pycom15g23130

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015083
Physical Location & Seq
Forward (+)
17205970 .. 17210719
4750 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1284 bp
ATGGCGAAACGTTTCAATCTCCGATTCTCCCGAGTCATCACCTCCTTCCATTCCTGCCGTTCGAAAGATCCCTCCTCTCTCCCGTCAAATCCCGTCCCTTCATTCCTCCGTCCACCCCCCTTAGCCACGGCCCCGACACCACCTCTACCGTCCAAAACCCACCACCACTCCTCATCCATCAAACGCCACGTGTTATTTTGCGGCTGTAGACCCAGACCAACGCTCTCCGACGACGACCACACCAAATCATCGCCCGATCTTCATAAGTTCGAGTGGGACCGAGAGGACAAGTGGCACGTTGTCGCAAAAGTCTACGACATCACCCCCCGACGCAAAATCTACACTTCCTCCGCCTCGCCCGAATCCGACGCAAACGATGGCGCTTCACCTCCTCCCTCCTCCGCCATAGAGAAGGAACAAAAGAGGAAAACGCGACGAGTCAACAGAAAGAAGAAAAGAACGACGAGTCGCATCCGGATCAGCGCGTCCTCGTTCGAAACCGGACTTTTTAGCAGCGAAGGCGGCGGCTTCGACGATGGCGAAGAAACCGAAACCCTAGTCTCCACCAGATCATCCTCCAGAAGCTTCTCCACCGACTCTTCGCCGCCGCCAAGGCGAAGAAAAAAGAAGCGGAGCAGCAGCGCCGCCAGACACAGCCTTTCGAGGAAGTCTGCGGCAGGGGAGAGCGAAGCTGTGCCGGCAAGGCTGTCGATGTTTCAGAGGCTGATACCGTGCAGGGTGGAGGGAAAAGTGAGGGAGAGCTTCGCGGTGGTGAAGAAGTCAGAGGATCCTTACGAGGATTTTAAGAGGTCGATGATGGAGATGGTTTTGGAGAAGCAGATGTTTGAGGAGAGGGAGCTGGAGCAACTGCTGCATTGCTTTTTGTCGTTGAATTCGAAGGAGCATCATAGGGTTATTGTTGAAGCTTTCACAGAGATTTGGGAGGGTTTGTTCTGTTGTAGTGCAAGATCCTCAGGAGCTAGGGAGCGTGTATTTGAAGGAAGAGAAAAAACAAAATCAGACAAAAATACTATGGGCTACTGCATCAGTAGTCTTCTAGCTTACTCTTGTTTAGTCCTTTCTAGATTTCTTGTCCAACGTGGCCCAGGGATTAGGATACACCTGATTTTCGGGAGATTTTTTTGGGTAGGGGACTTACGAACCCCTGTGTCCAAGACACAAACAAGTGGCATCCCTTGCATTCTCCCGTGTCCCGGGCGGACAGGTTACACGACACTAGGATACATATATATGTTGTGTGTGTTGTTCAATCAAGGCCCTTGA

Protein Analysis

428

Amino Acids

48.32

Weight (kDa)

9.8

Isoelectric Point (pI)

