pycom15g25870

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010963
Physical Location & Seq
Forward (+)
20537527 .. 20539748
2222 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1164 bp
ATGGTGGTGCGCTGGGTGTTGCAGTGCGATGGTGGTGGTCTGGTAGCGAAAGAGAAAATAAGGGCGACAGTCAGAACTTGCCTCAGAGAGAATTCGACAAGGGAGGTGCGGAGTAATCACCAGCGACGCACTCCAGCTACTGGATCTACACCCCACAACCATGACTGGGGAGAAATGGGGGACTCTGCACAAACTTCATTCTCTCTCTCCAGCCTTCTCTGCCAAGAAGATGAAACTTGTCTGAACCAGTTGAAAGACGAATCGAACTCATCCGTAGAATTCAAGCCATGCTTTCTTTTCGATAACGATGATGAATATGTCGAAAACTTGGTTCAGAAAGAAGCTCATTGCTTTGGATCCAATGGGTTAATGGATTGCTCTGCCTCTGGCATGAGCTGGTTGAAAACTGCTCGACTGGATGCCATTGATTGGATTTTCAATGCATGGGCAGATTTTGGGTTCCAGTTGCAAACAGCTTACTTATCAGTGACTTACTTTGATAGGTTTCTTTCAAAACTATCCATTGATGATGAGAAATTGTGGGCTATTAGATTGTTATCAGTGGCATGTTTATCCTTGGCTGCTAAGATGGAAGAATGCAAAATACCAACTTTATCAGAGTTTTCGGTTTCGGATTATGATTTTGAAAGCAAAGTCATTCAAAGAATGGAGCTTTTGGTGTTGAATACATTGGAATGGAAGTTGGGTTCAATCACTCCTTTTGCTTATCTGCATTACTTCATCAATAAGTTTTGTGCTGATCAAGCAAGGCCAGAAGGACTAGTTTCTAATGCTATAAAACTTATTATGGCAATGGCAAAAGAAATTGATTTAATGGATACTCGGCCGTCGATTATTGCAGCTGCTGCAGTTTTAGCAGCATTTGATGGTCGATTAACTAGAAAGATTCTGGAGATTAAGATGAATGTGATCTCATTCTTGCAGTCCCAAGATTATGAACATATATATTCCTGCTATAATTTTATGCAGGGAGTGGTGGAAAGAAAAGCTAAGACACCAGCGCCCAAGTTTTCAATTTCGCCTTCATCAAGCTCGATGGAAGTGCTTGAAACTTCATCATTTGGCACTAAGAGAAGGCTTACATTCAGCGACTCTTCTGATCAAAGTTGCCCAACCAAGAAGGCTTACGATAGAGGTTTTTGA

Protein Analysis

388

Amino Acids

43.72

Weight (kDa)

