Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013883

Physical Location & Seq

Genomic Coordinates Reverse (-)

17365766 .. 17367475

Gene Structure 1710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGACAGGCGGTGGTTCATCGGGGAGGTTACCAACATGGAAAGAGAGAGAGAACAATAAGAGGAGAGAGAGGAGGAGAAGAGCCATTGCTGCTAAGATATATTCTGGTCTCAGAGCTCAGGGAAGCTACAAGCTTCCCAAGCACTGTGATAACAACGAGGTCTTGAAAGCTCTCTGTGCTGAAGCTGGCTGGGTTGTGGAAGAGGATGGCACCACCTACCGCAAGGGATGCAAGCCATCTCCAATGGAAATTGCAGGCGCCCCAACAAATATGAGTGCATGTTCCTCTATTCAACAAAGCCCACAATCCTCAGCTTTCCCAAGTCCTGTGCCATCTTACCATGCCAGTCCATCCTCCTCCTCTTTCCCAAGTCCTACTCGTTTTGATGGAAACCCCTCTTACCTTCTTCCGTTCCTGCGTAACATAGCTTCCATTCCCACAAATCTTCCTCCTCTTAGAATATCCAATAGTGCTCCTGTAACTCCACCTCTTTCTTCTCCAACCTCAAGAGGTTCAAAGCGAAAACCTGATTGGGACTCCCTTACTAATGGCTGCATAAACTCCCTGCGCCACCCTCTTTTCGCAGCCTCTGCCCCTTCAAGTCCTACACGTCGACACCATCTTACACCTGCCACAATACCAGAATGTGATGAGTCTGATGCTTCCACTGTGGACTCTGGGCGTTGGGTCAGTTTTCAGACAGGGGCACCCTCAGTTGCTCCGCCTTCGCCCACATTTAATCTTATGAAACCAGTGGCTGAGCAGAATGTTCTGCAGAATGCTGTTGAAGCCCATGTGGGGATGGGATGGGCAAGCACTGCAGAGAGGGGACGAGGCTCGGATTTTGAGTTTGAGAGTGGCACACTGAAAGCTTGGGAGGGTGAGAGAATACATGAGGTAGGAGCGGATGATCTGGATCTCACACTTGGCAATGGGAAGAACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009741 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

BES1_N

Protein Analysis

316

Amino Acids

33.93

Weight (kDa)

8.9

Isoelectric Point (pI)

