pycom15g21720

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
15755844 .. 15760054
4211 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1479 bp
ATGAGAATGAATTTGAAGCGGTCGAGGAAATCGAATTCGGTATCTTGGGCTTCTGGACCCGATCTTCGTCAGGTAAAGCTGTTCTCTTCTGAAGATTGTCCTGTGGCTGTTGGCGTGAAATATCAAAATCATCTTCAAGCAAAGGTGTCATATATGTCGCGTTCAGCTCCTATAGAACATGATATTCCCCCCGGGTTTGAACGCTGTGTTCCATTGAGACAACCAAAAGTGGAACGGCCACTCATCCGTCAGATTCAATGGAAATGCCCTTCCAGGTTTGTCGTGAATGAAGCCTGGCAAGTGGCAGCAGGTGAGGAAAGTGAGGAAGTCGAGGCTCAAAAGTTGAGAGTGATGAGAGTGCTCGAAGCAGCTTATCCTCGTCTTTCTGCAATTCCCCCTAACCCCTCTGTTTCTGCGGATGTAAAAGCTGAGCGTTGTGACGACAGCCTCACTCCATCTGCCCCCCTTATTCCAATTGAAGAAATTGAAGAAGAGTCCCAGAATTTACCATCATCTGATATGGAATTGGATTCCGATGCAGAATGTAAGCCACCAGCCTTGCCCCAAGGTCTGCCCGCGTCTCCTCAGCAAATTGCCGATGATAAACCATCGCTAGGAAACTTACCTAGCCAAAATGCGGATGTGATTGCTGCTGCAGTCGCATTGACTGCAATCGTCGAAAGCTCAGAGAAGGGAAGTTTGATTGATACTGATTTGCTCGTTAAAATTCTAAGTGACCCGAAAATGATCCAGAAATTGATTAACGAACCCGGATCACTGGCCAAACTAGGAGATGCACCAACCAACTCCTTTACTGCACCCATGCCAAAGACAACAGTTCCATCAGTTCCCTCATCTCTTCCAAAAACTGATATGCTAACGACTGCAGGTGGAAACTTGTTCCCTATGGCAGGTACAGTGGGACTGGGAACTACTATGAATGCAATCCCTCTTCAATCAGGTAGTGTTCAAATGTCCGGGTTGAACCGACCCGTACCATCACCACCCGTGCCCGTCCCCCAATCCAACTTTGGCACGTTACCTAGGCTGCCAAATCAAATTCAAACACAACCCACCATCGGTGCAATGACTTATCCGAACAGAGCTCCATCACCGGCATTCCTCGTCAGGGAAGCCCCGCTCCCTCCGGCGAAGAATATCAACAACTGTAAGAACCTCATCATGCAACATGGAACGGAAAAGCAAGAAATCCCTTACCCCTTCGTTGCACAAAAACAAATTGGTAACAAATTTAATCTCTCGAAAGACATGAAAATGGCACCAAACTTTAAACCAGTAGGAAAGAAACCAAAGAAGCCAAAACAGTGCAAGTACTTTAAGGGCTCCAACGGATGCCGTAACGGCGTTAATTGCAAATTCCAGCATAACATGCCGCTTCAATGGGGTAACGGTAACCTTATTGGGGGCCGTATTGCAAAGAGAGCGAAACCTAATGGGGTTAATACCTTAAGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

493

Amino Acids

53.43

Weight (kDa)

9.35

Isoelectric Point (pI)

59.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 299, 878
Acc36I ACCTGC 3 cut(s) 299, 878, 902
AccB1I GGYRCC 1 cut(s) 1279
AccBSI CCGCTC 1 cut(s) 1141
AccII CGCG 2 cut(s) 160, 578
AciI CCGC 6 cut(s) 19, 416, 576, 638, 1139, 1394
AclWI GGATC 2 cut(s) 742, 781
AcoI YGGCCR 2 cut(s) 236, 780
AcsI RAATTY 7 cut(s) 10, 34, 502, 726, 1059, 1250, 1376
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 3 cut(s) 916, 996, 1334
AfiI CCNNNNNNNGG 6 cut(s) 614, 637, 911, 1079, 1129, 1423
AflII CTTAAG 1 cut(s) 1468
AjnI CCWGG 2 cut(s) 272, 293
AluBI AGCT 6 cut(s) 79, 167, 371, 428, 684, 1106
AluI AGCT 6 cut(s) 79, 167, 371, 428, 684, 1106
Alw21I GWGCWC 2 cut(s) 363, 1108
Alw26I GTCTC 2 cut(s) 211, 585
AlwI GGATC 2 cut(s) 742, 781
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 3 cut(s) 236, 780, 1426
