Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0017558

Physical Location & Seq

Genomic Coordinates Forward (+)

72293853 .. 72296819

Gene Structure 2967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG453400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCAGAAGTGAATTATTTGGGGCAGTTCCAAAATCCTAATCTTGTGAAACTAATTGGCTATTGCTTGGAAGATGAGCAGCGCCTTTTGGTATATGAATTCATGCCTCGAGGCAGCCTGGAAAATCATTTGTTCAGGAGAGGTTCTTATTTTCAACCTCTTTCTTGGACCCTCCGGATGAAGGTTGCCCTTGGTGCTGCAAAGGGGCTGGCCTTTTTGCATAGTGCTGAAACAAGGGTGATATATCGAGACTTCAAGACGTCTAATATCTTGCTTGATTCGAACTACAATGCAAAGCTGTCAGATTTTGGCTTGGCCAAGGATGGGCCAACAGGTGATAAAAGCCACGTCTCTACTAGGGTGATGGGCACATATGGATATGCAGCCCCAGAATATCTAGCCACAGGTCATCTTACTGCCAAGAGTGATATCTATAGTTTTGGAGTTGTCTTATTGGAGATGTTATCTGGCCGGAGAGCAGTTGACAAGAATCGGCCATCTGGGGAACACAATCTAGTTGAGTGGGCTAAACCCTTCCTGGCAAACAAGCGCAAGATCTTTCGCGTCATAGACAACCGTTTAGAAGGCCAGTATTCAATGGATGGAGCTTATAAGGCAGCTACCCTCGCATTACGATGCCTGTCCACAGAATCCAAGCTCAGGCCAACCATGGATGAGGTCGTCAAAGCACTGGAGCAACTGCAGGATTCTAATGTCCCCACCAGCAATCAAATCCATGCACACAGGATGCGCAGGCGAAGTGCAGATGACGCTAGCAAAGCAAGGCGTGCATCTATAGAAGAAGCTAGCAAAGCAAGGCGTGCATCTATAGAAGAAGCTAACAAAGCAAGGAATACTGTTGCTTATCCTCGGCCATCTGCTTCGCCCCTATATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0010119 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902456 GO:1902458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

299

Amino Acids

33.6

Weight (kDa)

