Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017558

Physical Location & Seq

Genomic Coordinates Reverse (-)

77133414 .. 77134412

Gene Structure 999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCAGTCAGAGGTGAACTTTGTAGGAAGGCTTTTTCATCCCAACCTTGTGAAGCTGTTGGGATACTGTTGGGAAGATAAGGAGTTACTCCTTGTTTATGAGTTCATGCCCAAAGGAAGCTTGGAATACCATCTGTTCAGATGGAATCCAAATATTGAATCGCTCTCTTGGGAAATAAGAATCAAAATAGCTATCGGAGTAGCTCGAGGGCTGGCTTACTTGCACAGTTTAGAAAAACAAGTTATATACAGAGATTTTAAGACCTCAAATATATTGCTTGATGTGAATTACAATGCAAAACTCTCGGATTTTGGCTTGGCGAAATTGGGGCCAACTGGTGGAGACTCACATGTGTCAACTAGGGTGATGGGAACATATGGTTATGCTGCTCCAGAATACATTGTAACAGCTGATGCCTCACTAGTGCACTGTAAATTAACAGGTCATTTGTACGTGAAGAGTGATGTGTATGGCTTTGGTGTTGTACTGCTTGAACTTCTCACAGGGTTACGAGCACTTGATCCTAAACGCCCCCAGGGACAAGTGAATCTGGTTGAGTGGGCTAAACCACTTCTTTCAAATAAAAGAAAGTTGAAAACCATCATCGATGCGCAGATGGAAGGCCAATATTCCTTGAAAGCAGCATCAAGGGCAGGACAGATTACTCTAAAATGTCTAGCACCAGATCCTAAAATCCGACCTCCCATGAAAGAAGTTGTGGAGGAACTGGAACAGATTCGGGCAATCAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

251

Amino Acids

28.33

Weight (kDa)

8.95

Isoelectric Point (pI)