5.54

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 107 - 235 2.3e-25 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37630 AT4G37630 AT4G37630
fragaria_vesca FvH4_1g17530 FvH4_1g17530
malus_domestica MD02G1184500.v1.1 MD15G1295800.v1.1
prunus_persica Prupe.6G222000_v2.0.a1 Prupe.6G222000_v2.0.a1
pyrus_communis pycom15g25870
rosa_chinensis RchiOBHm_Chr2g0107771
rosa_laevigata RLG00000017614
rosa_multiflora Rmu_sc0006215.1_g000005
rosa_roxburghii Rroxscaffold_2G00135970
rosa_rugosa Rorug02G0147400
rosa_samantha Rh2AG197500 Rh2BG209800 Rh2CG202200 Rh2DG205300
rosa_wichuraiana Rw2G015580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 140, 429
AciI CCGC 1 cut(s) 109
AclWI GGATC 3 cut(s) 151, 351, 364
AcoI YGGCCR 1 cut(s) 845
AcsI RAATTY 2 cut(s) 91, 278
AfiI CCNNNNNNNGG 3 cut(s) 140, 166, 429
AhlI ACTAGT 1 cut(s) 781
AloI GAACNNNNNNTCC 2 cut(s) 691, 723
AluBI AGCT 8 cut(s) 137, 344, 396, 476, 673, 863, 1010, 1053
AluI AGCT 8 cut(s) 137, 344, 396, 476, 673, 863, 1010, 1053
AlwI GGATC 3 cut(s) 151, 351, 364
AlwNI CAGNNNCTG 2 cut(s) 140, 866
AoxI GGCC 2 cut(s) 770, 845
ApeKI GCWGC 5 cut(s) 581, 860, 863, 866, 878
ApoI RAATTY 2 cut(s) 91, 278
AspLEI GCGC 2 cut(s) 12, 1024
AsuHPI GGTGA 1 cut(s) 110
BamHI GGATCC 1 cut(s) 356
BbvI GCAGC 5 cut(s) 568, 850, 853, 872, 890
BccI CCATC 4 cut(s) 23, 583, 881, 1051
BceAI ACGGC 1 cut(s) 832
BcgI CGANNNNNNTGC 2 cut(s) 1045, 1079
BciVI GTATCC 1 cut(s) 832
BclI TGATCA 2 cut(s) 760, 1120
BcuI ACTAGT 1 cut(s) 781
BfaI CTAG 2 cut(s) 782, 900
BfmI CTRYAG 1 cut(s) 867
BfoI RGCGCY 1 cut(s) 1025
BfuI GTATCC 1 cut(s) 832
BisI GCNGC 5 cut(s) 582, 861, 864, 867, 879
BlsI GCNGC 5 cut(s) 583, 862, 865, 868, 880
BmiI GGNNCC 2 cut(s) 358, 461
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 409
BmuI ACTGGG 1 cut(s) 175
BpmI CTGGAG 3 cut(s) 117, 193, 932
BsaBI GATNNNNATC 1 cut(s) 556
BsaJI CCNNGG 1 cut(s) 576
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 166, 429
Bse1I ACTGG 5 cut(s) 145, 170, 247, 420, 463
Bse3DI GCAATG 2 cut(s) 346, 819
Bse8I GATNNNNATC 1 cut(s) 556
BseDI CCNNGG 1 cut(s) 576
BseGI GGATG 2 cut(s) 269, 424
BseJI GATNNNNATC 1 cut(s) 556
BseLI CCNNNNNNNGG 3 cut(s) 140, 166, 429
BseMI GCAATG 2 cut(s) 346, 819
BseMII CTCAG 1 cut(s) 97
BseNI ACTGG 5 cut(s) 145, 170, 247, 420, 463
BseX3I CGGCCG 1 cut(s) 845
BseXI GCAGC 5 cut(s) 568, 850, 853, 872, 890
BseYI CCCAGC 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 848
BshFI GGCC 2 cut(s) 772, 847
BsiEI CGRYCG 1 cut(s) 848
BslFI GGGAC 2 cut(s) 194, 931
BslI CCNNNNNNNGG 3 cut(s) 140, 166, 429
BsmFI GGGAC 2 cut(s) 194, 931
BsmI GAATGC 1 cut(s) 602
BsnI GGCC 2 cut(s) 772, 847
Bsp143I GATC 5 cut(s) 143, 356, 760, 930, 1120
