Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008297

Physical Location & Seq

Genomic Coordinates Forward (+)

22203685 .. 22204319

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAATTCCAGGTCTAAAGCTCAAGAAGTGTTCGATCTGATCGACAAAGAAATGAAGCAGACGTTACAAAAGCTACAATCGTCTAATGGTTGTAAATCTCAGGTTGATTGTAAGTCTTCTCTTGCTGAACTTAAAGTCAAGATAAAAGATATAGCTCCACTCACTCAGTTGGAAAGCATGCAGAAGGAACTGAACCTAGCACTTAGCAAGTATCCAAAGATTCTGGAGAAATCCCTCATTCCTGATATTACCAAGGCTTATAGAAACATTGACATTGATACCCACACAACTAATGCGATTATTGGCGGCCATTTCTATCAGCAGGGCCTATTCGAAGTTGGCGACTATTTTATAAGTGAGACTGAGGAATCAGAAGCTGCGGCTGCATTGAAATCTCAGTTTCGGGAATTATTTCGGATAGTTGAGGCAATGAAACATCGGAATCTGGAGCCAACATGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

155

Amino Acids

17.52

Weight (kDa)

6.43

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22690 AT2G22690 AT4G37880
fragaria_vesca	FvH4_1g18890 FvH4_1g18890 FvH4_1g18890
malus_domestica	MD01G1046000.v1.1 MD01G1046100.v1.1 MD15G1305600.v1.1
prunus_persica	Prupe.6G210700_v2.0.a1
pyrus_communis	pycom01g07220 pycom15g26920 pycom15g26940
rosa_laevigata	RLG00000017766
rosa_multiflora	Rmu_sc0008299.1_g000002
rosa_roxburghii	Rroxscaffold_2G00133920
rosa_rugosa	Rorug02G0163000 Rorug02G0163100
rosa_samantha	Rh2AG215200 Rh2BG225300 Rh2CG217100 Rh2DG220700
rosa_wichuraiana	Rw2G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	353
AciI	CCGC	2 cut(s)	306, 380
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	4
AflIII	ACRYGT	1 cut(s)	455
AgsI	TTSAA	1 cut(s)	391
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	4 cut(s)	20, 73, 155, 377
AluI	AGCT	4 cut(s)	20, 73, 155, 377
Alw26I	GTCTC	1 cut(s)	353
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	2 cut(s)	307, 325
ApeKI	GCWGC	2 cut(s)	377, 383
ApoI	RAATTY	1 cut(s)	4
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	325
AsuII	TTCGAA	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	364, 370
BciT130I	CCWGG	1 cut(s)	10
BciVI	GTATCC	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	222
BisI	GCNGC	4 cut(s)	307, 378, 381, 384
BlsI	GCNGC	4 cut(s)	308, 379, 382, 385
Bme1390I	CCNGG	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	1 cut(s)	10
BpiI	GAAGAC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	245
Bpu14I	TTCGAA	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	4 cut(s)	113, 179, 354, 410
BseXI	GCAGC	2 cut(s)	364, 370
BshFI	GGCC	2 cut(s)	309, 327
BsmAI	GTCTC	1 cut(s)	353
BsnI	GGCC	2 cut(s)	309, 327
Bsp119I	TTCGAA	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	34, 39
BspACI	CCGC	2 cut(s)	306, 380
BspANI	GGCC	2 cut(s)	309, 327
BspCNI	CTCAG	4 cut(s)	112, 178, 355, 409
BspLI	GGNNCC	1 cut(s)	450
BspT104I	TTCGAA	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	435
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	2 cut(s)	34, 39
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	10
BstBI	TTCGAA	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	5 cut(s)	99, 165, 203, 363, 396
BstKTI	GATC	2 cut(s)	37, 42
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	2 cut(s)	34, 39
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	1 cut(s)	10
BstNSI	RCATGY	2 cut(s)	181, 459
BstSCI	CCNGG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	364, 370
BstV2I	GAAGAC	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	309, 327
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	1 cut(s)	179
CaiI	CAGNNNCTG	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	325
CviAII	CATG	2 cut(s)	178, 456
CviJI	RGCY	9 cut(s)	20, 73, 155, 257, 309, 327, 377, 383, 451
CviKI_1	RGCY	9 cut(s)	20, 73, 155, 257, 309, 327, 377, 383, 451
DdeI	CTNAG	5 cut(s)	99, 165, 203, 363, 396
DpnI	GATC	2 cut(s)	36, 41
DpnII	GATC	2 cut(s)	34, 39
EaeI	YGGCCR	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	2 cut(s)	181, 459
FaiI	YATR	5 cut(s)	152, 179, 261, 353, 457
FatI	CATG	2 cut(s)	177, 455
Fnu4HI	GCNGC	4 cut(s)	307, 378, 381, 384
Fsp4HI	GCNGC	4 cut(s)	307, 378, 381, 384
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	4 cut(s)	307, 378, 381, 384
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	2 cut(s)	309, 327
Hin1II	CATG	2 cut(s)	181, 459
HinfI	GANTC	3 cut(s)	220, 368, 442
Hpy188I	TCNGA	4 cut(s)	39, 373, 417, 441
Hpy188III	TCNNGA	6 cut(s)	23, 139, 224, 242, 404, 446
HpyAV	CCTTC	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	2 cut(s)	181, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	5 cut(s)	99, 165, 203, 363, 396
HpySE526I	ACGT	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	181, 459
Kzo9I	GATC	2 cut(s)	34, 39
LmnI	GCTCC	2 cut(s)	160, 448
LpnPI	CCDG	6 cut(s)	22, 86, 209, 255, 308, 431
Lsp1109I	GCAGC	2 cut(s)	364, 370
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	2 cut(s)	63, 458
MalI	GATC	2 cut(s)	36, 41
MboI	GATC	2 cut(s)	34, 39
MboII	GAAGA	1 cut(s)	108
MluCI	AATT	2 cut(s)	4, 407
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	3 cut(s)	245, 358, 418
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeII	GATC	2 cut(s)	34, 39
NlaIII	CATG	2 cut(s)	181, 459
NlaIV	GGNNCC	1 cut(s)	450
NmuCI	GTSAC	1 cut(s)	458
NspI	RCATGY	2 cut(s)	181, 459
NspV	TTCGAA	1 cut(s)	333
PaeI	GCATGC	1 cut(s)	181
PciI	ACATGT	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 339
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	3 cut(s)	220, 368, 442
PkrI	GCNGC	4 cut(s)	308, 379, 382, 385
PscI	ACATGT	1 cut(s)	455
PsiI	TTATAA	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	4 cut(s)	307, 378, 381, 384
Sau3AI	GATC	2 cut(s)	34, 39
Sau96I	GGNCC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	10
SetI	ASST	8 cut(s)	14, 22, 65, 75, 105, 157, 198, 379
SfuI	TTCGAA	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	2 cut(s)	4, 407
SsiI	CCGC	2 cut(s)	306, 380
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	252
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	33, 42, 333
TasI	AATT	2 cut(s)	4, 407
TauI	GCSGC	2 cut(s)	309, 383
TfiI	GAWTC	3 cut(s)	220, 368, 442
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	2 cut(s)	377, 383
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	3 cut(s)	17, 68, 446
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	2 cut(s)	181, 459
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.