RchiOBHm_Chr1g0367651

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017558
Physical Location & Seq
Forward (+)
57973773 .. 57976354
2582 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59207

Sequence Viewer

Length: 738 bp
ATGCCTCATGGAAGCTTGGAGATTCATCTATATGGAAGGGATTCTTACCTTGAACCACTTTCATGGACCCTGCGTATGAAGATTGCCCTTGGTGTTGCCAAGGTTCTTGCATTTCTTCATGGTACTGAGGGAAAAGTGATCCATCGGGACGTTAAAACTTCTAATATTCTGCTCGATTCAACCTACAATGCCAAACTCTCTGATTTTGGTTTGGCGAAGGATGTACCAGCTGGTGATGAAAGCCATGTCTTAACAAGGGTGGTGGGGACACATGGGTATGGAGCTCCTGAGTATATTTCTGCAGGTCATTTATCCTGCAAGAGTGATGTATATGGTTTTGGAGTAGTTATGCTTGAAATGTTGTCTGGAAGACGAGTTCTAGATAATAACCGTCCACCCAGGGAACACAATTTAGTTGAATGGGCCAAACCTTACCTTGCCAGCAAAAGCAGAGCTCTCAAAATTTTTGATGCTCGTACTGAAGGCCAGTACTCTCTGGCAGGAGCTCTTAAAGCAGCTAACCTTGCAAATCGATGCATATCAGCAGAACCCGAGTTTAGGCCAAACATGAATGAGGTGGTCACAGCATCAGAGCAGCTTCAGGAATCTGGTGACATGGAGGGTTCGGGAGTCTCCCAAAATGAGCCTCGCCAAACTCCTTGTGCCAATTCAAGCATTCGCAGGAGAAGCACAAGCTGGATCAGCTTCAGGCCATGTGCTTCCCGCAGCTATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

245

Amino Acids

27.0

Weight (kDa)

