Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007815

Physical Location & Seq

Genomic Coordinates Reverse (-)

22447349 .. 22448272

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCAGTCTGACGCGGTGGTTAGTGCTGGACCTGCAGTTTTCATATCCCCTACTGGCCCTAATCCGATTATGGTTCAGGAACTCCAGCATCCAGAGATCGTCACCCTGCCAATCTCCATACTGATCCTCAGTCTCCTGAATCTGCAGCAGAACGGCAAAATGCTGCAGATCCTGCAAGAGATGGTAATATACTCTCTGGCTGTGCCAGGAGAGGACAATTTGTTTTCTAGCTCCATCAGTGAATATGGCGGTGCCAGAATTTTCTCAGATATTTTGTTCTTTATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0001655 GO:0001775 GO:0001822 GO:0002020 GO:0002253 GO:0002376 GO:0002429 GO:0002474 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006915 GO:0006950 GO:0006974 GO:0006996 GO:0007029 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007130 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0007276 GO:0007283 GO:0007399 GO:0007417 GO:0007420 GO:0008104 GO:0008150 GO:0008152 GO:0008219 GO:0008630 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010256 GO:0010498 GO:0010604 GO:0010605 GO:0010941 GO:0012501 GO:0016020 GO:0016043 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019222 GO:0019538 GO:0019882 GO:0019899 GO:0019941 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023052 GO:0030101 GO:0030162 GO:0030163 GO:0030323 GO:0030324 GO:0030433 GO:0030544 GO:0031072 GO:0031323 GO:0031324 GO:0031325 GO:0031329 GO:0031330 GO:0031331 GO:0031593 GO:0031625 GO:0031647 GO:0031974 GO:0031981 GO:0031982 GO:0032268 GO:0032269 GO:0032270 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034613 GO:0034976 GO:0035295 GO:0035556 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036506 GO:0042176 GO:0042177 GO:0042221 GO:0042771 GO:0042802 GO:0042981 GO:0043021 GO:0043022 GO:0043066 GO:0043067 GO:0043069 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0045048 GO:0045132 GO:0045143 GO:0045184 GO:0045321 GO:0045732 GO:0045861 GO:0045862 GO:0045995 GO:0046649 GO:0048002 GO:0048232 GO:0048285 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050821 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051205 GO:0051234 GO:0051239 GO:0051246 GO:0051247 GO:0051248 GO:0051276 GO:0051321 GO:0051603 GO:0051641 GO:0051704 GO:0051716 GO:0051787 GO:0051788 GO:0060255 GO:0060322 GO:0060541 GO:0060548 GO:0061024 GO:0061136 GO:0061857 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0070059 GO:0070062 GO:0070192 GO:0070193 GO:0070628 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0071816 GO:0071818 GO:0071840 GO:0072001 GO:0072331 GO:0072332 GO:0072379 GO:0072657 GO:0080090 GO:0080134 GO:0080135 GO:0090150 GO:0097190 GO:0097193 GO:0098813 GO:0140013 GO:0140030 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901799 GO:1901800 GO:1903046 GO:1903050 GO:1903051 GO:1903052 GO:1903362 GO:1903363 GO:1903364 GO:1903561 GO:1904292 GO:1904294 GO:1904378 GO:1905897 GO:1905898 GO:1990381 GO:2000026 GO:2000058 GO:2000059

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

97

Amino Acids

10.47

Weight (kDa)