ApeKI GCWGC 5 cut(s) 305, 368, 650, 653, 1048
ApoI RAATTY 7 cut(s) 10, 34, 502, 726, 1059, 1250, 1376
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AspA2I CCTAGG 1 cut(s) 1043
AspS9I GGNCC 2 cut(s) 56, 1426
AsuC2I CCSGG 4 cut(s) 192, 193, 771, 979
AsuHPI GGTGA 3 cut(s) 323, 993, 1104
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 1 cut(s) 56
AvrII CCTAGG 1 cut(s) 1043
BaeGI GKGCMC 1 cut(s) 1014
BalI TGGCCA 1 cut(s) 782
BanI GGYRCC 1 cut(s) 1279
BanII GRGCYC 2 cut(s) 1108, 1346
Bbv12I GWGCWC 2 cut(s) 363, 1108
BbvCI CCTCAGC 1 cut(s) 585
BbvI GCAGC 5 cut(s) 317, 380, 637, 640, 1035
BccI CCATC 7 cut(s) 463, 517, 616, 850, 1006, 1085, 1117
BceAI ACGGC 4 cut(s) 251, 1341, 1378, 1413
BciT130I CCWGG 2 cut(s) 274, 295
BcnI CCSGG 4 cut(s) 192, 193, 771, 979
BcoDI GTCTC 2 cut(s) 211, 585
BfaI CTAG 4 cut(s) 614, 627, 788, 1044
BfmI CTRYAG 3 cut(s) 171, 654, 885
BfrI CTTAAG 1 cut(s) 1468
BfuAI ACCTGC 3 cut(s) 299, 878, 902
BglI GCCNNNNNGGC 1 cut(s) 1362
BisI GCNGC 6 cut(s) 306, 369, 651, 654, 1049, 1394
BlnI CCTAGG 1 cut(s) 1043
BlpI GCTNAGC 1 cut(s) 429
BlsI GCNGC 6 cut(s) 307, 370, 652, 655, 1050, 1395
BmcAI AGTACT 1 cut(s) 1334
Bme1390I CCNGG 6 cut(s) 192, 193, 274, 295, 771, 979
Bme18I GGWCC 1 cut(s) 56
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 56, 1426
BmiI GGNNCC 4 cut(s) 58, 1281, 1345, 1427
BmrFI CCNGG 6 cut(s) 192, 193, 274, 295, 771, 979
BmrI ACTGGG 1 cut(s) 935
BmsI GCATC 3 cut(s) 526, 784, 1343
BmuI ACTGGG 1 cut(s) 935
Bpu10I CCTNAGC 1 cut(s) 585
Bpu1102I GCTNAGC 1 cut(s) 429
BpuMI CCSGG 4 cut(s) 192, 193, 771, 979
BsaJI CCNNGG 4 cut(s) 190, 191, 565, 1043
Bsc4I CCNNNNNNNGG 6 cut(s) 614, 637, 911, 1079, 1129, 1423
Bse118I RCCGGY 1 cut(s) 1114
Bse1I ACTGG 3 cut(s) 783, 930, 1295
Bse3DI GCAATG 1 cut(s) 1092
BseBI CCWGG 2 cut(s) 274, 295
BseDI CCNNGG 4 cut(s) 190, 191, 565, 1043
BseGI GGATG 5 cut(s) 243, 424, 646, 1358, 1479
BseLI CCNNNNNNNGG 6 cut(s) 614, 637, 911, 1079, 1129, 1423
BseMI GCAATG 1 cut(s) 1092
BseMII CTCAG 3 cut(s) 420, 599, 699
BseNI ACTGG 3 cut(s) 783, 930, 1295
BseRI GAGGAG 1 cut(s) 573
BseSI GKGCMC 1 cut(s) 1014
BseXI GCAGC 5 cut(s) 317, 380, 637, 640, 1035
BsgI GTGCAG 1 cut(s) 801
Bsh1236I CGCG 2 cut(s) 160, 578
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 3 cut(s) 238, 782, 1428
BshNI GGYRCC 1 cut(s) 1279
BsiEI CGRYCG 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 363, 1108
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 5 cut(s) 192, 771, 978, 1115, 1148
BslFI GGGAC 3 cut(s) 481, 936, 1001
BslI CCNNNNNNNGG 6 cut(s) 614, 637, 911, 1079, 1129, 1423
BsmAI GTCTC 2 cut(s) 211, 585