60.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 261 - 318 1e-26 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18500
fragaria_vesca FvH4_1g13640
malus_domestica MD02G1151100.v1.1 MD15G1265600.v1.1
prunus_persica Prupe.7G152000_v2.0.a1
pyrus_communis pycom15g23130
rosa_chinensis RchiOBHm_Chr2g0101991
rosa_laevigata RLG00000017124
rosa_multiflora Rmu_co8434933.1_g000001
rosa_roxburghii Rroxscaffold_2G00140860
rosa_rugosa Rorug02G0103700
rosa_samantha Rh2AG151800 Rh2BG157200 Rh2CG157200 Rh2DG157300
rosa_wichuraiana Rw2G011850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 208, 312
AccII CGCG 3 cut(s) 433, 485, 767
AccIII TCCGGA 1 cut(s) 474
AclI AACGTT 1 cut(s) 10
AclWI GGATC 5 cut(s) 62, 485, 782, 795, 963
AcsI RAATTY 1 cut(s) 892
AcvI CACGTG 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 1214
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 5 cut(s) 16, 892, 923, 998, 1270
AjnI CCWGG 1 cut(s) 1105
AloI GAACNNNNNNTCC 2 cut(s) 935, 967
AluBI AGCT 7 cut(s) 585, 692, 762, 859, 926, 980, 1061
AluI AGCT 7 cut(s) 585, 692, 762, 859, 926, 980, 1061
Alw26I GTCTC 1 cut(s) 565
AlwI GGATC 5 cut(s) 62, 485, 782, 795, 963
AlwNI CAGNNNCTG 1 cut(s) 724
Ama87I CYCGRG 2 cut(s) 30, 1214
Aor13HI TCCGGA 1 cut(s) 474
AoxI GGCC 3 cut(s) 129, 1102, 1276
ApeKI GCWGC 4 cut(s) 513, 636, 639, 871
ApoI RAATTY 1 cut(s) 892
ArsI GACNNNNNNTTYG 2 cut(s) 543, 575
Asp700I GAANNNNTTC 1 cut(s) 11
AspLEI GCGC 3 cut(s) 383, 485, 644
AspS9I GGNCC 4 cut(s) 130, 277, 1103, 1277
AsuC2I CCSGG 2 cut(s) 1215, 1216
AsuHPI GGTGA 4 cut(s) 31, 313, 378, 784
AsuII TTCGAA 3 cut(s) 62, 495, 896
AvaI CYCGRG 2 cut(s) 30, 1214
AvaII GGWCC 1 cut(s) 277
AxyI CCTNAGG 1 cut(s) 973
BamHI GGATCC 1 cut(s) 787
BbrPI CACGTG 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 1046
BbvI GCAGC 4 cut(s) 525, 648, 651, 858
BccI CCATC 5 cut(s) 185, 371, 530, 811, 817
BceAI ACGGC 2 cut(s) 42, 144
BcgI CGANNNNNNTGC 2 cut(s) 690, 724
BciT130I CCWGG 1 cut(s) 1107
BciVI GTATCC 2 cut(s) 1110, 1235
BcnI CCSGG 2 cut(s) 1215, 1216
BcoDI GTCTC 1 cut(s) 565
BfaI CTAG 5 cut(s) 557, 981, 1058, 1083, 1238
BfmI CTRYAG 1 cut(s) 205
BfoI RGCGCY 2 cut(s) 384, 645
BfuI GTATCC 2 cut(s) 1110, 1235
BglI GCCNNNNNGGC 2 cut(s) 613, 703
Bme1390I CCNGG 3 cut(s) 1107, 1215, 1216
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 2 cut(s) 30, 1214
BmgT120I GGNCC 4 cut(s) 130, 277, 1103, 1277
BmiI GGNNCC 3 cut(s) 132, 278, 789
BmrFI CCNGG 3 cut(s) 1107, 1215, 1216
BmsI GCATC 4 cut(s) 480, 913, 1053, 1200
BpiI GAAGAC 1 cut(s) 1046
BpmI CTGGAG 2 cut(s) 562, 881
Bpu10I CCTNAGC 1 cut(s) 121
Bpu14I TTCGAA 3 cut(s) 62, 495, 896
