s) 1263
AcsI RAATTY 2 cut(s) 491, 1043
AcuI CTGAAG 2 cut(s) 612, 1063
AdeI CACNNNGTG 1 cut(s) 563
AfaI GTAC 4 cut(s) 368, 683, 758, 1136
AfiI CCNNNNNNNGG 2 cut(s) 355, 515
AflIII ACRYGT 1 cut(s) 1209
AgsI TTSAA 4 cut(s) 496, 798, 817, 982
AjiI CACGTC 1 cut(s) 570
AjnI CCWGG 4 cut(s) 314, 408, 559, 820
AluBI AGCT 4 cut(s) 263, 673, 1023, 1171
AluI AGCT 4 cut(s) 263, 673, 1023, 1171
Alw26I GTCTC 4 cut(s) 283, 560, 711, 1223
AlwI GGATC 4 cut(s) 150, 548, 872, 885
AoxI GGCC 2 cut(s) 1065, 1263
ApeKI GCWGC 3 cut(s) 257, 260, 272
ApoI RAATTY 2 cut(s) 491, 1043
AspS9I GGNCC 3 cut(s) 318, 845, 1066
AsuHPI GGTGA 6 cut(s) 68, 324, 337, 424, 575, 719
AvaII GGWCC 2 cut(s) 318, 845
BaeGI GKGCMC 2 cut(s) 606, 703
BamHI GGATCC 1 cut(s) 877
BanI GGYRCC 1 cut(s) 601
BanII GRGCYC 1 cut(s) 409
BbsI GAAGAC 1 cut(s) 975
BbvCI CCTCAGC 2 cut(s) 231, 674
BbvI GCAGC 3 cut(s) 244, 259, 272
BceAI ACGGC 1 cut(s) 1079
BciT130I CCWGG 4 cut(s) 316, 410, 561, 822
BclI TGATCA 1 cut(s) 399
BcoDI GTCTC 4 cut(s) 283, 560, 711, 1223
BfaI CTAG 1 cut(s) 537
BfmI CTRYAG 2 cut(s) 258, 607
BfuAI ACCTGC 1 cut(s) 445
BisI GCNGC 4 cut(s) 258, 261, 273, 1266
BlsI GCNGC 4 cut(s) 259, 262, 274, 1267
Bme1390I CCNGG 4 cut(s) 316, 410, 561, 822
Bme18I GGWCC 2 cut(s) 318, 845
BmgBI CACGTC 1 cut(s) 570
BmgT120I GGNCC 3 cut(s) 318, 845, 1066
BmiI GGNNCC 4 cut(s) 360, 603, 879, 1068
BmrFI CCNGG 4 cut(s) 316, 410, 561, 822
BmsI GCATC 1 cut(s) 544
BpiI GAAGAC 1 cut(s) 975
BplI GAGNNNNNCTC 2 cut(s) 513, 545
Bpu10I CCTNAGC 2 cut(s) 231, 674
BpuEI CTTGAG 1 cut(s) 1205
BsaBI GATNNNNATC 1 cut(s) 1136
BsaI GGTCTC 1 cut(s) 1223
BsaJI CCNNGG 5 cut(s) 252, 408, 441, 703, 821
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 515
Bse1I ACTGG 5 cut(s) 520, 847, 848, 913, 919
Bse3DI GCAATG 1 cut(s) 1025
Bse8I GATNNNNATC 1 cut(s) 1136
BseBI CCWGG 4 cut(s) 316, 410, 561, 822
BseDI CCNNGG 5 cut(s) 252, 408, 441, 703, 821
BseGI GGATG 1 cut(s) 1137
BseJI GATNNNNATC 1 cut(s) 1136
BseLI CCNNNNNNNGG 2 cut(s) 355, 515
BseMI GCAATG 1 cut(s) 1025
BseMII CTCAG 3 cut(s) 245, 665, 1169
BseNI ACTGG 5 cut(s) 520, 847, 848, 913, 919
BseRI GAGGAG 2 cut(s) 219, 280
BseSI GKGCMC 2 cut(s) 606, 703
BseXI GCAGC 3 cut(s) 244, 259, 272
Bsh1236I CGCG 1 cut(s) 1268
BshFI GGCC 2 cut(s) 1067, 1265
BshNI GGYRCC 1 cut(s) 601
BslI CCNNNNNNNGG 2 cut(s) 355, 515
BsmAI GTCTC 4 cut(s) 283, 560, 711, 1223
BsmBI CGTCTC 1 cut(s) 560
BsnI GGCC 2 cut(s) 1067, 1265
Bso31I GGTCTC 1 cut(s) 1223
Bsp1286I GDGCHC 3 cut(s) 409, 606, 703
Bsp1407I TGTACA 3 cut(s) 366, 756, 1134
Bsp143I GATC 6 cut(s) 155, 399, 540, 837, 877, 932