BspACI CCGC 1 cut(s) 109
BspANI GGCC 2 cut(s) 772, 847
BspCNI CTCAG 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 358, 461
BspMAI CTGCAG 1 cut(s) 871
BspPI GGATC 3 cut(s) 151, 351, 364
BsrDI GCAATG 2 cut(s) 346, 819
BsrI ACTGG 5 cut(s) 145, 170, 247, 420, 463
BssECI CCNNGG 1 cut(s) 576
BssMI GATC 5 cut(s) 143, 356, 760, 930, 1120
BssT1I CCWWGG 1 cut(s) 576
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 1120
BstAPI GCANNNNNTGC 1 cut(s) 866
BstDEI CTNAG 4 cut(s) 83, 585, 1011, 1089
BstF5I GGATG 2 cut(s) 269, 424
BstH2I RGCGCY 1 cut(s) 1025
BstHHI GCGC 2 cut(s) 12, 1024
BstKTI GATC 5 cut(s) 146, 359, 763, 933, 1123
BstMBI GATC 5 cut(s) 143, 356, 760, 930, 1120
BstMCI CGRYCG 1 cut(s) 848
BstMWI GCNNNNNNNGC 4 cut(s) 219, 764, 866, 875
BstNSI RCATGY 1 cut(s) 570
BstSFI CTRYAG 1 cut(s) 867
BstV1I GCAGC 5 cut(s) 568, 850, 853, 872, 890
BstX2I RGATCY 2 cut(s) 143, 356
BstYI RGATCY 2 cut(s) 143, 356
BstZI CGGCCG 1 cut(s) 845
BsuI GTATCC 1 cut(s) 832
BsuRI GGCC 2 cut(s) 772, 847
BtgZI GCGATG 1 cut(s) 42
BtsCI GGATG 2 cut(s) 269, 424
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 3 cut(s) 29, 492, 567
CaiI CAGNNNCTG 2 cut(s) 140, 866
CfoI GCGC 2 cut(s) 12, 1024
CseI GACGC 1 cut(s) 135
CviAII CATG 5 cut(s) 161, 288, 391, 444, 567
DdeI CTNAG 4 cut(s) 83, 585, 1011, 1089
DpnI GATC 5 cut(s) 145, 358, 762, 932, 1122
DpnII GATC 5 cut(s) 143, 356, 760, 930, 1120
EaeI YGGCCR 1 cut(s) 845
EagI CGGCCG 1 cut(s) 845
Eam1104I CTCTTC 1 cut(s) 1120
EarI CTCTTC 1 cut(s) 1120
EclXI CGGCCG 1 cut(s) 845
Eco130I CCWWGG 1 cut(s) 576
Eco52I CGGCCG 1 cut(s) 845
EcoRI GAATTC 2 cut(s) 91, 278
EcoT14I CCWWGG 1 cut(s) 576
EcoT22I ATGCAT 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 576
FaeI CATG 5 cut(s) 164, 291, 394, 447, 570
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 2 cut(s) 194, 931
FatI CATG 5 cut(s) 160, 287, 390, 443, 566
FbaI TGATCA 2 cut(s) 760, 1120
Fnu4HI GCNGC 5 cut(s) 582, 861, 864, 867, 879
FokI GGATG 2 cut(s) 256, 431
Fsp4HI GCNGC 5 cut(s) 582, 861, 864, 867, 879
FspBI CTAG 2 cut(s) 782, 900
GlaI GCGC 2 cut(s) 11, 1023
GluI GCNGC 5 cut(s) 582, 861, 864, 867, 879
GsaI CCCAGC 1 cut(s) 16
GsuI CTGGAG 3 cut(s) 117, 193, 932
HaeII RGCGCY 1 cut(s) 1025
HaeIII GGCC 2 cut(s) 772, 847
HgaI GACGC 1 cut(s) 135
HhaI GCGC 2 cut(s) 12, 1024
Hin1II CATG 5 cut(s) 164, 291, 394, 447, 570
Hin6I GCGC 2 cut(s) 10, 1022
HinP1I GCGC 2 cut(s) 10, 1022
HinfI GANTC 4 cut(s) 182, 260, 907, 1112
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 7 cut(s) 74, 86, 243, 336, 619, 634, 1120
Hpy188III TCNNGA 1 cut(s) 911
Hpy99I CGWCG 2 cut(s) 129, 853
HpyAV CCTTC 5 cut(s) 224, 770, 1053, 1089, 1135