69.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BES1_N	PF05687	6 - 130	4.5e-65	BES1/BZR1 plant transcription factor, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36780
fragaria_vesca	FvH4_1g14040
malus_domestica	MD15G1267600.v1.1 MD15G1267800.v1.1
prunus_persica	Prupe.7G149000_v2.0.a1
pyrus_communis	pycom02g12160 pycom15g23310
rosa_chinensis	RchiOBHm_Chr2g0102631
rosa_laevigata	RLG00000017158
rosa_multiflora	Rmu_sc0003852.1_g000007
rosa_roxburghii	Rroxscaffold_2G00140430
rosa_rugosa	Rorug02G0108300
rosa_samantha	Rh2AG157000 Rh2BG163300 Rh2CG162400 Rh2DG162200
rosa_wichuraiana	Rw2G012180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	637
Acc36I	ACCTGC	1 cut(s)	637
AccB1I	GGYRCC	3 cut(s)	209, 257, 706
AccBSI	CCGCTC	1 cut(s)	905
AccI	GTMKAC	1 cut(s)	613
AciI	CCGC	4 cut(s)	9, 220, 722, 905
AclWI	GGATC	1 cut(s)	924
AcuI	CTGAAG	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	798
AflIII	ACRYGT	1 cut(s)	608
AgsI	TTSAA	5 cut(s)	166, 293, 516, 600, 788
AjiI	CACGTC	1 cut(s)	611
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
AluBI	AGCT	8 cut(s)	116, 126, 133, 170, 185, 314, 428, 872
AluI	AGCT	8 cut(s)	116, 126, 133, 170, 185, 314, 428, 872
Alw21I	GWGCWC	2 cut(s)	118, 475
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	924
AlwNI	CAGNNNCTG	2 cut(s)	590, 758
ApeKI	GCWGC	3 cut(s)	89, 552, 584
AspLEI	GCGC	2 cut(s)	260, 570
AsuHPI	GGTGA	1 cut(s)	893
BaeGI	GKGCMC	1 cut(s)	709
BanI	GGYRCC	3 cut(s)	209, 257, 706
BanII	GRGCYC	1 cut(s)	118
BarI	GAAGNNNNNNTAC	2 cut(s)	412, 444
Bbv12I	GWGCWC	2 cut(s)	118, 475
BbvCI	CCTCAGC	1 cut(s)	310
BbvI	GCAGC	3 cut(s)	76, 539, 596
BccI	CCATC	8 cut(s)	200, 244, 340, 358, 380, 627, 796, 801
BcoDI	GTCTC	1 cut(s)	113
BfmI	CTRYAG	2 cut(s)	773, 819
BfoI	RGCGCY	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	637
BisI	GCNGC	3 cut(s)	90, 553, 585
BlpI	GCTNAGC	1 cut(s)	759
BlsI	GCNGC	3 cut(s)	91, 554, 586
BmgBI	CACGTC	1 cut(s)	611
BmiI	GGNNCC	3 cut(s)	211, 259, 708
BmsI	GCATC	2 cut(s)	218, 649
Bpu10I	CCTNAGC	2 cut(s)	117, 310
Bpu1102I	GCTNAGC	1 cut(s)	759
BpuEI	CTTGAG	1 cut(s)	490
BsaBI	GATNNNNATC	1 cut(s)	915
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	798
Bse1I	ACTGG	2 cut(s)	345, 752
Bse3DI	GCAATG	2 cut(s)	84, 937
Bse8I	GATNNNNATC	1 cut(s)	915
BseGI	GGATG	6 cut(s)	211, 233, 350, 807, 812, 913
BseJI	GATNNNNATC	1 cut(s)	915
BseLI	CCNNNNNNNGG	1 cut(s)	798
BseMI	GCAATG	2 cut(s)	84, 937
BseMII	CTCAG	5 cut(s)	124, 131, 324, 726, 750
BseNI	ACTGG	2 cut(s)	345, 752
BseRI	GAGGAG	6 cut(s)	76, 85, 88, 346, 349, 441
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	3 cut(s)	76, 539, 596
BseYI	CCCAGC	1 cut(s)	189
BshNI	GGYRCC	3 cut(s)	209, 257, 706
BsiHKAI	GWGCWC	2 cut(s)	118, 475
BslFI	GGGAC	2 cut(s)	548, 843
BslI	CCNNNNNNNGG	1 cut(s)	798
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	548, 843
BsmI	GAATGC	1 cut(s)	784
Bso31I	GGTCTC	1 cut(s)	113
Bsp1286I	GDGCHC	3 cut(s)	118, 475, 709