BsmBI CGTCTC 1 cut(s) 585
BsmFI GGGAC 3 cut(s) 481, 936, 1001
BsmI GAATGC 2 cut(s) 946, 1118
BsnI GGCC 3 cut(s) 238, 782, 1428
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 4 cut(s) 363, 1014, 1108, 1346
Bsp143I GATC 3 cut(s) 61, 747, 773
Bsp1720I GCTNAGC 1 cut(s) 429
BspACI CCGC 6 cut(s) 19, 416, 576, 638, 1139, 1394
BspANI GGCC 3 cut(s) 238, 782, 1428
BspCNI CTCAG 3 cut(s) 421, 598, 698
BspFNI CGCG 2 cut(s) 160, 578
BspLI GGNNCC 4 cut(s) 58, 1281, 1345, 1427
BspMAI CTGCAG 2 cut(s) 658, 889
BspMI ACCTGC 3 cut(s) 299, 878, 902
BspPI GGATC 2 cut(s) 742, 781
BspT107I GGYRCC 1 cut(s) 1279
BspTI CTTAAG 1 cut(s) 1468
BsrBI CCGCTC 1 cut(s) 1141
BsrDI GCAATG 1 cut(s) 1092
BsrFI RCCGGY 1 cut(s) 1114
BsrI ACTGG 3 cut(s) 783, 930, 1295
BssAI RCCGGY 1 cut(s) 1114
BssECI CCNNGG 4 cut(s) 190, 191, 565, 1043
BssMI GATC 3 cut(s) 61, 747, 773
BssT1I CCWWGG 2 cut(s) 565, 1043
Bst2UI CCWGG 2 cut(s) 274, 295
Bst4CI ACNGT 5 cut(s) 838, 919, 1169, 1326, 1412
Bst6I CTCTTC 4 cut(s) 91, 486, 864, 957
BstAFI CTTAAG 1 cut(s) 1468
BstAPI GCANNNNNTGC 2 cut(s) 668, 1390
BstC8I GCNNGC 1 cut(s) 576
BstDEI CTNAG 4 cut(s) 429, 585, 685, 731
BstEII GGTNACC 1 cut(s) 1412
BstENI CCTNNNNNAGG 1 cut(s) 909
BstF5I GGATG 5 cut(s) 243, 424, 646, 1358, 1479
BstFNI CGCG 2 cut(s) 160, 578
BstKTI GATC 3 cut(s) 64, 750, 776
BstMAI GTCTC 2 cut(s) 211, 585
BstMBI GATC 3 cut(s) 61, 747, 773
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 6 cut(s) 659, 668, 1362, 1371, 1390, 1442
BstNI CCWGG 2 cut(s) 274, 295
BstNSI RCATGY 1 cut(s) 1393
BstPI GGTNACC 1 cut(s) 1412
BstSCI CCNGG 6 cut(s) 190, 191, 272, 293, 769, 977
BstSFI CTRYAG 3 cut(s) 171, 654, 885
BstSLI GKGCMC 1 cut(s) 1014
BstUI CGCG 2 cut(s) 160, 578
BstV1I GCAGC 5 cut(s) 317, 380, 637, 640, 1035
BsuRI GGCC 3 cut(s) 238, 782, 1428
BtgZI GCGATG 1 cut(s) 594
BtsCI GGATG 5 cut(s) 243, 424, 646, 1358, 1479
BtsIMutI CAGTG 3 cut(s) 776, 924, 1331
BveI ACCTGC 3 cut(s) 299, 878, 902
Cac8I GCNNGC 1 cut(s) 576
Cfr10I RCCGGY 1 cut(s) 1114
Cfr13I GGNCC 2 cut(s) 56, 1426
Cfr9I CCCGGG 1 cut(s) 191
CseI GACGC 1 cut(s) 567
Csp6I GTAC 3 cut(s) 915, 995, 1333
CspCI CAANNNNNGTGG 2 cut(s) 540, 575
CviAII CATG 6 cut(s) 179, 823, 1183, 1190, 1270, 1390
CviQI GTAC 3 cut(s) 915, 995, 1333
DdeI CTNAG 4 cut(s) 429, 585, 685, 731
DpnI GATC 3 cut(s) 63, 749, 775
DpnII GATC 3 cut(s) 61, 747, 773
DraI TTTAAA 1 cut(s) 1291
EaeI YGGCCR 2 cut(s) 236, 780
Eam1104I CTCTTC 4 cut(s) 91, 486, 864, 957
EarI CTCTTC 4 cut(s) 91, 486, 864, 957
Ecl136II GAGCTC 1 cut(s) 1106
Eco130I CCWWGG 2 cut(s) 565, 1043
Eco24I GRGCYC 2 cut(s) 1108, 1346
