Rh1CG320100

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0017558
Physical Location & Seq
Forward (+)
59529040 .. 59529895
856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG320100.1

Sequence Viewer

Length: 438 bp
ATGGGTCATTTATCCTGCAAGAGTGATGTATATGGTTTTGGAGTTGTTATGCTTGAAATGTTGTCTGGAAGACGAGTTCTGGATAATAACCGTCCACCCAGGGAACACAATTTAGTTGAATGGGCCAAACCTTATCTAGCCAGCAAAAGCAGAGCTCTCAAAATTTTTGATGCTCGTATTGAAGGCCAGTACTCTGTGGCAGGAGCTCTTAAAGCAGCTAACCTTGCAAATCGATGCATATCAGCAGAACCCGAGTTTAGGCCAAACATGAATGAGGTGGTCACAGCATTAGAGCAGCTTCAGGAATCTGGTGACATGGAGGGTTCGGGAATCTCCCAAAATGAGCCTTGCCAAACTCCTTGTGCCAATTCAAGCAATCGCAGGAGAAGCACAAGCTGGATCAGCTTTAGGCCATGTGCTTCCTGCAGCTATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

145

Amino Acids

16.06

Weight (kDa)

8.25

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07570
fragaria_vesca FvH4_3g36200 FvH4_3g36200 FvH4_3g36200
pyrus_communis pycom15g24140
rosa_chinensis RchiOBHm_Chr1g0367651
rosa_multiflora Rmu_co8297867.1_g000001
rosa_roxburghii Rroxscaffold_2G00138910
rosa_samantha Rh1AG343000 Rh1CG320100 Rh1DG336400 Rh5DG453400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 407
AcsI RAATTY 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 4 cut(s) 56, 119, 182, 372
AjnI CCWGG 1 cut(s) 98
AloI GAACNNNNNNTCC 2 cut(s) 60, 92
AluBI AGCT 7 cut(s) 155, 206, 218, 298, 396, 405, 429
AluI AGCT 7 cut(s) 155, 206, 218, 298, 396, 405, 429
Alw21I GWGCWC 2 cut(s) 157, 208
AlwI GGATC 1 cut(s) 407
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 4 cut(s) 123, 184, 260, 410
ApeKI GCWGC 3 cut(s) 215, 295, 426
ApoI RAATTY 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 323
AvaI CYCGRG 1 cut(s) 251
BanII GRGCYC 2 cut(s) 157, 208
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 2 cut(s) 157, 208
BbvI GCAGC 2 cut(s) 227, 307
BciT130I CCWGG 1 cut(s) 100
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 424
BisI GCNGC 3 cut(s) 216, 296, 427
BlsI GCNGC 3 cut(s) 217, 297, 428
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 100
BmsI GCATC 2 cut(s) 160, 224
BpiI GAAGAC 1 cut(s) 76
Bsa29I ATCGAT 1 cut(s) 232
BsaBI GATNNNNATC 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 98, 99
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 238
BseBI CCWGG 1 cut(s) 100
BseCI ATCGAT 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 98, 99
BseJI GATNNNNATC 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 2 cut(s) 227, 307
BshFI GGCC 4 cut(s) 125, 186, 262, 412
BshVI ATCGAT 1 cut(s) 232
BsiHKAI GWGCWC 2 cut(s) 157, 208
BsiHKCI CYCGRG 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 258
BsnI GGCC 4 cut(s) 125, 186, 262, 412
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 157, 208
Bsp143I GATC 1 cut(s) 399
BspANI GGCC 4 cut(s) 125, 186, 262, 412
BspDI ATCGAT 1 cut(s) 232
BspMAI CTGCAG 1 cut(s) 428
BspPI GGATC 1 cut(s) 407
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 2 cut(s) 98, 99
BssMI GATC 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 142
BstKTI GATC 1 cut(s) 402
BstMBI GATC 1 cut(s) 399
BstMWI GCNNNNNNNGC 4 cut(s) 212, 224, 387, 402
BstNI CCWGG 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 98
