pycom15g24140

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017558
Physical Location & Seq
Forward (+)
18315630 .. 18318298
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g24140.1

Sequence Viewer

Length: 477 bp
ATGGTTGTTGCTGTGAAAAGGATTGACCAAGAATATCTGTGGGGGGATCACAGAGAATTGTTGGCGGAAATCAGCTACCATGGGCAGCTGCATCATGAAAATCTTGTGAGGTTGATTGGTTACTGCTTAGAGGATGACCACCGACTTTTGGTGTATGAATATATACCTTGCGGAAGCTTGGATAGACATCTATTTAGCAAGTCTTCTTCCTCTCAACCACTTCCGTGGAACCTTCGTATGAGGATTGCCCTTGGTGCTGCTAAGGGTCTAGCATTTCTTCACAGTGCTGAGAGGAGAGTGATGTTTCGTCACTTCAAAACTTCTGATATCCTGCTGGATTCGATGAACAATGCTAAACTTACAGATTTTGGTCTGGCCAGGGGTTGGCCAGCCGGTGATAAAACCCATGTCTCAACAAACGGGTATGCAGCTCCTGAATATATAGCCACAGTGTTGTTTTTTAACTGCCAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

159

Amino Acids

18.1

Weight (kDa)

7.81

Isoelectric Point (pI)