8.64

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 194 5.2e-24 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 25 - 195 3.1e-29 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07570
fragaria_vesca FvH4_3g36200 FvH4_3g36200 FvH4_3g36200
pyrus_communis pycom15g24140
rosa_chinensis RchiOBHm_Chr1g0367651
rosa_multiflora Rmu_co8297867.1_g000001
rosa_roxburghii Rroxscaffold_2G00138910
rosa_samantha Rh1AG343000 Rh1CG320100 Rh1DG336400 Rh5DG453400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 293
AciI CCGC 1 cut(s) 724
AclWI GGATC 2 cut(s) 133, 707
AcsI RAATTY 1 cut(s) 462
AcuI CTGAAG 3 cut(s) 501, 584, 691
AfaI GTAC 4 cut(s) 124, 225, 478, 491
AfiI CCNNNNNNNGG 1 cut(s) 558
AgsI TTSAA 5 cut(s) 53, 180, 356, 419, 672
AjnI CCWGG 1 cut(s) 398
AloI GAACNNNNNNTCC 2 cut(s) 360, 392
Alw21I GWGCWC 3 cut(s) 286, 457, 508
Alw26I GTCTC 1 cut(s) 637
AlwI GGATC 2 cut(s) 133, 707
Ama87I CYCGRG 1 cut(s) 551
AoxI GGCC 4 cut(s) 423, 484, 560, 710
ApeKI GCWGC 3 cut(s) 515, 595, 726
ApoI RAATTY 1 cut(s) 462
Asp700I GAANNNNTTC 1 cut(s) 40
AspS9I GGNCC 2 cut(s) 66, 423
AsuHPI GGTGA 2 cut(s) 245, 623
AvaI CYCGRG 1 cut(s) 551
AvaII GGWCC 1 cut(s) 66
BanII GRGCYC 3 cut(s) 286, 457, 508
BbsI GAAGAC 1 cut(s) 376
Bbv12I GWGCWC 3 cut(s) 286, 457, 508
BbvI GCAGC 2 cut(s) 527, 607
BccI CCATC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 400
BcoDI GTCTC 1 cut(s) 637
BfaI CTAG 1 cut(s) 380
BfmI CTRYAG 1 cut(s) 300
BfuAI ACCTGC 1 cut(s) 293
BisI GCNGC 3 cut(s) 516, 596, 727
BlsI GCNGC 3 cut(s) 517, 597, 728
BmcAI AGTACT 1 cut(s) 491
Bme1390I CCNGG 1 cut(s) 400
Bme18I GGWCC 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 551
BmgT120I GGNCC 2 cut(s) 66, 423
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 400
BmsI GCATC 3 cut(s) 460, 524, 596
BpiI GAAGAC 1 cut(s) 376
Bsa29I ATCGAT 1 cut(s) 532
BsaBI GATNNNNATC 1 cut(s) 538
BsaJI CCNNGG 4 cut(s) 88, 99, 398, 399
Bsc4I CCNNNNNNNGG 1 cut(s) 558
Bse1I ACTGG 1 cut(s) 487
Bse8I GATNNNNATC 1 cut(s) 538
BseBI CCWGG 1 cut(s) 400
BseCI ATCGAT 1 cut(s) 532
BseDI CCNNGG 4 cut(s) 88, 99, 398, 399
BseGI GGATG 1 cut(s) 226
BseJI GATNNNNATC 1 cut(s) 538
BseLI CCNNNNNNNGG 1 cut(s) 558
BseMII CTCAG 2 cut(s) 117, 279
BseNI ACTGG 1 cut(s) 487
BseXI GCAGC 2 cut(s) 527, 607
BshFI GGCC 4 cut(s) 425, 486, 562, 712
BshVI ATCGAT 1 cut(s) 532
BsiHKAI GWGCWC 3 cut(s) 286, 457, 508
BsiHKCI CYCGRG 1 cut(s) 551
BslFI GGGAC 2 cut(s) 161, 280
BslI CCNNNNNNNGG 1 cut(s) 558
BsmAI GTCTC 1 cut(s) 637
BsmFI GGGAC 2 cut(s) 161, 280
BsmI GAATGC 1 cut(s) 675
BsnI GGCC 4 cut(s) 425, 486, 562, 712
BsoBI CYCGRG 1 cut(s) 551
Bsp1286I GDGCHC 3 cut(s) 286, 457, 508
Bsp143I GATC 2 cut(s) 138, 699
BspACI CCGC 1 cut(s) 724
BspANI GGCC 4 cut(s) 425, 486, 562, 712
BspCNI CTCAG 2 cut(s) 118, 280
BspDI ATCGAT 1 cut(s) 532
BspLI GGNNCC 1 cut(s) 68
BspMAI CTGCAG 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 293
BspPI GGATC 2 cut(s) 133, 707
BsrI ACTGG 1 cut(s) 487
BssECI CCNNGG 4 cut(s) 88, 99, 398, 399
BssMI GATC 2 cut(s) 138, 699
BssT1I CCWWGG 2 cut(s) 88, 99
Bst2UI CCWGG 1 cut(s) 400
Bst4CI ACNGT 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 442
BstDEI CTNAG 2 cut(s) 126, 288
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 2 cut(s) 141, 702
BstMAI GTCTC 1 cut(s) 637
BstMBI GATC 2 cut(s) 138, 699
BstMWI GCNNNNNNNGC 4 cut(s) 512, 524, 687, 702
BstNI CCWGG 1 cut(s) 400
BstSCI CCNGG 1 cut(s) 398
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 2 cut(s) 527, 607
BstV2I GAAGAC 1 cut(s) 376
BstXI CCANNNNNNTGG 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 532
BsuRI GGCC 4 cut(s) 425, 486, 562, 712
BsuTUI ATCGAT 1 cut(s) 532
BtsCI GGATG 1 cut(s) 226
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 1 cut(s) 442
Cfr13I GGNCC 2 cut(s) 66, 423
ClaI ATCGAT 1 cut(s) 532
Csp6I GTAC 4 cut(s) 123, 224, 477, 490
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 8 cut(s) 8, 63, 119, 245, 272, 568, 616, 714
CviQI GTAC 4 cut(s) 123, 224, 477, 490
DdeI CTNAG 2 cut(s) 126, 288
DpnI GATC 2 cut(s) 140, 701
DpnII GATC 2 cut(s) 138, 699
Ecl136II GAGCTC 3 cut(s) 284, 455, 506