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 3 cut(s) 303, 384, 1266
BspANI GGCC 2 cut(s) 1067, 1265
BspCNI CTCAG 3 cut(s) 244, 666, 1168
BspFNI CGCG 1 cut(s) 1268
BspLI GGNNCC 4 cut(s) 360, 603, 879, 1068
BspMAI CTGCAG 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 445
BspPI GGATC 4 cut(s) 150, 548, 872, 885
BspQI GCTCTTC 2 cut(s) 1004, 1161
BspT107I GGYRCC 1 cut(s) 601
BspTNI GGTCTC 1 cut(s) 1223
BsrDI GCAATG 1 cut(s) 1025
BsrGI TGTACA 3 cut(s) 366, 756, 1134
BsrI ACTGG 5 cut(s) 520, 847, 848, 913, 919
BssECI CCNNGG 5 cut(s) 252, 408, 441, 703, 821
BssMI GATC 6 cut(s) 155, 399, 540, 837, 877, 932
BssT1I CCWWGG 3 cut(s) 252, 441, 703
Bst2UI CCWGG 4 cut(s) 316, 410, 561, 822
Bst4CI ACNGT 4 cut(s) 644, 730, 986, 1277
Bst6I CTCTTC 2 cut(s) 1004, 1161
BstAUI TGTACA 3 cut(s) 366, 756, 1134
BstC8I GCNNGC 4 cut(s) 382, 429, 694, 772
BstDEI CTNAG 3 cut(s) 231, 674, 1155
BstDSI CCRYGG 1 cut(s) 252
BstEII GGTNACC 1 cut(s) 412
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 1 cut(s) 1137
BstFNI CGCG 1 cut(s) 1268
BstKTI GATC 6 cut(s) 158, 402, 543, 840, 880, 935
BstMAI GTCTC 4 cut(s) 283, 560, 711, 1223
BstMBI GATC 6 cut(s) 155, 399, 540, 837, 877, 932
BstMWI GCNNNNNNNGC 7 cut(s) 257, 269, 437, 554, 670, 698, 1160
BstNI CCWGG 4 cut(s) 316, 410, 561, 822
BstNSI RCATGY 1 cut(s) 1213
BstPI GGTNACC 1 cut(s) 412
BstSCI CCNGG 4 cut(s) 314, 408, 559, 820
BstSFI CTRYAG 2 cut(s) 258, 607
BstSLI GKGCMC 2 cut(s) 606, 703
BstUI CGCG 1 cut(s) 1268
BstV1I GCAGC 3 cut(s) 244, 259, 272
BstV2I GAAGAC 1 cut(s) 975
BstX2I RGATCY 2 cut(s) 155, 877
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 2 cut(s) 155, 877
BsuRI GGCC 2 cut(s) 1067, 1265
BtgI CCRYGG 1 cut(s) 252
BtrI CACGTC 1 cut(s) 570
BtsCI GGATG 1 cut(s) 1137
BtsI GCAGTG 3 cut(s) 99, 543, 703
BtsIMutI CAGTG 6 cut(s) 99, 513, 543, 588, 703, 840
BveI ACCTGC 1 cut(s) 445
Cac8I GCNNGC 4 cut(s) 382, 429, 694, 772
Cfr13I GGNCC 3 cut(s) 318, 845, 1066
CseI GACGC 1 cut(s) 776
CsiI ACCWGGT 1 cut(s) 559
Csp6I GTAC 4 cut(s) 367, 682, 757, 1135
CviAII CATG 6 cut(s) 253, 577, 898, 993, 1210, 1252
CviQI GTAC 4 cut(s) 367, 682, 757, 1135
DdeI CTNAG 3 cut(s) 231, 674, 1155
DpnI GATC 6 cut(s) 157, 401, 542, 839, 879, 934
DpnII GATC 6 cut(s) 155, 399, 540, 837, 877, 932
DraIII CACNNNGTG 1 cut(s) 563
DrdI GACNNNNNNGTC 1 cut(s) 1094
DseDI GACNNNNNNGTC 1 cut(s) 1094
EaeI YGGCCR 1 cut(s) 1263
Eam1104I CTCTTC 2 cut(s) 1004, 1161
EarI CTCTTC 2 cut(s) 1004, 1161
EciI GGCGGA 1 cut(s) 292
Eco130I CCWWGG 3 cut(s) 252, 441, 703
Eco24I GRGCYC 1 cut(s) 409