9.61

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 231	3.3e-36	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 229	2.2e-38	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07570
fragaria_vesca	FvH4_3g36200 FvH4_3g36200 FvH4_3g36200
pyrus_communis	pycom15g24140
rosa_chinensis	RchiOBHm_Chr1g0367651
rosa_multiflora	Rmu_co8297867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138910
rosa_samantha	Rh1AG343000 Rh1CG320100 Rh1DG336400 Rh5DG453400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
AatII	GACGTC	1 cut(s)	263
AbsI	CCTCGAGG	1 cut(s)	108
Acc16I	TGCGCA	1 cut(s)	752
AccII	CGCG	1 cut(s)	564
AccIII	TCCGGA	1 cut(s)	174
AcoI	YGGCCR	4 cut(s)	315, 469, 494, 872
AcsI	RAATTY	1 cut(s)	98
AcyI	GRCGYC	1 cut(s)	260
AfiI	CCNNNNNNNGG	3 cut(s)	181, 324, 660
AgsI	TTSAA	3 cut(s)	155, 256, 597
AjiI	CACGTC	1 cut(s)	349
AjnI	CCWGG	2 cut(s)	117, 537
AluBI	AGCT	6 cut(s)	298, 608, 620, 658, 806, 839
AluI	AGCT	6 cut(s)	298, 608, 620, 658, 806, 839
Alw26I	GTCTC	2 cut(s)	243, 355
Ama87I	CYCGRG	1 cut(s)	108
Aor13HI	TCCGGA	1 cut(s)	174
AoxI	GGCC	8 cut(s)	210, 315, 326, 469, 494, 586, 662, 872
ApeKI	GCWGC	5 cut(s)	79, 114, 197, 383, 617
ApoI	RAATTY	1 cut(s)	98
AspLEI	GCGC	3 cut(s)	84, 552, 753
AspS9I	GGNCC	2 cut(s)	168, 326
AsuHPI	GGTGA	3 cut(s)	250, 347, 373
AsuII	TTCGAA	1 cut(s)	281
AsuNHI	GCTAGC	2 cut(s)	773, 806
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	371
BalI	TGGCCA	1 cut(s)	317
BbvI	GCAGC	5 cut(s)	91, 126, 184, 395, 629
BccI	CCATC	5 cut(s)	317, 358, 505, 596, 883
BciT130I	CCWGG	2 cut(s)	119, 539
BcoDI	GTCTC	2 cut(s)	243, 355
BfaI	CTAG	5 cut(s)	357, 398, 515, 774, 807
BfmI	CTRYAG	4 cut(s)	433, 701, 795, 828
BfoI	RGCGCY	1 cut(s)	85
BglII	AGATCT	1 cut(s)	555
BisI	GCNGC	5 cut(s)	80, 115, 198, 384, 618
BlsI	GCNGC	5 cut(s)	81, 116, 199, 385, 619
Bme1390I	CCNGG	2 cut(s)	119, 539
Bme18I	GGWCC	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	108
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	168, 326
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	2 cut(s)	119, 539
BmsI	GCATC	4 cut(s)	626, 738, 800, 833
BmtI	GCTAGC	2 cut(s)	777, 810
BpmI	CTGGAG	1 cut(s)	713
Bpu10I	CCTNAGC	1 cut(s)	659
Bpu14I	TTCGAA	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	260
BsaJI	CCNNGG	4 cut(s)	190, 318, 669, 869
BsaWI	WCCGGW	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 324, 660
Bse1I	ACTGG	2 cut(s)	589, 696
BseAI	TCCGGA	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	119, 539
BseDI	CCNNGG	4 cut(s)	190, 318, 669, 869
BseGI	GGATG	5 cut(s)	183, 328, 607, 679, 753
BseLI	CCNNNNNNNGG	3 cut(s)	181, 324, 660
BseMII	CTCAG	1 cut(s)	673
BseNI	ACTGG	2 cut(s)	589, 696
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	5 cut(s)	91, 126, 184, 395, 629
BsgI	GTGCAG	1 cut(s)	783
Bsh1236I	CGCG	1 cut(s)	564
BshFI	GGCC	8 cut(s)	212, 317, 328, 471, 496, 588, 664, 874
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	175, 472
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	3 cut(s)	181, 324, 660
BsmAI	GTCTC	2 cut(s)	243, 355
BsmBI	CGTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	701
BsnI	GGCC	8 cut(s)	212, 317, 328, 471, 496, 588, 664, 874
