Rh1AG343000

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0017558
Physical Location & Seq
Forward (+)
57921679 .. 57922068
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG343000.1

Sequence Viewer

Length: 390 bp
ATGCTTGAAATGTTGTCTGGAAGACGAGTTCTGGATAATAACCGTCCACCCAGGGAACACAATTTAGTTGAATGGGCCAAACCTTACCTTGCCAGCAAAAGCAGAGCTCTCAAATTTTTTGATGCTCGTATTGAAGGCCAGTACTCTGTGGCAGGAGCTCTTAAAGCAGCTAACCTTGCAAATCGATGCATATCAGCAGAACCCGAGTTTAGGCCAAACATGAATGAGGTGGTCACAGCATTAGAGCAGCTTCAGGAATCTGGTGACATGGAGGGTTTGGGAATCTCACAAAATGAGCCTCGCCAAACTCCTTGTGCCAATTTAAGCAATCGCAGGAGAAGTACAAGCTGGATCAGCTTCAGGCCATGTGCTTCCCGCAGCTATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

129

Amino Acids

14.57

Weight (kDa)

9.25

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07570
fragaria_vesca FvH4_3g36200 FvH4_3g36200 FvH4_3g36200
pyrus_communis pycom15g24140
rosa_chinensis RchiOBHm_Chr1g0367651
rosa_multiflora Rmu_co8297867.1_g000001
rosa_roxburghii Rroxscaffold_2G00138910
rosa_samantha Rh1AG343000 Rh1CG320100 Rh1DG336400 Rh5DG453400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 376
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 2 cut(s) 236, 343
AfaI GTAC 2 cut(s) 143, 343
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 3 cut(s) 8, 71, 134
AjnI CCWGG 1 cut(s) 50
AloI GAACNNNNNNTCC 2 cut(s) 12, 44
AluBI AGCT 7 cut(s) 107, 158, 170, 250, 348, 357, 381
AluI AGCT 7 cut(s) 107, 158, 170, 250, 348, 357, 381
Alw21I GWGCWC 2 cut(s) 109, 160
AlwI GGATC 1 cut(s) 359
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 4 cut(s) 75, 136, 212, 362
ApeKI GCWGC 3 cut(s) 167, 247, 378
ApoI RAATTY 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 203
BanII GRGCYC 2 cut(s) 109, 160
BbsI GAAGAC 1 cut(s) 28
Bbv12I GWGCWC 2 cut(s) 109, 160
BbvI GCAGC 2 cut(s) 179, 259
BciT130I CCWGG 1 cut(s) 52
BisI GCNGC 3 cut(s) 168, 248, 379
BlsI GCNGC 3 cut(s) 169, 249, 380
BmcAI AGTACT 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 2 cut(s) 112, 176
BpiI GAAGAC 1 cut(s) 28
Bsa29I ATCGAT 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 50, 51
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 139
Bse8I GATNNNNATC 1 cut(s) 190
BseBI CCWGG 1 cut(s) 52
BseCI ATCGAT 1 cut(s) 184
BseDI CCNNGG 2 cut(s) 50, 51
BseJI GATNNNNATC 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 139
BseXI GCAGC 2 cut(s) 179, 259
BshFI GGCC 4 cut(s) 77, 138, 214, 364
BshVI ATCGAT 1 cut(s) 184
BsiHKAI GWGCWC 2 cut(s) 109, 160
BsiHKCI CYCGRG 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 210
BsnI GGCC 4 cut(s) 77, 138, 214, 364
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 109, 160
Bsp143I GATC 1 cut(s) 351
BspACI CCGC 1 cut(s) 376
BspANI GGCC 4 cut(s) 77, 138, 214, 364
BspDI ATCGAT 1 cut(s) 184
BspPI GGATC 1 cut(s) 359
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 50, 51
BssMI GATC 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 94
BstKTI GATC 1 cut(s) 354
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 3 cut(s) 164, 176, 354