Eco47I GGWCC 1 cut(s) 56
Eco53kI GAGCTC 1 cut(s) 1106
Eco57I CTGAAG 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 1412
EcoICRI GAGCTC 1 cut(s) 1106
EcoNI CCTNNNNNAGG 1 cut(s) 909
EcoO65I GGTNACC 1 cut(s) 1412
EcoRI GAATTC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 272, 293
EcoT14I CCWWGG 2 cut(s) 565, 1043
EcoT38I GRGCYC 2 cut(s) 1108, 1346
ErhI CCWWGG 2 cut(s) 565, 1043
Esp3I CGTCTC 1 cut(s) 585
FaeI CATG 6 cut(s) 182, 826, 1186, 1193, 1273, 1393
FaqI GGGAC 3 cut(s) 481, 936, 1001
FatI CATG 6 cut(s) 178, 822, 1182, 1189, 1269, 1389
FauI CCCGC 2 cut(s) 583, 1146
Fnu4HI GCNGC 6 cut(s) 306, 369, 651, 654, 1049, 1394
FokI GGATG 4 cut(s) 230, 431, 653, 1365
FriOI GRGCYC 2 cut(s) 1108, 1346
Fsp4HI GCNGC 6 cut(s) 306, 369, 651, 654, 1049, 1394
FspBI CTAG 4 cut(s) 614, 627, 788, 1044
GluI GCNGC 6 cut(s) 306, 369, 651, 654, 1049, 1394
HaeIII GGCC 3 cut(s) 238, 782, 1428
HapII CCGG 5 cut(s) 192, 771, 978, 1115, 1148
HgaI GACGC 1 cut(s) 567
Hin1II CATG 6 cut(s) 182, 826, 1186, 1193, 1273, 1393
HinfI GANTC 3 cut(s) 253, 494, 530
HpaII CCGG 5 cut(s) 192, 771, 978, 1115, 1148
HphI GGTGA 3 cut(s) 323, 993, 1104
Hpy188I TCNGA 6 cut(s) 91, 252, 517, 535, 688, 1098
Hpy188III TCNNGA 4 cut(s) 54, 283, 751, 1261
Hpy99I CGWCG 1 cut(s) 680
HpyAV CCTTC 3 cut(s) 279, 685, 1231
HpyCH4III ACNGT 5 cut(s) 838, 919, 1169, 1326, 1412
HpyCH4IV ACGT 1 cut(s) 1037
HpyF10VI GCNNNNNNNGC 6 cut(s) 659, 668, 1362, 1371, 1390, 1442
HpyF3I CTNAG 4 cut(s) 429, 585, 685, 731
HpySE526I ACGT 1 cut(s) 1037
Hsp92II CATG 6 cut(s) 182, 826, 1186, 1193, 1273, 1393
Kzo9I GATC 3 cut(s) 61, 747, 773
LmnI GCTCC 4 cut(s) 172, 1111, 1146, 1349
Lsp1109I GCAGC 5 cut(s) 317, 380, 637, 640, 1035
LweI GCATC 3 cut(s) 526, 784, 1343
MaeI CTAG 4 cut(s) 614, 627, 788, 1044
MaeII ACGT 1 cut(s) 1037
MaeIII GTNAC 7 cut(s) 437, 734, 1038, 1244, 1358, 1406, 1412
MalI GATC 3 cut(s) 63, 749, 775
MbiI CCGCTC 1 cut(s) 1141
MboI GATC 3 cut(s) 61, 747, 773
MfeI CAATTG 1 cut(s) 474
MhlI GDGCHC 4 cut(s) 363, 1014, 1108, 1346
MlsI TGGCCA 1 cut(s) 782
MluNI TGGCCA 1 cut(s) 782
MlyI GAGTC 1 cut(s) 503
MmeI TCCRAC 2 cut(s) 1050, 1371
Mox20I TGGCCA 1 cut(s) 782
MscI TGGCCA 1 cut(s) 782
MseI TTAA 8 cut(s) 723, 762, 1254, 1290, 1338, 1368, 1461, 1469
MslI CAYNNNNRTG 1 cut(s) 1274
Msp20I TGGCCA 1 cut(s) 782
MspCI CTTAAG 1 cut(s) 1468
MspI CCGG 5 cut(s) 192, 771, 978, 1115, 1148
MspR9I CCNGG 6 cut(s) 192, 193, 274, 295, 771, 979
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 2 cut(s) 946, 1118
MvaI CCWGG 2 cut(s) 274, 295
MvnI CGCG 2 cut(s) 160, 578
MwoI GCNNNNNNNGC 6 cut(s) 659, 668, 1362, 1371, 1390, 1442