BsoBI	CYCGRG	1 cut(s)	108
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp13I	TCCGGA	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	555
Bsp19I	CCATGG	1 cut(s)	669
BspANI	GGCC	8 cut(s)	212, 317, 328, 471, 496, 588, 664, 874
BspCNI	CTCAG	1 cut(s)	672
BspEI	TCCGGA	1 cut(s)	174
BspFNI	CGCG	1 cut(s)	564
BspLI	GGNNCC	1 cut(s)	170
BspMAI	CTGCAG	1 cut(s)	705
BspOI	GCTAGC	2 cut(s)	777, 810
BspT104I	TTCGAA	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	589, 696
BssECI	CCNNGG	4 cut(s)	190, 318, 669, 869
BssMI	GATC	1 cut(s)	555
BssNI	GRCGYC	1 cut(s)	260
BssT1I	CCWWGG	3 cut(s)	190, 318, 669
Bst2UI	CCWGG	2 cut(s)	119, 539
Bst4CI	ACNGT	2 cut(s)	578, 859
BstACI	GRCGYC	1 cut(s)	260
BstAPI	GCANNNNNTGC	2 cut(s)	788, 821
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	6 cut(s)	210, 755, 775, 789, 808, 822
BstDEI	CTNAG	1 cut(s)	659
BstDSI	CCRYGG	1 cut(s)	669
BstF5I	GGATG	5 cut(s)	183, 328, 607, 679, 753
BstFNI	CGCG	1 cut(s)	564
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	3 cut(s)	84, 552, 753
BstKTI	GATC	1 cut(s)	558
BstMAI	GTCTC	2 cut(s)	243, 355
BstMBI	GATC	1 cut(s)	555
BstMWI	GCNNNNNNNGC	9 cut(s)	194, 614, 626, 770, 779, 788, 812, 821, 845
BstNI	CCWGG	2 cut(s)	119, 539
BstSCI	CCNGG	2 cut(s)	117, 537
BstSFI	CTRYAG	4 cut(s)	433, 701, 795, 828
BstSLI	GKGCMC	1 cut(s)	371
BstUI	CGCG	1 cut(s)	564
BstV1I	GCAGC	5 cut(s)	91, 126, 184, 395, 629
BstX2I	RGATCY	1 cut(s)	555
BstYI	RGATCY	1 cut(s)	555
BsuRI	GGCC	8 cut(s)	212, 317, 328, 471, 496, 588, 664, 874
BtgI	CCRYGG	1 cut(s)	669
BtrI	CACGTC	1 cut(s)	349
BtsCI	GGATG	5 cut(s)	183, 328, 607, 679, 753
BtsIMutI	CAGTG	1 cut(s)	689
Cac8I	GCNNGC	6 cut(s)	210, 755, 775, 789, 808, 822
CfoI	GCGC	3 cut(s)	84, 552, 753
Cfr13I	GGNCC	2 cut(s)	168, 326
CseI	GACGC	2 cut(s)	553, 779
CviAII	CATG	3 cut(s)	103, 670, 737
DdeI	CTNAG	1 cut(s)	659
DpnI	GATC	1 cut(s)	557
DpnII	GATC	1 cut(s)	555
EaeI	YGGCCR	4 cut(s)	315, 469, 494, 872
Eco130I	CCWWGG	3 cut(s)	190, 318, 669
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	108
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	117, 537
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	3 cut(s)	190, 318, 669
ErhI	CCWWGG	3 cut(s)	190, 318, 669
Esp3I	CGTCTC	1 cut(s)	355
FaeI	CATG	3 cut(s)	106, 673, 740
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	3 cut(s)	102, 669, 736
FauNDI	CATATG	1 cut(s)	373
Fnu4HI	GCNGC	5 cut(s)	80, 115, 198, 384, 618
FokI	GGATG	5 cut(s)	190, 335, 614, 686, 760
Fsp4HI	GCNGC	5 cut(s)	80, 115, 198, 384, 618
FspBI	CTAG	5 cut(s)	357, 398, 515, 774, 807
FspI	TGCGCA	1 cut(s)	752
GlaI	GCGC	3 cut(s)	83, 551, 752
GluI	GCNGC	5 cut(s)	80, 115, 198, 384, 618
GsuI	CTGGAG	1 cut(s)	713
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	8 cut(s)	212, 317, 328, 471, 496, 588, 664, 874
HapII	CCGG	2 cut(s)	175, 472
HgaI	GACGC	2 cut(s)	553, 779
HhaI	GCGC	3 cut(s)	84, 552, 753
Hin1I	GRCGYC	1 cut(s)	260
Hin1II	CATG	3 cut(s)	106, 673, 740
Hin6I	GCGC	3 cut(s)	82, 550, 751
HinP1I	GCGC	3 cut(s)	82, 550, 751
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	4 cut(s)	278, 490, 650, 707
HpaII	CCGG	2 cut(s)	175, 472