BstNI CCWGG 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 179, 259
BstV2I GAAGAC 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 184
BsuRI GGCC 4 cut(s) 77, 138, 214, 364
BsuTUI ATCGAT 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 75
ClaI ATCGAT 1 cut(s) 184
Csp6I GTAC 2 cut(s) 142, 342
CviAII CATG 3 cut(s) 220, 268, 366
CviQI GTAC 2 cut(s) 142, 342
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Ecl136II GAGCTC 2 cut(s) 107, 158
Eco24I GRGCYC 2 cut(s) 109, 160
Eco53kI GAGCTC 2 cut(s) 107, 158
Eco57I CTGAAG 2 cut(s) 236, 343
Eco88I CYCGRG 1 cut(s) 203
EcoICRI GAGCTC 2 cut(s) 107, 158
EcoRII CCWGG 1 cut(s) 50
EcoT22I ATGCAT 1 cut(s) 191
EcoT38I GRGCYC 2 cut(s) 109, 160
FaeI CATG 3 cut(s) 223, 271, 369
FaiI YATR 6 cut(s) 191, 221, 269, 367, 384, 388
FatI CATG 3 cut(s) 219, 267, 365
FauI CCCGC 1 cut(s) 383
Fnu4HI GCNGC 3 cut(s) 168, 248, 379
FriOI GRGCYC 2 cut(s) 109, 160
Fsp4HI GCNGC 3 cut(s) 168, 248, 379
GluI GCNGC 3 cut(s) 168, 248, 379
HaeIII GGCC 4 cut(s) 77, 138, 214, 364
Hin1II CATG 3 cut(s) 223, 271, 369
HinfI GANTC 2 cut(s) 257, 282
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 47
Hpy188III TCNNGA 3 cut(s) 18, 32, 254
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 2 cut(s) 179, 189
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 176, 354
Hsp92II CATG 3 cut(s) 223, 271, 369
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 155
Lsp1109I GCAGC 2 cut(s) 179, 259
LweI GCATC 2 cut(s) 112, 176
MaeIII GTNAC 2 cut(s) 232, 263
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 1 cut(s) 33
MhlI GDGCHC 2 cut(s) 109, 160
MluCI AATT 3 cut(s) 61, 113, 319
MnlI CCTC 3 cut(s) 220, 265, 309
Mph1103I ATGCAT 1 cut(s) 191
MseI TTAA 2 cut(s) 162, 323
MspR9I CCNGG 1 cut(s) 52
MvaI CCWGG 1 cut(s) 52
MwoI GCNNNNNNNGC 3 cut(s) 164, 176, 354
NdeII GATC 1 cut(s) 351
NlaIII CATG 3 cut(s) 223, 271, 369
NmuCI GTSAC 2 cut(s) 232, 263
NsiI ATGCAT 1 cut(s) 191
PasI CCCWGGG 1 cut(s) 51
PfeI GAWTC 2 cut(s) 257, 282
PkrI GCNGC 3 cut(s) 169, 249, 380
Psp124BI GAGCTC 2 cut(s) 109, 160
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
PspPI GGNCC 1 cut(s) 75
RsaI GTAC 2 cut(s) 143, 343
RsaNI GTAC 2 cut(s) 142, 342
SacI GAGCTC 2 cut(s) 109, 160
SaqAI TTAA 2 cut(s) 162, 323
SatI GCNGC 3 cut(s) 168, 248, 379
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 1 cut(s) 75
ScaI AGTACT 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 52
SduI GDGCHC 2 cut(s) 109, 160
SfaNI GCATC 2 cut(s) 112, 176
Sse9I AATT 3 cut(s) 61, 113, 319
SsiI CCGC 1 cut(s) 376
SstI GAGCTC 2 cut(s) 109, 160
StyD4I CCNGG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 44
TaqI TCGA 1 cut(s) 184
TasI AATT 3 cut(s) 61, 113, 319
TatI WGTACW 2 cut(s) 141, 341
TfiI GAWTC 2 cut(s) 257, 282
Tru1I TTAA 2 cut(s) 162, 323
Tru9I TTAA 2 cut(s) 162, 323
TseFI GTSAC 2 cut(s) 232, 263
TseI GCWGC 3 cut(s) 167, 247, 378
Tsp45I GTSAC 2 cut(s) 232, 263
TspDTI ATGAA 1 cut(s) 236
XapI RAATTY 1 cut(s) 113
ZrmI AGTACT 1 cut(s) 143
Zsp2I ATGCAT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.