30.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 149 5.2e-27 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 2 - 149 3e-23 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07570
fragaria_vesca FvH4_3g36200 FvH4_3g36200 FvH4_3g36200
pyrus_communis pycom15g24140
rosa_chinensis RchiOBHm_Chr1g0367651
rosa_multiflora Rmu_co8297867.1_g000001
rosa_roxburghii Rroxscaffold_2G00138910
rosa_samantha Rh1AG343000 Rh1CG320100 Rh1DG336400 Rh5DG453400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 384
AciI CCGC 2 cut(s) 65, 171
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 2 cut(s) 375, 386
AfiI CCNNNNNNNGG 2 cut(s) 148, 384
AgsI TTSAA 1 cut(s) 316
AjnI CCWGG 1 cut(s) 377
AleI CACNNNNGTG 1 cut(s) 223
AluBI AGCT 4 cut(s) 75, 88, 177, 431
AluI AGCT 4 cut(s) 75, 88, 177, 431
Alw26I GTCTC 1 cut(s) 415
AlwI GGATC 1 cut(s) 54
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 2 cut(s) 375, 386
ApeKI GCWGC 4 cut(s) 85, 88, 257, 428
AsuHPI GGTGA 1 cut(s) 407
BalI TGGCCA 2 cut(s) 377, 388
BbsI GAAGAC 1 cut(s) 195
BbvI GCAGC 4 cut(s) 75, 97, 244, 440
BciT130I CCWGG 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 415
BfaI CTAG 1 cut(s) 269
BisI GCNGC 4 cut(s) 86, 89, 258, 429
BlsI GCNGC 4 cut(s) 87, 90, 259, 430
Bme1390I CCNGG 1 cut(s) 379
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 379
BmsI GCATC 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 186
BsaJI CCNNGG 4 cut(s) 79, 224, 250, 378
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 384
Bse118I RCCGGY 1 cut(s) 392
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 4 cut(s) 79, 224, 250, 378
BseGI GGATG 1 cut(s) 139
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 148, 384
BseMII CTCAG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 4 cut(s) 75, 97, 244, 440
BshFI GGCC 2 cut(s) 377, 388
BsiSI CCGG 1 cut(s) 393
BslI CCNNNNNNNGG 2 cut(s) 148, 384
BsmAI GTCTC 1 cut(s) 415
BsnI GGCC 2 cut(s) 377, 388
Bsp143I GATC 1 cut(s) 46
Bsp19I CCATGG 1 cut(s) 79
BspACI CCGC 2 cut(s) 65, 171
BspANI GGCC 2 cut(s) 377, 388
BspCNI CTCAG 1 cut(s) 280
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 230
BspPI GGATC 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 392
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 4 cut(s) 79, 224, 250, 378
BssMI GATC 1 cut(s) 46
BssT1I CCWWGG 2 cut(s) 79, 250
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 2 cut(s) 284, 451
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 3 cut(s) 127, 261, 288
BstDSI CCRYGG 2 cut(s) 79, 224
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 377
BstV1I GCAGC 4 cut(s) 75, 97, 244, 440
BstV2I GAAGAC 1 cut(s) 195
BstXI CCANNNNNNTGG 1 cut(s) 225
BsuRI GGCC 2 cut(s) 377, 388
BtgI CCRYGG 2 cut(s) 79, 224
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 289, 456
Cac8I GCNNGC 1 cut(s) 390
CaiI CAGNNNCTG 1 cut(s) 434
CciI TCATGA 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 392
CviAII CATG 3 cut(s) 80, 95, 407
CviJI RGCY 8 cut(s) 75, 88, 177, 377, 388, 392, 431, 446
CviKI_1 RGCY 8 cut(s) 75, 88, 177, 377, 388, 392, 431, 446
DdeI CTNAG 3 cut(s) 127, 261, 288
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EaeI YGGCCR 2 cut(s) 375, 386
EciI GGCGGA 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 79, 250
Eco32I GATATC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 377
EcoRV GATATC 1 cut(s) 328
EcoT14I CCWWGG 2 cut(s) 79, 250
ErhI CCWWGG 2 cut(s) 79, 250
FaeI CATG 3 cut(s) 83, 98, 410
FatI CATG 3 cut(s) 79, 94, 406
Fnu4HI GCNGC 4 cut(s) 86, 89, 258, 429
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 4 cut(s) 86, 89, 258, 429
FspBI CTAG 1 cut(s) 269
GluI GCNGC 4 cut(s) 86, 89, 258, 429
HaeIII GGCC 2 cut(s) 377, 388
HapII CCGG 1 cut(s) 393
Hin1II CATG 3 cut(s) 83, 98, 410
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 1 cut(s) 338
HpaII CCGG 1 cut(s) 393
HphI GGTGA 1 cut(s) 407
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 2 cut(s) 95, 434
HpyAV CCTTC 1 cut(s) 242
HpyCH4III ACNGT 2 cut(s) 284, 451
HpyCH4V TGCA 2 cut(s) 91, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 3 cut(s) 127, 261, 288
Hsp92II CATG 3 cut(s) 83, 98, 410
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 8 cut(s) 320, 344, 359, 364, 391, 402, 406, 447
Lsp1109I GCAGC 4 cut(s) 75, 97, 244, 440
LweI GCATC 1 cut(s) 100
MaeI CTAG 1 cut(s) 269
MaeIII GTNAC 2 cut(s) 119, 308
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 3 cut(s) 195, 198, 269
MlsI TGGCCA 2 cut(s) 377, 388
MluCI AATT 1 cut(s) 56
MluNI TGGCCA 2 cut(s) 377, 388
MnlI CCTC 5 cut(s) 102, 124, 220, 234, 285
Mox20I TGGCCA 2 cut(s) 377, 388
MscI TGGCCA 2 cut(s) 377, 388
MseI TTAA 1 cut(s) 462
MslI CAYNNNNRTG 1 cut(s) 223
Msp20I TGGCCA 2 cut(s) 377, 388
MspA1I CMGCKG 1 cut(s) 88
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 1 cut(s) 379
MvaI CCWGG 1 cut(s) 379
MwoI GCNNNNNNNGC 1 cut(s) 254
NcoI CCATGG 1 cut(s) 79
NdeII GATC 1 cut(s) 46
NlaIII CATG 3 cut(s) 83, 98, 410
NlaIV GGNNCC 1 cut(s) 230
NmuCI GTSAC 1 cut(s) 308
OliI CACNNNNGTG 1 cut(s) 223
PagI TCATGA 1 cut(s) 94
PfeI GAWTC 1 cut(s) 338
PflMI CCANNNNNTGG 1 cut(s) 384
PkrI GCNGC 4 cut(s) 87, 90, 259, 430
Psp6I CCWGG 1 cut(s) 377
PspGI CCWGG 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 230
PstNI CAGNNNCTG 1 cut(s) 434
PvuII CAGCTG 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 223
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 4 cut(s) 86, 89, 258, 429
Sau3AI GATC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 379
SetI ASST 7 cut(s) 77, 90, 113, 169, 179, 234, 433
SfaNI GCATC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 223
Sse9I AATT 1 cut(s) 56
SsiI CCGC 2 cut(s) 65, 171
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 377
StyI CCWWGG 2 cut(s) 79, 250
TaaI ACNGT 2 cut(s) 284, 451
TaqI TCGA 1 cut(s) 341
TasI AATT 1 cut(s) 56
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 2 cut(s) 289, 456
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 4 cut(s) 85, 88, 257, 428
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 3 cut(s) 111, 171, 359
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 2 cut(s) 289, 456
Van91I CCANNNNNTGG 1 cut(s) 384
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.