HphI	GGTGA	3 cut(s)	250, 347, 373
Hpy166II	GTNNAC	2 cut(s)	484, 645
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	4 cut(s)	136, 175, 248, 256
Hpy8I	GTNNAC	2 cut(s)	484, 645
HpyAV	CCTTC	3 cut(s)	175, 544, 578
HpyCH4III	ACNGT	2 cut(s)	578, 859
HpyCH4IV	ACGT	2 cut(s)	260, 348
HpyCH4V	TGCA	9 cut(s)	200, 220, 293, 383, 703, 740, 764, 791, 824
HpyF10VI	GCNNNNNNNGC	9 cut(s)	194, 614, 626, 770, 779, 788, 812, 821, 845
HpyF3I	CTNAG	1 cut(s)	659
HpySE526I	ACGT	2 cut(s)	260, 348
Hsp92I	GRCGYC	1 cut(s)	260
Hsp92II	CATG	3 cut(s)	106, 673, 740
HspAI	GCGC	3 cut(s)	82, 550, 751
Kpn2I	TCCGGA	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	555
LmnI	GCTCC	2 cut(s)	605, 694
Lsp1109I	GCAGC	5 cut(s)	91, 126, 184, 395, 629
LweI	GCATC	4 cut(s)	626, 738, 800, 833
MaeI	CTAG	5 cut(s)	357, 398, 515, 774, 807
MaeII	ACGT	2 cut(s)	260, 348
MalI	GATC	1 cut(s)	557
MboI	GATC	1 cut(s)	555
MboII	GAAGA	3 cut(s)	83, 812, 845
MflI	RGATCY	1 cut(s)	555
MhlI	GDGCHC	1 cut(s)	371
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	3 cut(s)	13, 54, 98
MluNI	TGGCCA	1 cut(s)	317
MnlI	CCTC	8 cut(s)	104, 117, 134, 168, 182, 635, 670, 879
Mox20I	TGGCCA	1 cut(s)	317
MroI	TCCGGA	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	317
MslI	CAYNNNNRTG	1 cut(s)	634
Msp20I	TGGCCA	1 cut(s)	317
MspI	CCGG	2 cut(s)	175, 472
MspR9I	CCNGG	2 cut(s)	119, 539
MvaI	CCWGG	2 cut(s)	119, 539
MvnI	CGCG	1 cut(s)	564
MwoI	GCNNNNNNNGC	9 cut(s)	194, 614, 626, 770, 779, 788, 812, 821, 845
NcoI	CCATGG	1 cut(s)	669
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	1 cut(s)	555
NheI	GCTAGC	2 cut(s)	773, 806
NlaIII	CATG	3 cut(s)	106, 673, 740
NlaIV	GGNNCC	1 cut(s)	170
NmeAIII	GCCGAG	1 cut(s)	850
NsbI	TGCGCA	1 cut(s)	752
NspV	TTCGAA	1 cut(s)	281
PaeR7I	CTCGAG	1 cut(s)	108
PfeI	GAWTC	4 cut(s)	278, 490, 650, 707
PkrI	GCNGC	5 cut(s)	81, 116, 199, 385, 619
PsiI	TTATAA	1 cut(s)	612
Psp6I	CCWGG	2 cut(s)	117, 537
PspGI	CCWGG	2 cut(s)	117, 537
PspN4I	GGNNCC	1 cut(s)	170
PspPI	GGNCC	2 cut(s)	168, 326
PspXI	VCTCGAGB	1 cut(s)	108
PstI	CTGCAG	1 cut(s)	705
PsuI	RGATCY	1 cut(s)	555
RseI	CAYNNNNRTG	1 cut(s)	634
SatI	GCNGC	5 cut(s)	80, 115, 198, 384, 618
Sau3AI	GATC	1 cut(s)	555
Sau96I	GGNCC	2 cut(s)	168, 326
ScrFI	CCNGG	2 cut(s)	119, 539
SduI	GDGCHC	1 cut(s)	371
SfaNI	GCATC	4 cut(s)	626, 738, 800, 833
SfcI	CTRYAG	4 cut(s)	433, 701, 795, 828
Sfr274I	CTCGAG	1 cut(s)	108
SfuI	TTCGAA	1 cut(s)	281
SinI	GGWCC	1 cut(s)	168
SlaI	CTCGAG	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	634
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	3 cut(s)	13, 54, 98
SspMI	CTAG	5 cut(s)	357, 398, 515, 774, 807
StyD4I	CCNGG	2 cut(s)	117, 537
StyI	CCWWGG	3 cut(s)	190, 318, 669
TaaI	ACNGT	2 cut(s)	578, 859
TaiI	ACGT	2 cut(s)	263, 351
TaqI	TCGA	3 cut(s)	109, 247, 281
TasI	AATT	3 cut(s)	13, 54, 98
TfiI	GAWTC	4 cut(s)	278, 490, 650, 707
TscAI	CASTG	1 cut(s)	696
TseI	GCWGC	5 cut(s)	79, 114, 197, 383, 617
TspDTI	ATGAA	3 cut(s)	91, 111, 194
TspRI	CASTG	1 cut(s)	696
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	98
XhoI	CTCGAG	1 cut(s)	108
XspI	CTAG	5 cut(s)	357, 398, 515, 774, 807
ZraI	GACGTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.