BpuMI CCSGG 2 cut(s) 1215, 1216
BsaAI YACGTR 1 cut(s) 190
BsaJI CCNNGG 5 cut(s) 126, 611, 1105, 1106, 1214
BsaWI WCCGGW 2 cut(s) 474, 500
BsaXI ACNNNNNCTCC 6 cut(s) 152, 182, 332, 362, 935, 965
Bsc4I CCNNNNNNNGG 1 cut(s) 1214
Bse118I RCCGGY 1 cut(s) 697
Bse21I CCTNAGG 1 cut(s) 973
Bse3DI GCAATG 1 cut(s) 874
BseAI TCCGGA 1 cut(s) 474
BseBI CCWGG 1 cut(s) 1107
BseDI CCNNGG 5 cut(s) 126, 611, 1105, 1106, 1214
BseGI GGATG 4 cut(s) 173, 471, 572, 1191
BseLI CCNNNNNNNGG 1 cut(s) 1214
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 1 cut(s) 987
BseRI GAGGAG 5 cut(s) 64, 160, 381, 388, 863
BseXI GCAGC 4 cut(s) 525, 648, 651, 858
BsgI GTGCAG 1 cut(s) 754
Bsh1236I CGCG 3 cut(s) 433, 485, 767
BshFI GGCC 3 cut(s) 131, 1104, 1278
BsiHKCI CYCGRG 2 cut(s) 30, 1214
BsiSI CCGG 4 cut(s) 475, 501, 698, 1215
BslFI GGGAC 4 cut(s) 80, 290, 1166, 1197
BslI CCNNNNNNNGG 1 cut(s) 1214
BsmAI GTCTC 1 cut(s) 565
BsmFI GGGAC 4 cut(s) 80, 290, 1166, 1197
BsmI GAATGC 1 cut(s) 1200
BsnI GGCC 3 cut(s) 131, 1104, 1278
BsoBI CYCGRG 2 cut(s) 30, 1214
Bsp119I TTCGAA 3 cut(s) 62, 495, 896
Bsp13I TCCGGA 1 cut(s) 474
Bsp143I GATC 6 cut(s) 67, 256, 477, 569, 787, 968
BspANI GGCC 3 cut(s) 131, 1104, 1278
BspCNI CTCAG 1 cut(s) 986
BspEI TCCGGA 1 cut(s) 474
BspFNI CGCG 3 cut(s) 433, 485, 767
BspLI GGNNCC 3 cut(s) 132, 278, 789
BspPI GGATC 5 cut(s) 62, 485, 782, 795, 963
BspT104I TTCGAA 3 cut(s) 62, 495, 896
BsrDI GCAATG 1 cut(s) 874
BsrFI RCCGGY 1 cut(s) 697
BssAI RCCGGY 1 cut(s) 697
BssECI CCNNGG 5 cut(s) 126, 611, 1105, 1106, 1214
BssMI GATC 6 cut(s) 67, 256, 477, 569, 787, 968
BssT1I CCWWGG 1 cut(s) 611
Bst2UI CCWGG 1 cut(s) 1107
Bst4CI ACNGT 2 cut(s) 150, 732
Bst6I CTCTTC 2 cut(s) 604, 997
BstAPI GCANNNNNTGC 2 cut(s) 871, 1197
BstBAI YACGTR 1 cut(s) 190
BstBI TTCGAA 3 cut(s) 62, 495, 896
BstC8I GCNNGC 1 cut(s) 699
BstDEI CTNAG 2 cut(s) 121, 973
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 4 cut(s) 173, 471, 572, 1191
BstFNI CGCG 3 cut(s) 433, 485, 767
BstH2I RGCGCY 2 cut(s) 384, 645
BstHHI GCGC 3 cut(s) 383, 485, 644
BstKTI GATC 6 cut(s) 70, 259, 480, 572, 790, 971
BstMAI GTCTC 1 cut(s) 565
BstMBI GATC 6 cut(s) 67, 256, 477, 569, 787, 968
BstMWI GCNNNNNNNGC 7 cut(s) 519, 522, 613, 698, 703, 871, 1197
BstNI CCWGG 1 cut(s) 1107
BstSCI CCNGG 3 cut(s) 1105, 1213, 1214
BstSFI CTRYAG 1 cut(s) 205
BstUI CGCG 3 cut(s) 433, 485, 767
BstV1I GCAGC 4 cut(s) 525, 648, 651, 858
BstV2I GAAGAC 1 cut(s) 1046
BstX2I RGATCY 3 cut(s) 67, 787, 968
BstYI RGATCY 3 cut(s) 67, 787, 968
Bsu36I CCTNAGG 1 cut(s) 973
BsuI GTATCC 2 cut(s) 1110, 1235
BsuRI GGCC 3 cut(s) 131, 1104, 1278
BtgI CCRYGG 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 234