Bsp143I	GATC	2 cut(s)	910, 916
Bsp1720I	GCTNAGC	1 cut(s)	759
BspACI	CCGC	4 cut(s)	9, 220, 722, 905
BspCNI	CTCAG	5 cut(s)	123, 130, 323, 725, 751
BspLI	GGNNCC	3 cut(s)	211, 259, 708
BspMAI	CTGCAG	2 cut(s)	777, 823
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	1 cut(s)	924
BspQI	GCTCTTC	1 cut(s)	73
BspT107I	GGYRCC	3 cut(s)	209, 257, 706
BspTNI	GGTCTC	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	905
BsrDI	GCAATG	2 cut(s)	84, 937
BsrI	ACTGG	2 cut(s)	345, 752
BssMI	GATC	2 cut(s)	910, 916
BssNI	GRCGYC	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	146, 670
Bst6I	CTCTTC	2 cut(s)	73, 195
BstACI	GRCGYC	1 cut(s)	258
BstAPI	GCANNNNNTGC	3 cut(s)	228, 590, 818
BstC8I	GCNNGC	4 cut(s)	187, 233, 256, 814
BstDEI	CTNAG	7 cut(s)	93, 110, 117, 310, 455, 712, 759
BstEII	GGTNACC	1 cut(s)	27
BstF5I	GGATG	6 cut(s)	211, 233, 350, 807, 812, 913
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	260, 570
BstKTI	GATC	2 cut(s)	913, 919
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	2 cut(s)	910, 916
BstMWI	GCNNNNNNNGC	7 cut(s)	89, 139, 176, 228, 590, 788, 818
BstNSI	RCATGY	1 cut(s)	282
BstPI	GGTNACC	1 cut(s)	27
BstSFI	CTRYAG	2 cut(s)	773, 819
BstSLI	GKGCMC	1 cut(s)	709
BstV1I	GCAGC	3 cut(s)	76, 539, 596
BstX2I	RGATCY	1 cut(s)	916
BstYI	RGATCY	1 cut(s)	916
BtrI	CACGTC	1 cut(s)	611
BtsCI	GGATG	6 cut(s)	211, 233, 350, 807, 812, 913
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	5 cut(s)	142, 666, 759, 816, 863
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	4 cut(s)	187, 233, 256, 814
CaiI	CAGNNNCTG	2 cut(s)	590, 758
CfoI	GCGC	2 cut(s)	260, 570
CviAII	CATG	5 cut(s)	36, 279, 341, 794, 893
DdeI	CTNAG	7 cut(s)	93, 110, 117, 310, 455, 712, 759
DinI	GGCGCC	1 cut(s)	259
DpnI	GATC	2 cut(s)	912, 918
DpnII	GATC	2 cut(s)	910, 916
Eam1104I	CTCTTC	2 cut(s)	73, 195
EarI	CTCTTC	2 cut(s)	73, 195
EciI	GGCGGA	1 cut(s)	711
Ecl136II	GAGCTC	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	201
Eco91I	GGTNACC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	116
EcoO65I	GGTNACC	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	118
EgeI	GGCGCC	1 cut(s)	259
EheI	GGCGCC	1 cut(s)	259
FaeI	CATG	5 cut(s)	39, 282, 344, 797, 896
FaqI	GGGAC	2 cut(s)	548, 843
FatI	CATG	5 cut(s)	35, 278, 340, 793, 892
FblI	GTMKAC	1 cut(s)	613
Fnu4HI	GCNGC	3 cut(s)	90, 553, 585
FokI	GGATG	6 cut(s)	218, 240, 337, 814, 819, 920
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	3 cut(s)	90, 553, 585
GlaI	GCGC	2 cut(s)	259, 569
GluI	GCNGC	3 cut(s)	90, 553, 585
GsaI	CCCAGC	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	261
HhaI	GCGC	2 cut(s)	260, 570
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	5 cut(s)	39, 282, 344, 797, 896
Hin6I	GCGC	2 cut(s)	258, 568
HinP1I	GCGC	2 cut(s)	258, 568
HincII	GTYRAC	1 cut(s)	614
HindII	GTYRAC	1 cut(s)	614
HindIII	AAGCTT	2 cut(s)	131, 870
HinfI	GANTC	3 cut(s)	536, 653, 674
HphI	GGTGA	1 cut(s)	893