NciI CCSGG 4 cut(s) 192, 193, 771, 979
NdeII GATC 3 cut(s) 61, 747, 773
NlaIII CATG 6 cut(s) 182, 826, 1186, 1193, 1273, 1393
NlaIV GGNNCC 4 cut(s) 58, 1281, 1345, 1427
NmuCI GTSAC 2 cut(s) 437, 734
NspI RCATGY 1 cut(s) 1393
PaqCI CACCTGC 2 cut(s) 299, 878
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PctI GAATGC 2 cut(s) 946, 1118
PfeI GAWTC 2 cut(s) 253, 530
PkrI GCNGC 6 cut(s) 307, 370, 652, 655, 1050, 1395
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
Psp124BI GAGCTC 1 cut(s) 1108
Psp6I CCWGG 2 cut(s) 272, 293
PspEI GGTNACC 1 cut(s) 1412
PspGI CCWGG 2 cut(s) 272, 293
PspN4I GGNNCC 4 cut(s) 58, 1281, 1345, 1427
PspPI GGNCC 2 cut(s) 56, 1426
PstI CTGCAG 2 cut(s) 658, 889
RsaI GTAC 3 cut(s) 916, 996, 1334
RsaNI GTAC 3 cut(s) 915, 995, 1333
RseI CAYNNNNRTG 1 cut(s) 1274
SacI GAGCTC 1 cut(s) 1108
SaqAI TTAA 8 cut(s) 723, 762, 1254, 1290, 1338, 1368, 1461, 1469
SatI GCNGC 6 cut(s) 306, 369, 651, 654, 1049, 1394
Sau3AI GATC 3 cut(s) 61, 747, 773
Sau96I GGNCC 2 cut(s) 56, 1426
ScaI AGTACT 1 cut(s) 1334
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 6 cut(s) 192, 193, 274, 295, 771, 979
SduI GDGCHC 4 cut(s) 363, 1014, 1108, 1346
SfaNI GCATC 3 cut(s) 526, 784, 1343
SfcI CTRYAG 3 cut(s) 171, 654, 885
SinI GGWCC 1 cut(s) 56
SmaI CCCGGG 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 1274
SmlI CTYRAG 1 cut(s) 1468
SmoI CTYRAG 1 cut(s) 1468
SsiI CCGC 6 cut(s) 19, 416, 576, 638, 1139, 1394
SspMI CTAG 4 cut(s) 614, 627, 788, 1044
SstI GAGCTC 1 cut(s) 1108
StyD4I CCNGG 6 cut(s) 190, 191, 272, 293, 769, 977
StyI CCWWGG 2 cut(s) 565, 1043
TaaI ACNGT 5 cut(s) 838, 919, 1169, 1326, 1412
TaiI ACGT 1 cut(s) 1040
TaqI TCGA 6 cut(s) 23, 32, 330, 363, 678, 1262
TatI WGTACW 1 cut(s) 1332
TauI GCSGC 1 cut(s) 1396
TfiI GAWTC 2 cut(s) 253, 530
Tru1I TTAA 8 cut(s) 723, 762, 1254, 1290, 1338, 1368, 1461, 1469
Tru9I TTAA 8 cut(s) 723, 762, 1254, 1290, 1338, 1368, 1461, 1469
TscAI CASTG 3 cut(s) 783, 924, 1331
TseFI GTSAC 2 cut(s) 437, 734
TseI GCWGC 5 cut(s) 305, 368, 650, 653, 1048
Tsp45I GTSAC 2 cut(s) 437, 734
TspDTI ATGAA 4 cut(s) 23, 303, 953, 1286
TspGWI ACGGA 3 cut(s) 236, 1211, 1365
TspMI CCCGGG 1 cut(s) 191
TspRI CASTG 3 cut(s) 783, 924, 1331
Vha464I CTTAAG 1 cut(s) 1468
VpaK11BI GGWCC 1 cut(s) 56
XagI CCTNNNNNAGG 1 cut(s) 909
XapI RAATTY 7 cut(s) 10, 34, 502, 726, 1059, 1250, 1376
XceI RCATGY 1 cut(s) 1393
XcmI CCANNNNNNNNNTGG 1 cut(s) 1028
XmaI CCCGGG 1 cut(s) 191
XmaJI CCTAGG 1 cut(s) 1043
XspI CTAG 4 cut(s) 614, 627, 788, 1044
ZrmI AGTACT 1 cut(s) 1334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.