BstSFI CTRYAG 1 cut(s) 424
BstV1I GCAGC 2 cut(s) 227, 307
BstV2I GAAGAC 1 cut(s) 76
Bsu15I ATCGAT 1 cut(s) 232
BsuRI GGCC 4 cut(s) 125, 186, 262, 412
BsuTUI ATCGAT 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 123
ClaI ATCGAT 1 cut(s) 232
Csp6I GTAC 1 cut(s) 190
CviAII CATG 3 cut(s) 268, 316, 414
CviQI GTAC 1 cut(s) 190
DpnI GATC 1 cut(s) 401
DpnII GATC 1 cut(s) 399
Ecl136II GAGCTC 2 cut(s) 155, 206
Eco24I GRGCYC 2 cut(s) 157, 208
Eco53kI GAGCTC 2 cut(s) 155, 206
Eco57I CTGAAG 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 251
EcoICRI GAGCTC 2 cut(s) 155, 206
EcoRII CCWGG 1 cut(s) 98
EcoT22I ATGCAT 1 cut(s) 239
EcoT38I GRGCYC 2 cut(s) 157, 208
FaeI CATG 3 cut(s) 271, 319, 417
FaiI YATR 9 cut(s) 31, 33, 50, 239, 269, 317, 415, 432, 436
FatI CATG 3 cut(s) 267, 315, 413
Fnu4HI GCNGC 3 cut(s) 216, 296, 427
FriOI GRGCYC 2 cut(s) 157, 208
Fsp4HI GCNGC 3 cut(s) 216, 296, 427
FspBI CTAG 1 cut(s) 137
GluI GCNGC 3 cut(s) 216, 296, 427
HaeIII GGCC 4 cut(s) 125, 186, 262, 412
Hin1II CATG 3 cut(s) 271, 319, 417
HinfI GANTC 2 cut(s) 305, 330
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 95
Hpy188III TCNNGA 4 cut(s) 66, 80, 302, 327
Hpy8I GTNNAC 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 4 cut(s) 18, 227, 237, 426
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 224, 387, 402
Hsp92II CATG 3 cut(s) 271, 319, 417
Kzo9I GATC 1 cut(s) 399
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 2 cut(s) 227, 307
LweI GCATC 2 cut(s) 160, 224
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 2 cut(s) 280, 311
MalI GATC 1 cut(s) 401
MboI GATC 1 cut(s) 399
MboII GAAGA 1 cut(s) 81
MhlI GDGCHC 2 cut(s) 157, 208
MluCI AATT 3 cut(s) 109, 162, 367
MnlI CCTC 2 cut(s) 268, 313
Mph1103I ATGCAT 1 cut(s) 239
MseI TTAA 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 100
MvaI CCWGG 1 cut(s) 100
MwoI GCNNNNNNNGC 4 cut(s) 212, 224, 387, 402
NdeII GATC 1 cut(s) 399
NlaIII CATG 3 cut(s) 271, 319, 417
NmuCI GTSAC 2 cut(s) 280, 311
NsiI ATGCAT 1 cut(s) 239
PasI CCCWGGG 1 cut(s) 99
PfeI GAWTC 2 cut(s) 305, 330
PkrI GCNGC 3 cut(s) 217, 297, 428
Psp124BI GAGCTC 2 cut(s) 157, 208
Psp6I CCWGG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 98
PspPI GGNCC 1 cut(s) 123
PstI CTGCAG 1 cut(s) 428
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SacI GAGCTC 2 cut(s) 157, 208
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 3 cut(s) 216, 296, 427
Sau3AI GATC 1 cut(s) 399
Sau96I GGNCC 1 cut(s) 123
ScaI AGTACT 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 100
SduI GDGCHC 2 cut(s) 157, 208
SfaNI GCATC 2 cut(s) 160, 224
SfcI CTRYAG 1 cut(s) 424
Sse9I AATT 3 cut(s) 109, 162, 367
SspMI CTAG 1 cut(s) 137
SstI GAGCTC 2 cut(s) 157, 208
StyD4I CCNGG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 232
TasI AATT 3 cut(s) 109, 162, 367
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 2 cut(s) 305, 330
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseFI GTSAC 2 cut(s) 280, 311
TseI GCWGC 3 cut(s) 215, 295, 426
Tsp45I GTSAC 2 cut(s) 280, 311
TspDTI ATGAA 1 cut(s) 284
XapI RAATTY 1 cut(s) 162
XspI CTAG 1 cut(s) 137
ZrmI AGTACT 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.