Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009644

Physical Location & Seq

Genomic Coordinates Forward (+)

21212316 .. 21212642

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAGTACCAGTGACTCTAAGGTTGTTCTAGTCACAGGTTGTGCCAAGGGCGGAATTGACTATGAATACTGCAAGGCTTTTGTCGAGCAGAAATGCCGCGTCTTCGGCATCGATTTCTCACAGCGCATGAACGACATAGACCTAAGTCTTTCGAACAACATCGACACACTCGAGCTTGATGTGTCTTCGGACGAAAGTGTCGCATTGGCTATAAAGACAATTATTTCCAAGTACGGCCGCATTGACGTACTTGCTAATAATGCCGGAATAGGAAGCACGGGACCTCTCGCGGAGCTTCCGTTGGACACTATACGAAAGGTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000140 GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009056 GO:0009058 GO:0009987 GO:0012505 GO:0016042 GO:0016298 GO:0016491 GO:0016614 GO:0016616 GO:0016787 GO:0016788 GO:0019433 GO:0019637 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046461 GO:0046464 GO:0046473 GO:0046474 GO:0046486 GO:0046503 GO:0052689 GO:0055114 GO:0071704 GO:0090407 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

109

Amino Acids

11.72

Weight (kDa)

4.65

Isoelectric Point (pI)

17.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	7 - 107	7.1e-17	short chain dehydrogenase
adh_short_C2	PF13561	14 - 107	1.1e-11	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18260
malus_domestica	MD02G1189900.v1.1
prunus_persica	Prupe.6G216500_v2.0.a1
pyrus_communis	pycom15g26350
rosa_chinensis	RchiOBHm_Chr2g0108801 RchiOBHm_Chr2g0108811 RchiOBHm_Chr2g0108821
rosa_laevigata	RLG00000017691
rosa_multiflora	Rmu_sc0003973.1_g000018 Rmu_sc0003973.1_g000021
rosa_roxburghii	Rroxscaffold_2G00134790
rosa_rugosa	Rorug02G0156200
rosa_samantha	Rh2AG206400 Rh2AG206500 Rh2BG217700 Rh2CG209400 Rh2CG209500 Rh2CG209600 Rh2DG212700 Rh2DG212800
rosa_wichuraiana	Rw2G016410 Rw2G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	197
AccII	CGCG	2 cut(s)	99, 290
AciI	CCGC	4 cut(s)	51, 97, 238, 290
AcoI	YGGCCR	1 cut(s)	235
AfaI	GTAC	3 cut(s)	7, 233, 249
AluBI	AGCT	2 cut(s)	175, 295
AluI	AGCT	2 cut(s)	175, 295
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	281
AsuII	TTCGAA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	281
BbsI	GAAGAC	2 cut(s)	94, 177
BceAI	ACGGC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	29
BisI	GCNGC	2 cut(s)	97, 238
BlsI	GCNGC	2 cut(s)	98, 239
Bme18I	GGWCC	1 cut(s)	281
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	282
BmsI	GCATC	1 cut(s)	117
BoxI	GACNNNNGTC	1 cut(s)	144
BpiI	GAAGAC	2 cut(s)	94, 177
Bpu14I	TTCGAA	1 cut(s)	152
Bsa29I	ATCGAT	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bse1I	ACTGG	1 cut(s)	9
BseCI	ATCGAT	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	9
BseX3I	CGGCCG	1 cut(s)	235
Bsh1236I	CGCG	2 cut(s)	99, 290
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	237
BshVI	ATCGAT	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	152
BspACI	CCGC	4 cut(s)	51, 97, 238, 290
BspANI	GGCC	1 cut(s)	237
BspDI	ATCGAT	1 cut(s)	111
BspFNI	CGCG	2 cut(s)	99, 290
BspLI	GGNNCC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	45
BstBI	TTCGAA	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	18, 143
BstFNI	CGCG	2 cut(s)	99, 290
BstHHI	GCGC	1 cut(s)	126
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 260
BstPAI	GACNNNNGTC	1 cut(s)	144
BstUI	CGCG	2 cut(s)	99, 290
BstV2I	GAAGAC	2 cut(s)	94, 177
BstZI	CGGCCG	1 cut(s)	235
Bsu15I	ATCGAT	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	237
BsuTUI	ATCGAT	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	16
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	281
ClaI	ATCGAT	1 cut(s)	111
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	3 cut(s)	6, 232, 248
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	5 cut(s)	77, 175, 209, 237, 295
CviKI_1	RGCY	5 cut(s)	77, 175, 209, 237, 295
CviQI	GTAC	3 cut(s)	6, 232, 248
DdeI	CTNAG	2 cut(s)	18, 143
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	1 cut(s)	235
EagI	CGGCCG	1 cut(s)	235
EciI	GGCGGA	1 cut(s)	66
EclXI	CGGCCG	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	281
Eco52I	CGGCCG	1 cut(s)	235
Eco88I	CYCGRG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	130
FaiI	YATR	5 cut(s)	63, 128, 137, 212, 311
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	97, 238
Fsp4HI	GCNGC	2 cut(s)	97, 238
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	2 cut(s)	97, 238
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	130
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	1 cut(s)	264
Hpy188I	TCNGA	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 260
HpyF3I	CTNAG	2 cut(s)	18, 143
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	130
HspAI	GCGC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	3 cut(s)	21, 22, 277
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	11, 31
MboII	GAAGA	2 cut(s)	94, 177
MluCI	AATT	2 cut(s)	54, 219
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	1 cut(s)	294
MspI	CCGG	1 cut(s)	264
MvnI	CGCG	2 cut(s)	99, 290
MwoI	GCNNNNNNNGC	2 cut(s)	105, 260
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	2 cut(s)	11, 31
NspV	TTCGAA	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	98, 239
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PpuMI	RGGWCCY	1 cut(s)	281
PshAI	GACNNNNGTC	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	281
PspPPI	RGGWCCY	1 cut(s)	281
PspXI	VCTCGAGB	1 cut(s)	170
RsaI	GTAC	3 cut(s)	7, 233, 249
RsaNI	GTAC	3 cut(s)	6, 232, 248
SatI	GCNGC	2 cut(s)	97, 238
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	1 cut(s)	8
SetI	ASST	8 cut(s)	24, 40, 144, 177, 249, 286, 297, 321
SfaNI	GCATC	1 cut(s)	117
Sfr274I	CTCGAG	1 cut(s)	170
SfuI	TTCGAA	1 cut(s)	152
SinI	GGWCC	1 cut(s)	281
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	54, 219
SsiI	CCGC	4 cut(s)	51, 97, 238, 290
SspMI	CTAG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	45
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	5 cut(s)	84, 111, 152, 162, 171
TasI	AATT	2 cut(s)	54, 219
TauI	GCSGC	2 cut(s)	99, 240
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	2 cut(s)	11, 31
Tsp45I	GTSAC	2 cut(s)	11, 31
TspDTI	ATGAA	2 cut(s)	78, 143
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	281
XhoI	CTCGAG	1 cut(s)	170
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.