Eco31I GGTCTC 1 cut(s) 1223
Eco47I GGWCC 2 cut(s) 318, 845
Eco57I CTGAAG 2 cut(s) 612, 1063
Eco91I GGTNACC 1 cut(s) 412
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoO109I RGGNCCY 2 cut(s) 318, 1066
EcoO65I GGTNACC 1 cut(s) 412
EcoRII CCWGG 4 cut(s) 314, 408, 559, 820
EcoT14I CCWWGG 3 cut(s) 252, 441, 703
EcoT22I ATGCAT 1 cut(s) 1317
EcoT38I GRGCYC 1 cut(s) 409
ErhI CCWWGG 3 cut(s) 252, 441, 703
Esp3I CGTCTC 1 cut(s) 560
FaeI CATG 6 cut(s) 256, 580, 901, 996, 1213, 1255
FalI AAGNNNNNCTT 2 cut(s) 849, 881
FatI CATG 6 cut(s) 252, 576, 897, 992, 1209, 1251
FauI CCCGC 1 cut(s) 377
FbaI TGATCA 1 cut(s) 399
Fnu4HI GCNGC 4 cut(s) 258, 261, 273, 1266
FokI GGATG 1 cut(s) 1124
FriOI GRGCYC 1 cut(s) 409
Fsp4HI GCNGC 4 cut(s) 258, 261, 273, 1266
FspBI CTAG 1 cut(s) 537
GluI GCNGC 4 cut(s) 258, 261, 273, 1266
HaeIII GGCC 2 cut(s) 1067, 1265
HgaI GACGC 1 cut(s) 776
Hin1II CATG 6 cut(s) 256, 580, 901, 996, 1213, 1255
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 8 cut(s) 35, 61, 342, 455, 505, 522, 719, 918
HphI GGTGA 6 cut(s) 68, 324, 337, 424, 575, 719
Hpy166II GTNNAC 4 cut(s) 487, 757, 759, 1207
Hpy188I TCNGA 1 cut(s) 404
Hpy188III TCNNGA 3 cut(s) 638, 835, 958
Hpy8I GTNNAC 4 cut(s) 487, 757, 759, 1207
HpyAV CCTTC 8 cut(s) 292, 445, 467, 536, 587, 608, 1051, 1228
HpyCH4III ACNGT 4 cut(s) 644, 730, 986, 1277
HpyCH4IV ACGT 3 cut(s) 569, 748, 1203
HpyCH4V TGCA 7 cut(s) 24, 260, 557, 887, 1163, 1293, 1315
HpyF10VI GCNNNNNNNGC 7 cut(s) 257, 269, 437, 554, 670, 698, 1160
HpyF3I CTNAG 3 cut(s) 231, 674, 1155
HpySE526I ACGT 3 cut(s) 569, 748, 1203
Hsp92II CATG 6 cut(s) 256, 580, 901, 996, 1213, 1255
Ksp22I TGATCA 1 cut(s) 399
Kzo9I GATC 6 cut(s) 155, 399, 540, 837, 877, 932
LguI GCTCTTC 2 cut(s) 1004, 1161
LmnI GCTCC 2 cut(s) 436, 928
Lsp1109I GCAGC 3 cut(s) 244, 259, 272
LweI GCATC 1 cut(s) 544
MabI ACCWGGT 1 cut(s) 559
MaeI CTAG 1 cut(s) 537
MaeII ACGT 3 cut(s) 569, 748, 1203
MaeIII GTNAC 7 cut(s) 8, 265, 412, 707, 809, 832, 1179
MalI GATC 6 cut(s) 157, 401, 542, 839, 879, 934
MboI GATC 6 cut(s) 155, 399, 540, 837, 877, 932
MboII GAAGA 7 cut(s) 206, 482, 980, 991, 1063, 1141, 1178
MflI RGATCY 2 cut(s) 155, 877
MhlI GDGCHC 3 cut(s) 409, 606, 703
MluCI AATT 4 cut(s) 172, 491, 777, 1043
MlyI GAGTC 3 cut(s) 70, 531, 713
Mph1103I ATGCAT 1 cut(s) 1317
MseI TTAA 3 cut(s) 134, 240, 783
MslI CAYNNNNRTG 3 cut(s) 251, 940, 1253
MspA1I CMGCKG 1 cut(s) 263
MspR9I CCNGG 4 cut(s) 316, 410, 561, 822
MvaI CCWGG 4 cut(s) 316, 410, 561, 822
MvnI CGCG 1 cut(s) 1268
MwoI GCNNNNNNNGC 7 cut(s) 257, 269, 437, 554, 670, 698, 1160