HpyCH4III ACNGT 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 4 cut(s) 219, 764, 866, 875
HpyF3I CTNAG 4 cut(s) 83, 585, 1011, 1089
Hsp92II CATG 5 cut(s) 164, 291, 394, 447, 570
HspAI GCGC 2 cut(s) 10, 1022
Ksp22I TGATCA 2 cut(s) 760, 1120
Kzo9I GATC 5 cut(s) 143, 356, 760, 930, 1120
LmnI GCTCC 1 cut(s) 670
Lsp1109I GCAGC 5 cut(s) 568, 850, 853, 872, 890
LweI GCATC 1 cut(s) 409
MaeI CTAG 2 cut(s) 782, 900
MaeIII GTNAC 1 cut(s) 487
MalI GATC 5 cut(s) 145, 358, 762, 932, 1122
MboI GATC 5 cut(s) 143, 356, 760, 930, 1120
MboII GAAGA 3 cut(s) 239, 605, 1107
MflI RGATCY 2 cut(s) 143, 356
MluCI AATT 6 cut(s) 91, 278, 536, 825, 979, 1035
MlyI GAGTC 2 cut(s) 176, 1106
MnlI CCTC 4 cut(s) 92, 97, 394, 1148
Mph1103I ATGCAT 1 cut(s) 445
MseI TTAA 4 cut(s) 368, 833, 896, 918
MslI CAYNNNNRTG 2 cut(s) 159, 694
MspA1I CMGCKG 1 cut(s) 863
Mva1269I GAATGC 1 cut(s) 602
MwoI GCNNNNNNNGC 4 cut(s) 219, 764, 866, 875
NdeII GATC 5 cut(s) 143, 356, 760, 930, 1120
NlaIII CATG 5 cut(s) 164, 291, 394, 447, 570
NlaIV GGNNCC 2 cut(s) 358, 461
NmeAIII GCCGAG 1 cut(s) 823
NmuCI GTSAC 1 cut(s) 487
NsiI ATGCAT 1 cut(s) 445
NspI RCATGY 1 cut(s) 570
PctI GAATGC 1 cut(s) 602
PfeI GAWTC 2 cut(s) 260, 907
PflMI CCANNNNNTGG 2 cut(s) 140, 429
PkrI GCNGC 5 cut(s) 583, 862, 865, 868, 880
PleI GAGTC 2 cut(s) 176, 1106
PpsI GAGTC 2 cut(s) 176, 1106
PspFI CCCAGC 1 cut(s) 12
PspN4I GGNNCC 2 cut(s) 358, 461
PstI CTGCAG 1 cut(s) 871
PstNI CAGNNNCTG 2 cut(s) 140, 866
PsuI RGATCY 2 cut(s) 143, 356
PvuII CAGCTG 1 cut(s) 863
RseI CAYNNNNRTG 2 cut(s) 159, 694
SaqAI TTAA 4 cut(s) 368, 833, 896, 918
SatI GCNGC 5 cut(s) 582, 861, 864, 867, 879
Sau3AI GATC 5 cut(s) 143, 356, 760, 930, 1120
SchI GAGTC 2 cut(s) 176, 1106
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 1 cut(s) 867
SmiMI CAYNNNNRTG 2 cut(s) 159, 694
SpeI ACTAGT 1 cut(s) 781
Sse9I AATT 6 cut(s) 91, 278, 536, 825, 979, 1035
SsiI CCGC 1 cut(s) 109
SspMI CTAG 2 cut(s) 782, 900
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 8 cut(s) 95, 263, 300, 321, 412, 851, 892, 1055
TasI AATT 6 cut(s) 91, 278, 536, 825, 979, 1035
TfiI GAWTC 2 cut(s) 260, 907
Tru1I TTAA 4 cut(s) 368, 833, 896, 918
Tru9I TTAA 4 cut(s) 368, 833, 896, 918
TscAI CASTG 3 cut(s) 29, 492, 567
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 5 cut(s) 581, 860, 863, 866, 878
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 8 cut(s) 186, 246, 327, 730, 938, 972, 1035, 1065
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 3 cut(s) 29, 492, 567
Van91I CCANNNNNTGG 2 cut(s) 140, 429
XapI RAATTY 2 cut(s) 91, 278
XceI RCATGY 1 cut(s) 570
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XspI CTAG 2 cut(s) 782, 900
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.