BtsCI GGATG 4 cut(s) 173, 471, 572, 1191
Cac8I GCNNGC 1 cut(s) 699
CaiI CAGNNNCTG 1 cut(s) 724
CfoI GCGC 3 cut(s) 383, 485, 644
Cfr10I RCCGGY 1 cut(s) 697
Cfr13I GGNCC 4 cut(s) 130, 277, 1103, 1277
Cfr9I CCCGGG 1 cut(s) 1214
CseI GACGC 3 cut(s) 339, 377, 474
DdeI CTNAG 2 cut(s) 121, 973
DpnI GATC 6 cut(s) 69, 258, 479, 571, 789, 970
DpnII GATC 6 cut(s) 67, 256, 477, 569, 787, 968
Eam1104I CTCTTC 2 cut(s) 604, 997
EarI CTCTTC 2 cut(s) 604, 997
EciI GGCGGA 3 cut(s) 340, 391, 1234
Eco130I CCWWGG 1 cut(s) 611
Eco47I GGWCC 1 cut(s) 277
Eco72I CACGTG 1 cut(s) 190
Eco81I CCTNAGG 1 cut(s) 973
Eco88I CYCGRG 2 cut(s) 30, 1214
EcoO109I RGGNCCY 1 cut(s) 1277
EcoRI GAATTC 1 cut(s) 892
EcoRII CCWGG 1 cut(s) 1105
EcoT14I CCWWGG 1 cut(s) 611
ErhI CCWWGG 1 cut(s) 611
FaiI YATR 8 cut(s) 264, 407, 909, 1034, 1247, 1249, 1251, 1253
FaqI GGGAC 4 cut(s) 80, 290, 1166, 1197
FblI GTMKAC 2 cut(s) 208, 312
FokI GGATG 4 cut(s) 160, 458, 559, 1178
FspBI CTAG 5 cut(s) 557, 981, 1058, 1083, 1238
GlaI GCGC 3 cut(s) 382, 484, 643
GsuI CTGGAG 2 cut(s) 562, 881
HaeII RGCGCY 2 cut(s) 384, 645
HaeIII GGCC 3 cut(s) 131, 1104, 1278
HapII CCGG 4 cut(s) 475, 501, 698, 1215
HgaI GACGC 3 cut(s) 339, 377, 474
HhaI GCGC 3 cut(s) 383, 485, 644
Hin6I GCGC 3 cut(s) 381, 483, 642
HinP1I GCGC 3 cut(s) 381, 483, 642
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 2 cut(s) 583, 924
HinfI GANTC 6 cut(s) 24, 33, 362, 438, 466, 596
HpaII CCGG 4 cut(s) 475, 501, 698, 1215
HphI GGTGA 4 cut(s) 31, 313, 378, 784
Hpy166II GTNNAC 4 cut(s) 113, 209, 313, 442
Hpy188I TCNGA 6 cut(s) 23, 229, 367, 720, 784, 1021
Hpy188III TCNNGA 6 cut(s) 30, 475, 579, 975, 1083, 1132
Hpy8I GTNNAC 4 cut(s) 113, 209, 313, 442
Hpy99I CGWCG 7 cut(s) 233, 236, 333, 371, 438, 466, 536
HpyAV CCTTC 6 cut(s) 55, 108, 406, 512, 892, 992
HpyCH4III ACNGT 2 cut(s) 150, 732
HpyCH4IV ACGT 4 cut(s) 10, 189, 297, 1099
HpyCH4V TGCA 5 cut(s) 735, 874, 965, 1044, 1200
HpyF10VI GCNNNNNNNGC 7 cut(s) 519, 522, 613, 698, 703, 871, 1197
HpyF3I CTNAG 2 cut(s) 121, 973
HpySE526I ACGT 4 cut(s) 10, 189, 297, 1099
HspAI GCGC 3 cut(s) 381, 483, 642
Kpn2I TCCGGA 1 cut(s) 474
KroI GCCGGC 1 cut(s) 697
KroNI GCCGGC 1 cut(s) 699
Kzo9I GATC 6 cut(s) 67, 256, 477, 569, 787, 968
LmnI GCTCC 6 cut(s) 633, 856, 862, 901, 977, 985
Lsp1109I GCAGC 4 cut(s) 525, 648, 651, 858
LweI GCATC 4 cut(s) 480, 913, 1053, 1200
MaeI CTAG 5 cut(s) 557, 981, 1058, 1083, 1238
MaeII ACGT 4 cut(s) 10, 189, 297, 1099
MaeIII GTNAC 1 cut(s) 1226
MalI GATC 6 cut(s) 69, 258, 479, 571, 789, 970
MboI GATC 6 cut(s) 67, 256, 477, 569, 787, 968
MboII GAAGA 8 cut(s) 251, 463, 554, 591, 630, 787, 1014, 1046