Eco130I CCWWGG 2 cut(s) 88, 99
Eco24I GRGCYC 3 cut(s) 286, 457, 508
Eco47I GGWCC 1 cut(s) 66
Eco53kI GAGCTC 3 cut(s) 284, 455, 506
Eco57I CTGAAG 3 cut(s) 501, 584, 691
Eco88I CYCGRG 1 cut(s) 551
EcoICRI GAGCTC 3 cut(s) 284, 455, 506
EcoRII CCWGG 1 cut(s) 398
EcoT14I CCWWGG 2 cut(s) 88, 99
EcoT22I ATGCAT 1 cut(s) 539
EcoT38I GRGCYC 3 cut(s) 286, 457, 508
ErhI CCWWGG 2 cut(s) 88, 99
FaeI CATG 8 cut(s) 11, 66, 122, 248, 275, 571, 619, 717
FalI AAGNNNNNCTT 2 cut(s) 28, 60
FaqI GGGAC 2 cut(s) 161, 280
FatI CATG 8 cut(s) 7, 62, 118, 244, 271, 567, 615, 713
FauI CCCGC 1 cut(s) 731
Fnu4HI GCNGC 3 cut(s) 516, 596, 727
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 3 cut(s) 286, 457, 508
Fsp4HI GCNGC 3 cut(s) 516, 596, 727
FspBI CTAG 1 cut(s) 380
GluI GCNGC 3 cut(s) 516, 596, 727
HaeIII GGCC 4 cut(s) 425, 486, 562, 712
Hin1II CATG 8 cut(s) 11, 66, 122, 248, 275, 571, 619, 717
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 5 cut(s) 22, 41, 176, 605, 630
HphI GGTGA 2 cut(s) 245, 623
Hpy166II GTNNAC 1 cut(s) 395
Hpy188I TCNGA 2 cut(s) 202, 592
Hpy188III TCNNGA 6 cut(s) 146, 287, 366, 380, 602, 627
Hpy8I GTNNAC 1 cut(s) 395
HpyAV CCTTC 3 cut(s) 30, 211, 476
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 5 cut(s) 110, 302, 318, 527, 537
HpyF10VI GCNNNNNNNGC 4 cut(s) 512, 524, 687, 702
HpyF3I CTNAG 2 cut(s) 126, 288
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 8 cut(s) 11, 66, 122, 248, 275, 571, 619, 717
Kzo9I GATC 2 cut(s) 138, 699
LmnI GCTCC 3 cut(s) 281, 289, 503
Lsp1109I GCAGC 2 cut(s) 527, 607
LweI GCATC 3 cut(s) 460, 524, 596
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 2 cut(s) 580, 611
MalI GATC 2 cut(s) 140, 701
MboI GATC 2 cut(s) 138, 699
MboII GAAGA 3 cut(s) 91, 107, 381
MhlI GDGCHC 3 cut(s) 286, 457, 508
MluCI AATT 3 cut(s) 409, 462, 667
MlyI GAGTC 1 cut(s) 639
MnlI CCTC 5 cut(s) 15, 121, 568, 613, 657
Mph1103I ATGCAT 1 cut(s) 539
MroXI GAANNNNTTC 1 cut(s) 40
MseI TTAA 3 cut(s) 153, 251, 510
MslI CAYNNNNRTG 3 cut(s) 30, 61, 276
MspA1I CMGCKG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 400
Mva1269I GAATGC 1 cut(s) 675
MvaI CCWGG 1 cut(s) 400
MwoI GCNNNNNNNGC 4 cut(s) 512, 524, 687, 702
NdeII GATC 2 cut(s) 138, 699
NlaIII CATG 8 cut(s) 11, 66, 122, 248, 275, 571, 619, 717
NlaIV GGNNCC 1 cut(s) 68
NmuCI GTSAC 2 cut(s) 580, 611
NsiI ATGCAT 1 cut(s) 539
PasI CCCWGGG 1 cut(s) 399
PctI GAATGC 1 cut(s) 675
PdmI GAANNNNTTC 1 cut(s) 40
PfeI GAWTC 4 cut(s) 22, 41, 176, 605
PkrI GCNGC 3 cut(s) 517, 597, 728
PleI GAGTC 1 cut(s) 638
PpsI GAGTC 1 cut(s) 638
Psp124BI GAGCTC 3 cut(s) 286, 457, 508
Psp6I CCWGG 1 cut(s) 398
PspGI CCWGG 1 cut(s) 398
PspN4I GGNNCC 1 cut(s) 68
PspPI GGNCC 2 cut(s) 66, 423
PstI CTGCAG 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 4 cut(s) 124, 225, 478, 491
RsaNI GTAC 4 cut(s) 123, 224, 477, 490
RseI CAYNNNNRTG 3 cut(s) 30, 61, 276
SacI GAGCTC 3 cut(s) 286, 457, 508
SaqAI TTAA 3 cut(s) 153, 251, 510
SatI GCNGC 3 cut(s) 516, 596, 727
Sau3AI GATC 2 cut(s) 138, 699
Sau96I GGNCC 2 cut(s) 66, 423
ScaI AGTACT 1 cut(s) 491
SchI GAGTC 1 cut(s) 639
ScrFI CCNGG 1 cut(s) 400
SduI GDGCHC 3 cut(s) 286, 457, 508
SfaNI GCATC 3 cut(s) 460, 524, 596
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 1 cut(s) 66
SmiMI CAYNNNNRTG 3 cut(s) 30, 61, 276
Sse9I AATT 3 cut(s) 409, 462, 667
SsiI CCGC 1 cut(s) 724
SspI AATATT 1 cut(s) 166
SspMI CTAG 1 cut(s) 380
SstI GAGCTC 3 cut(s) 286, 457, 508
StyD4I CCNGG 1 cut(s) 398
StyI CCWWGG 2 cut(s) 88, 99
TaaI ACNGT 1 cut(s) 392
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 174, 532
TasI AATT 3 cut(s) 409, 462, 667
TatI WGTACW 1 cut(s) 489
TfiI GAWTC 4 cut(s) 22, 41, 176, 605
Tru1I TTAA 3 cut(s) 153, 251, 510
Tru9I TTAA 3 cut(s) 153, 251, 510
TseFI GTSAC 2 cut(s) 580, 611
TseI GCWGC 3 cut(s) 515, 595, 726
Tsp45I GTSAC 2 cut(s) 580, 611
TspDTI ATGAA 6 cut(s) 14, 51, 92, 107, 252, 584
VpaK11BI GGWCC 1 cut(s) 66
XapI RAATTY 1 cut(s) 462
XbaI TCTAGA 1 cut(s) 379
XmnI GAANNNNTTC 1 cut(s) 40
XspI CTAG 1 cut(s) 380
ZrmI AGTACT 1 cut(s) 491
Zsp2I ATGCAT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.