Hpy166II	GTNNAC	2 cut(s)	614, 673
Hpy188I	TCNGA	4 cut(s)	113, 658, 699, 841
Hpy188III	TCNNGA	3 cut(s)	163, 507, 914
Hpy8I	GTNNAC	2 cut(s)	614, 673
Hpy99I	CGWCG	1 cut(s)	615
HpyAV	CCTTC	3 cut(s)	413, 606, 735
HpyCH4III	ACNGT	2 cut(s)	146, 670
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	6 cut(s)	231, 254, 278, 555, 775, 821
HpyF10VI	GCNNNNNNNGC	7 cut(s)	89, 139, 176, 228, 590, 788, 818
HpyF3I	CTNAG	7 cut(s)	93, 110, 117, 310, 455, 712, 759
HpySE526I	ACGT	1 cut(s)	610
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	5 cut(s)	39, 282, 344, 797, 896
HspAI	GCGC	2 cut(s)	258, 568
KasI	GGCGCC	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	910, 916
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	3 cut(s)	478, 724, 902
Lsp1109I	GCAGC	3 cut(s)	76, 539, 596
LweI	GCATC	2 cut(s)	218, 649
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	3 cut(s)	27, 419, 478
MalI	GATC	2 cut(s)	912, 918
MbiI	CCGCTC	1 cut(s)	905
MboI	GATC	2 cut(s)	910, 916
MboII	GAAGA	5 cut(s)	90, 212, 398, 437, 486
MflI	RGATCY	1 cut(s)	916
MhlI	GDGCHC	3 cut(s)	118, 475, 709
MluCI	AATT	1 cut(s)	249
Mly113I	GGCGCC	1 cut(s)	258
MlyI	GAGTC	3 cut(s)	530, 662, 668
MmeI	TCCRAC	1 cut(s)	524
MseI	TTAA	2 cut(s)	738, 946
Mva1269I	GAATGC	1 cut(s)	784
MwoI	GCNNNNNNNGC	7 cut(s)	89, 139, 176, 228, 590, 788, 818
NarI	GGCGCC	1 cut(s)	258
NdeII	GATC	2 cut(s)	910, 916
NlaIII	CATG	5 cut(s)	39, 282, 344, 797, 896
NlaIV	GGNNCC	3 cut(s)	211, 259, 708
NspI	RCATGY	1 cut(s)	282
PaqCI	CACCTGC	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	73
PctI	GAATGC	1 cut(s)	784
PkrI	GCNGC	3 cut(s)	91, 554, 586
PleI	GAGTC	3 cut(s)	530, 661, 668
PluTI	GGCGCC	1 cut(s)	261
PpsI	GAGTC	3 cut(s)	530, 661, 668
Psp124BI	GAGCTC	1 cut(s)	118
PspEI	GGTNACC	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	3 cut(s)	211, 259, 708
PstI	CTGCAG	2 cut(s)	777, 823
PstNI	CAGNNNCTG	2 cut(s)	590, 758
PsuI	RGATCY	1 cut(s)	916
SacI	GAGCTC	1 cut(s)	118
SalI	GTCGAC	1 cut(s)	612
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	738, 946
SatI	GCNGC	3 cut(s)	90, 553, 585
Sau3AI	GATC	2 cut(s)	910, 916
SchI	GAGTC	3 cut(s)	530, 662, 668
SduI	GDGCHC	3 cut(s)	118, 475, 709
SfaNI	GCATC	2 cut(s)	218, 649
SfcI	CTRYAG	2 cut(s)	773, 819
SfoI	GGCGCC	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	505
SmoI	CTYRAG	1 cut(s)	505
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	4 cut(s)	9, 220, 722, 905
SspDI	GGCGCC	1 cut(s)	257
SstI	GAGCTC	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	146, 670
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	1 cut(s)	613
TasI	AATT	1 cut(s)	249
Tru1I	TTAA	2 cut(s)	738, 946
Tru9I	TTAA	2 cut(s)	738, 946
TscAI	CASTG	5 cut(s)	149, 673, 759, 823, 870
TseI	GCWGC	3 cut(s)	89, 552, 584
TspDTI	ATGAA	2 cut(s)	6, 761
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	5 cut(s)	149, 673, 759, 823, 870
XceI	RCATGY	1 cut(s)	282
XmiI	GTMKAC	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.