26.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 241	2e-34	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 243	8.6e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0017558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07570
fragaria_vesca	FvH4_3g36200 FvH4_3g36200 FvH4_3g36200
pyrus_communis	pycom15g24140
rosa_chinensis	RchiOBHm_Chr1g0367651
rosa_multiflora	Rmu_co8297867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138910
rosa_samantha	Rh1AG343000 Rh1CG320100 Rh1DG336400 Rh5DG453400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	612
AccB7I	CCANNNNNTGG	1 cut(s)	338
AclWI	GGATC	2 cut(s)	515, 680
AfaI	GTAC	2 cut(s)	452, 486
AfiI	CCNNNNNNNGG	1 cut(s)	338
AflIII	ACRYGT	1 cut(s)	349
AgsI	TTSAA	5 cut(s)	158, 494, 579, 595, 637
AhlI	ACTAGT	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	5 cut(s)	55, 120, 191, 203, 410
AluI	AGCT	5 cut(s)	55, 120, 191, 203, 410
Alw21I	GWGCWC	2 cut(s)	429, 517
Alw26I	GTCTC	1 cut(s)	336
Alw44I	GTGCAC	1 cut(s)	425
AlwI	GGATC	2 cut(s)	515, 680
Ama87I	CYCGRG	1 cut(s)	204
AoxI	GGCC	2 cut(s)	329, 622
ApaLI	GTGCAC	1 cut(s)	425
ApeKI	GCWGC	2 cut(s)	386, 641
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	1 cut(s)	613
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	25, 376
AvaI	CYCGRG	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	429
Bbv12I	GWGCWC	2 cut(s)	429, 517
BbvI	GCAGC	2 cut(s)	373, 653
BccI	CCATC	5 cut(s)	135, 138, 361, 608, 610
BcgI	CGANNNNNNTGC	2 cut(s)	285, 319
BciT130I	CCWGG	1 cut(s)	536
BciVI	GTATCC	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	336
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	3 cut(s)	360, 422, 677
BfuI	GTATCC	1 cut(s)	56
BisI	GCNGC	2 cut(s)	387, 642
BlsI	GCNGC	2 cut(s)	388, 643
Bme1390I	CCNGG	1 cut(s)	536
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	536
BmsI	GCATC	3 cut(s)	403, 598, 653
BpmI	CTGGAG	1 cut(s)	375
Bsa29I	ATCGAT	1 cut(s)	606
BsaAI	YACGTR	1 cut(s)	454
BsaJI	CCNNGG	2 cut(s)	534, 535
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	2 cut(s)	340, 732
BseBI	CCWGG	1 cut(s)	536
BseCI	ATCGAT	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	534, 535
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseNI	ACTGG	2 cut(s)	340, 732
BseSI	GKGCMC	1 cut(s)	429
BseXI	GCAGC	2 cut(s)	373, 653
BshFI	GGCC	2 cut(s)	331, 624
BshVI	ATCGAT	1 cut(s)	606
BsiHKAI	GWGCWC	2 cut(s)	429, 517
BsiHKCI	CYCGRG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	552
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	552
BsnI	GGCC	2 cut(s)	331, 624
BsoBI	CYCGRG	1 cut(s)	204
Bsp1286I	GDGCHC	2 cut(s)	429, 517
Bsp143I	GATC	2 cut(s)	520, 685
BspANI	GGCC	2 cut(s)	331, 624
BspDI	ATCGAT	1 cut(s)	606
BspLI	GGNNCC	1 cut(s)	330
BspPI	GGATC	2 cut(s)	515, 680
BsrI	ACTGG	2 cut(s)	340, 732
BssECI	CCNNGG	2 cut(s)	534, 535
BssMI	GATC	2 cut(s)	520, 685
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	3 cut(s)	68, 227, 431
Bst6I	CTCTTC	1 cut(s)	452
BstBAI	YACGTR	1 cut(s)	454
BstC8I	GCNNGC	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	613
BstKTI	GATC	2 cut(s)	523, 688
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	2 cut(s)	520, 685
BstMWI	GCNNNNNNNGC	1 cut(s)	650
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	373, 653
BstX2I	RGATCY	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	685
Bsu15I	ATCGAT	1 cut(s)	606
BsuI	GTATCC	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	331, 624
BsuTUI	ATCGAT	1 cut(s)	606
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	329
ClaI	ATCGAT	1 cut(s)	606
Csp6I	GTAC	2 cut(s)	451, 485
CviAII	CATG	3 cut(s)	106, 350, 706
CviQI	GTAC	2 cut(s)	451, 485
DpnI	GATC	2 cut(s)	522, 687
DpnII	GATC	2 cut(s)	520, 685
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	534
FaeI	CATG	3 cut(s)	109, 353, 709
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	3 cut(s)	105, 349, 705
FauNDI	CATATG	1 cut(s)	376
Fnu4HI	GCNGC	2 cut(s)	387, 642
FokI	GGATG	1 cut(s)	24
Fsp4HI	GCNGC	2 cut(s)	387, 642
FspBI	CTAG	3 cut(s)	360, 422, 677
FspI	TGCGCA	1 cut(s)	612
GlaI	GCGC	1 cut(s)	612
GluI	GCNGC	2 cut(s)	387, 642
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	331, 624
HhaI	GCGC	1 cut(s)	613
Hin1II	CATG	3 cut(s)	109, 353, 709
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HindIII	AAGCTT	1 cut(s)	118
HinfI	GANTC	6 cut(s)	145, 158, 180, 344, 547, 736
HphI	GGTGA	2 cut(s)	25, 376
Hpy166II	GTNNAC	3 cut(s)	16, 357, 427
Hpy188I	TCNGA	5 cut(s)	10, 140, 197, 307, 698
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	3 cut(s)	16, 357, 427
HpyAV	CCTTC	2 cut(s)	21, 614
HpyCH4III	ACNGT	3 cut(s)	68, 227, 431
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	4 cut(s)	4, 223, 296, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	650
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	3 cut(s)	109, 353, 709
HspAI	GCGC	1 cut(s)	611
Kzo9I	GATC	2 cut(s)	520, 685
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	2 cut(s)	373, 653
LweI	GCATC	3 cut(s)	403, 598, 653
MaeI	CTAG	3 cut(s)	360, 422, 677
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	3 cut(s)	84, 403, 507
MalI	GATC	2 cut(s)	522, 687
MboI	GATC	2 cut(s)	520, 685
MboII	GAAGA	2 cut(s)	86, 469
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	2 cut(s)	429, 517
MluCI	AATT	3 cut(s)	286, 323, 434
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	721
MnlI	CCTC	6 cut(s)	4, 200, 274, 427, 711, 715
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	2 cut(s)	258, 437
MspA1I	CMGCKG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	536
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	1 cut(s)	650
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	2 cut(s)	520, 685
NlaIII	CATG	3 cut(s)	109, 353, 709
NlaIV	GGNNCC	1 cut(s)	330
NsbI	TGCGCA	1 cut(s)	612
NspI	RCATGY	1 cut(s)	353
PaeR7I	CTCGAG	1 cut(s)	204
PasI	CCCWGGG	1 cut(s)	535
PciI	ACATGT	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	5 cut(s)	145, 158, 180, 547, 736
PflMI	CCANNNNNTGG	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	388, 643
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Ppu21I	YACGTR	1 cut(s)	454
PscI	ACATGT	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	329
PspXI	VCTCGAGB	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	685
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	2 cut(s)	452, 486
RsaNI	GTAC	2 cut(s)	451, 485
SaqAI	TTAA	2 cut(s)	258, 437
SatI	GCNGC	2 cut(s)	387, 642
Sau3AI	GATC	2 cut(s)	520, 685
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	2 cut(s)	429, 517
SfaNI	GCATC	3 cut(s)	403, 598, 653
Sfr274I	CTCGAG	1 cut(s)	204
SlaI	CTCGAG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
SpeI	ACTAGT	1 cut(s)	421
Sse9I	AATT	3 cut(s)	286, 323, 434
SspI	AATATT	2 cut(s)	154, 629
SspMI	CTAG	3 cut(s)	360, 422, 677
StyD4I	CCNGG	1 cut(s)	534
TaaI	ACNGT	3 cut(s)	68, 227, 431
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	2 cut(s)	205, 606
TasI	AATT	3 cut(s)	286, 323, 434
TatI	WGTACW	1 cut(s)	484
TfiI	GAWTC	5 cut(s)	145, 158, 180, 547, 736
Tru1I	TTAA	2 cut(s)	258, 437
Tru9I	TTAA	2 cut(s)	258, 437
TscAI	CASTG	1 cut(s)	434
TseI	GCWGC	2 cut(s)	386, 641
TspDTI	ATGAA	3 cut(s)	26, 94, 722
TspRI	CASTG	1 cut(s)	434
Van91I	CCANNNNNTGG	1 cut(s)	338
VneI	GTGCAC	1 cut(s)	425
XceI	RCATGY	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	3 cut(s)	360, 422, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.