4.12

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25270
fragaria_vesca	FvH4_1g01820 FvH4_1g01820 FvH4_1g01820
malus_domestica	MD02G1016100.v1.1 MD15G1160800.v1.1
prunus_persica	Prupe.7G256000_v2.0.a1 Prupe.7G256000_v2.0.a1
pyrus_communis	pycom02g01410 pycom15g14460 pycom15g27170 pycom15g27180
rosa_chinensis	RchiOBHm_Chr2g0086801
rosa_laevigata	RLG00000015794
rosa_multiflora	Rmu_sc0005498.1_g000010 Rmu_sc0033277.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154170
rosa_rugosa	Rorug01G0469400 Rorug01G0469400
rosa_samantha	Rh2AG022100 Rh2BG022300 Rh2CG022900 Rh2DG022600
rosa_wichuraiana	Rw2G001770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	40
AccB1I	GGYRCC	1 cut(s)	251
AccII	CGCG	1 cut(s)	14
AciI	CCGC	2 cut(s)	14, 249
AclWI	GGATC	2 cut(s)	118, 163
AcsI	RAATTY	1 cut(s)	258
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	1 cut(s)	231
AluI	AGCT	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	2 cut(s)	118, 163
AlwNI	CAGNNNCTG	1 cut(s)	172
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	145, 163
ApoI	RAATTY	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	29, 56
AsuHPI	GGTGA	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	150, 157
BccI	CCATC	2 cut(s)	175, 242
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	3 cut(s)	33, 143, 164
BfuAI	ACCTGC	1 cut(s)	40
BisI	GCNGC	2 cut(s)	146, 164
BlsI	GCNGC	2 cut(s)	147, 165
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	29, 56
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	88
BseMII	CTCAG	2 cut(s)	142, 279
BseNI	ACTGG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	150, 157
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	96, 123, 168
BspACI	CCGC	2 cut(s)	14, 249
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	2 cut(s)	141, 278
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	253
BspMAI	CTGCAG	3 cut(s)	37, 147, 168
BspMI	ACCTGC	1 cut(s)	40
BspPI	GGATC	2 cut(s)	118, 163
BspT107I	GGYRCC	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	58
BssMI	GATC	3 cut(s)	96, 123, 168
Bst2UI	CCWGG	1 cut(s)	207
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	128, 265
BstF5I	GGATG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	3 cut(s)	99, 126, 171
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	3 cut(s)	96, 123, 168
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 172
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	3 cut(s)	33, 143, 164
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	150, 157
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	244
BveI	ACCTGC	1 cut(s)	40
CaiI	CAGNNNCTG	1 cut(s)	172
Cfr13I	GGNCC	2 cut(s)	29, 56
CseI	GACGC	1 cut(s)	20
CviJI	RGCY	3 cut(s)	57, 200, 231
CviKI_1	RGCY	3 cut(s)	57, 200, 231
DdeI	CTNAG	2 cut(s)	128, 265
DpnI	GATC	3 cut(s)	98, 125, 170
DpnII	GATC	3 cut(s)	96, 123, 168
Eco47I	GGWCC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	205
FaiI	YATR	6 cut(s)	44, 71, 119, 190, 246, 284
Fnu4HI	GCNGC	2 cut(s)	146, 164
FokI	GGATG	1 cut(s)	75
Fsp4HI	GCNGC	2 cut(s)	146, 164
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	2 cut(s)	146, 164
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	57
HgaI	GACGC	1 cut(s)	20
HinfI	GANTC	1 cut(s)	139
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	10, 66, 268
Hpy188III	TCNNGA	3 cut(s)	77, 92, 136
HpyCH4V	TGCA	5 cut(s)	4, 35, 145, 166, 175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 172
HpyF3I	CTNAG	2 cut(s)	128, 265
Kzo9I	GATC	3 cut(s)	96, 123, 168
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	2 cut(s)	150, 157
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	3 cut(s)	98, 125, 170
MboI	GATC	3 cut(s)	96, 123, 168
MflI	RGATCY	1 cut(s)	168
MluCI	AATT	2 cut(s)	217, 258
MnlI	CCTC	2 cut(s)	137, 205
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	32, 172
NdeII	GATC	3 cut(s)	96, 123, 168
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	147, 165
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	29, 56
PstI	CTGCAG	3 cut(s)	37, 147, 168
PstNI	CAGNNNCTG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	168
SatI	GCNGC	2 cut(s)	146, 164
Sau3AI	GATC	3 cut(s)	96, 123, 168
Sau96I	GGNCC	2 cut(s)	29, 56
ScrFI	CCNGG	1 cut(s)	207
SetI	ASST	2 cut(s)	34, 233
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	3 cut(s)	33, 143, 164
SinI	GGWCC	1 cut(s)	29
Sse9I	AATT	2 cut(s)	217, 258
SsiI	CCGC	2 cut(s)	14, 249
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	205
TasI	AATT	2 cut(s)	217, 258
TfiI	GAWTC	1 cut(s)	139
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	145, 163
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	258
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.