MflI RGATCY 3 cut(s) 67, 787, 968
MluCI AATT 1 cut(s) 892
MlyI GAGTC 4 cut(s) 42, 447, 475, 590
MmeI TCCRAC 3 cut(s) 252, 390, 1120
MroI TCCGGA 1 cut(s) 474
MroNI GCCGGC 1 cut(s) 697
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 1 cut(s) 804
MslI CAYNNNNRTG 1 cut(s) 1250
MspI CCGG 4 cut(s) 475, 501, 698, 1215
MspR9I CCNGG 3 cut(s) 1107, 1215, 1216
Mva1269I GAATGC 1 cut(s) 1200
MvaI CCWGG 1 cut(s) 1107
MvnI CGCG 3 cut(s) 433, 485, 767
MwoI GCNNNNNNNGC 7 cut(s) 519, 522, 613, 698, 703, 871, 1197
NaeI GCCGGC 1 cut(s) 699
NciI CCSGG 2 cut(s) 1215, 1216
NdeII GATC 6 cut(s) 67, 256, 477, 569, 787, 968
NgoMIV GCCGGC 1 cut(s) 697
NlaIV GGNNCC 3 cut(s) 132, 278, 789
NspV TTCGAA 3 cut(s) 62, 495, 896
PasI CCCWGGG 1 cut(s) 1106
PcsI WCGNNNNNNNCGW 2 cut(s) 537, 893
PctI GAATGC 1 cut(s) 1200
PdiI GCCGGC 1 cut(s) 699
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 2 cut(s) 24, 362
PleI GAGTC 4 cut(s) 41, 446, 474, 590
PmaCI CACGTG 1 cut(s) 190
PmlI CACGTG 1 cut(s) 190
PpsI GAGTC 4 cut(s) 41, 446, 474, 590
Ppu21I YACGTR 1 cut(s) 190
Psp1406I AACGTT 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 1105
PspCI CACGTG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 1105
PspN4I GGNNCC 3 cut(s) 132, 278, 789
PspPI GGNCC 4 cut(s) 130, 277, 1103, 1277
PstNI CAGNNNCTG 1 cut(s) 724
PsuI RGATCY 3 cut(s) 67, 787, 968
RseI CAYNNNNRTG 1 cut(s) 1250
SaqAI TTAA 1 cut(s) 804
Sau3AI GATC 6 cut(s) 67, 256, 477, 569, 787, 968
Sau96I GGNCC 4 cut(s) 130, 277, 1103, 1277
SchI GAGTC 4 cut(s) 42, 447, 475, 590
ScrFI CCNGG 3 cut(s) 1107, 1215, 1216
SfaNI GCATC 4 cut(s) 480, 913, 1053, 1200
SfcI CTRYAG 1 cut(s) 205
SfuI TTCGAA 3 cut(s) 62, 495, 896
SinI GGWCC 1 cut(s) 277
SmaI CCCGGG 1 cut(s) 1216
SmiMI CAYNNNNRTG 1 cut(s) 1250
Sse9I AATT 1 cut(s) 892
SspMI CTAG 5 cut(s) 557, 981, 1058, 1083, 1238
StyD4I CCNGG 3 cut(s) 1105, 1213, 1214
StyI CCWWGG 1 cut(s) 611
TaaI ACNGT 2 cut(s) 150, 732
TaiI ACGT 4 cut(s) 13, 192, 300, 1102
TaqI TCGA 8 cut(s) 62, 270, 495, 531, 662, 710, 812, 896
TaqII GACCGA 1 cut(s) 294
TasI AATT 1 cut(s) 892
TauI GCSGC 7 cut(s) 204, 525, 528, 607, 610, 647, 677
TfiI GAWTC 2 cut(s) 24, 362
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TseI GCWGC 4 cut(s) 513, 636, 639, 871
TspDTI ATGAA 2 cut(s) 90, 251
TspGWI ACGGA 1 cut(s) 98
TspMI CCCGGG 1 cut(s) 1214
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 1 cut(s) 892
XbaI TCTAGA 1 cut(s) 1082
XmaI CCCGGG 1 cut(s) 1214
XmiI GTMKAC 2 cut(s) 208, 312
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 5 cut(s) 557, 981, 1058, 1083, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.