NcoI CCATGG 1 cut(s) 252
NdeII GATC 6 cut(s) 155, 399, 540, 837, 877, 932
NlaIII CATG 6 cut(s) 256, 580, 901, 996, 1213, 1255
NlaIV GGNNCC 4 cut(s) 360, 603, 879, 1068
NmuCI GTSAC 4 cut(s) 412, 707, 809, 832
NsiI ATGCAT 1 cut(s) 1317
NspI RCATGY 1 cut(s) 1213
PaqCI CACCTGC 1 cut(s) 445
PciI ACATGT 1 cut(s) 1209
PciSI GCTCTTC 2 cut(s) 1004, 1161
PcsI WCGNNNNNNNCGW 2 cut(s) 963, 1265
PfeI GAWTC 5 cut(s) 35, 342, 455, 505, 918
PkrI GCNGC 4 cut(s) 259, 262, 274, 1267
PleI GAGTC 3 cut(s) 69, 530, 713
PpsI GAGTC 3 cut(s) 69, 530, 713
PpuMI RGGWCCY 1 cut(s) 318
PscI ACATGT 1 cut(s) 1209
Psp5II RGGWCCY 1 cut(s) 318
Psp6I CCWGG 4 cut(s) 314, 408, 559, 820
PspEI GGTNACC 1 cut(s) 412
PspGI CCWGG 4 cut(s) 314, 408, 559, 820
PspN4I GGNNCC 4 cut(s) 360, 603, 879, 1068
PspPI GGNCC 3 cut(s) 318, 845, 1066
PspPPI RGGWCCY 1 cut(s) 318
PsrI GAACNNNNNNTAC 2 cut(s) 184, 216
PstI CTGCAG 1 cut(s) 262
PsuI RGATCY 2 cut(s) 155, 877
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 4 cut(s) 368, 683, 758, 1136
RsaNI GTAC 4 cut(s) 367, 682, 757, 1135
RseI CAYNNNNRTG 3 cut(s) 251, 940, 1253
SapI GCTCTTC 2 cut(s) 1004, 1161
SaqAI TTAA 3 cut(s) 134, 240, 783
SatI GCNGC 4 cut(s) 258, 261, 273, 1266
Sau3AI GATC 6 cut(s) 155, 399, 540, 837, 877, 932
Sau96I GGNCC 3 cut(s) 318, 845, 1066
SchI GAGTC 3 cut(s) 70, 531, 713
ScrFI CCNGG 4 cut(s) 316, 410, 561, 822
SduI GDGCHC 3 cut(s) 409, 606, 703
SexAI ACCWGGT 1 cut(s) 559
SfaNI GCATC 1 cut(s) 544
SfcI CTRYAG 2 cut(s) 258, 607
SinI GGWCC 2 cut(s) 318, 845
SmiMI CAYNNNNRTG 3 cut(s) 251, 940, 1253
SmlI CTYRAG 1 cut(s) 1220
SmoI CTYRAG 1 cut(s) 1220
Sse9I AATT 4 cut(s) 172, 491, 777, 1043
SsiI CCGC 3 cut(s) 303, 384, 1266
SspMI CTAG 1 cut(s) 537
StyD4I CCNGG 4 cut(s) 314, 408, 559, 820
StyI CCWWGG 3 cut(s) 252, 441, 703
TaaI ACNGT 4 cut(s) 644, 730, 986, 1277
TaiI ACGT 3 cut(s) 572, 751, 1206
TaqI TCGA 4 cut(s) 190, 931, 957, 1305
TasI AATT 4 cut(s) 172, 491, 777, 1043
TatI WGTACW 4 cut(s) 366, 681, 756, 1134
TauI GCSGC 1 cut(s) 1268
TfiI GAWTC 5 cut(s) 35, 342, 455, 505, 918
Tru1I TTAA 3 cut(s) 134, 240, 783
Tru9I TTAA 3 cut(s) 134, 240, 783
TscAI CASTG 6 cut(s) 106, 520, 550, 595, 703, 847
TseFI GTSAC 4 cut(s) 412, 707, 809, 832
TseI GCWGC 3 cut(s) 257, 260, 272
Tsp45I GTSAC 4 cut(s) 412, 707, 809, 832
TspDTI ATGAA 1 cut(s) 1070
TspRI CASTG 6 cut(s) 106, 520, 550, 595, 703, 847
VpaK11BI GGWCC 2 cut(s) 318, 845
XagI CCTNNNNNAGG 1 cut(s) 353
XapI RAATTY 2 cut(s) 491, 1043
XceI RCATGY 1 cut(s) 1213
XspI CTAG 1 cut(s) 537
Zsp2I ATGCAT 1 cut(s) 1317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.