Rw2G001770

Large proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0007815
Physical Location & Seq
Reverse (-)
1448933 .. 1454051
5119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G001770.1

Sequence Viewer

Length: 2148 bp
ATGGGAAGTAATGGTGCTGAACATATTCCAATGAGTGAGCAGATGGATGGGTGTGAACCCACGATTGAGATAAAAATAAAGACATTGGATTCACAAACCTATACTCTCAAAGTGGATAAAGAGATGCCAGTTCCTGCTTTGAAAGAACAGATTGCCTCTGTTACTGGTGTGCTATCAGAGCAACAGCGGCTAATATGCAGAGGAAAAGTTCTTAAGGATGATCAGCTTCTCTCTGCCTATCATGTTGAGGATGGCCACACCTTACATTTGGTTGTCAGACAACCTATTCCACCTTCATCCGAGGGACTACTGAATCATTCAGCAACTGATCCTGCTTCTAGTACAAGCCGTGGTCGATCGAGTGTCTTCATTGAAAGTTTCAGTGTGCCTGTTCAGGGGGATGGAGTTCCACCAGATTTTAGTCGGTTCCTCTCTGCTGTTCTCGGCTCTGTAGGAATCCCAAGTATTGCGAGTGGCAGTGAAGGCGTTGACGTCACGGATCCGGGGACACAGAGGCCAGAAAGGACATCAGGTTTGAGCGGTTTGTTTGATTTATCCCAACTTCTATCGGAGCAAGCTACCACAAGGGCTCAATCTGATGGATCAAATGGCACTTTTGGTCACTCACCACCATTTTCTTTGGGGAATCTGCCACCTCTGGTGATTCCTGATTCGTTGAATACTTTATCTCGATATCTGAGTCATATAAGGCACGACTTTCTGGCCATTGTCAGAGATGGAGGACGCAGTCAAGAAGCTATTCATAGGAATGACGAAAGTTCCAATTCCTCGTCAGGTCCCGGAATAAGACGAGAGGGGATCCCTTCACCTGCATCATTGGCAGAAGTCATCCGTACTGCTCGACTATTACTCATTGAACAAGCTGGAGAATCTCTACTTCGACTTGCAAGCCAGTTGGAGAATCAAGCGAATGTGACGGATCCCTCGGCACGGATGAGAACCCAAGCCAGTGCATTGAGAACTGGACATTTGTATCATAATTTAGGTGCCTGTTTACTTGAACTTGGCCGTACTATGATGACATTGCAAATGGGCCAAACACCGTCTGATGCTGTGGTTAATGCTGGACCTGCAGTTTTCATATCCCCGACTGGTCCTAACCCTATAATGGTTCAGCCTCTTCCTTTTCAATCAGGATTGAGTTTAGGTGCCATCCCCATGGGAGCTCTACAGCCTGGTTCTGGTCTACTTAATGGACTTGGTTCTGGTTTTCATCCAAGGCGTATTGATATACAGATACGAAGAGGTTCACCAACGACCACTGCCAATGTCAATCGAGAGGAGCATCGTGATCTTCAGCAACCTTCACAAAGAAACTCAGCACCAAGTTCAGGTGGTGAAAATCCTGCCAATCAAACACCGCCAAGTGTCTCAGATGGTTCAGCTTTCGCTGGAGATTCGGGTGTGAGGGTAGTGCCAGTCAGGACCGTAGTTGCCAGTCGCCTACCATCTGAGTCTGCTGGTAGTTCGATTGGGTTATACTATCCATTCCTCGGAAGGCTTCAACATGTAGCTTCTGGAAATGTGAACGGTGAGCGAGGATCTCAAGCATCTGGTGATCATCATCCTGCCGGCCTTAACACTGATCGGCAGTCTTCTGAAAACATTACAGATCCTGCAAGAGACGGATCAACTCCCAATATAAGGCAACCAGATCCCCCCACTGGACGAAGTGTTAGTATCAGTTTTTTATCATCTGGTGGGACCCAAAACGATCAAGAATCTGAGAGGCAGGTCCCCAGTGGTATTTTAAATTTACTTAGGGCTCTCTTTCCTGGTGGTGAAATTCACGTAGAAGATGGCAGTGTACAAGGAATGAATTCTAGTTCTGTATCAGATCAGGCAAGGACTTCTAATGGTGTCGCTGTTGCTCCAGAAGCTGAACCAAGGGTTAGCGAAGAAGGCATATTTTTGTCTAATTTACTTCATCAAGTAATGCCATTGATATCTCAAGCAGCAACTAGAGAGCCAGGTCTTGTACCTGCAGAAGCGGAAAACTCTTCTGAGCACACAATGGCCCAAGGCTCTTCCACCGTGGCAGAAAACGCCAATGTTGGGACATCGCGTCGACATAGTCAGAGTGATTGTGATGAGCCTCCTAGTTCAAAACGTCAAAAGAAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000280 GO:0001655 GO:0001775 GO:0001822 GO:0002020 GO:0002253 GO:0002376 GO:0002429 GO:0002474 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006915 GO:0006950 GO:0006974 GO:0006996 GO:0007029 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007130 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0007276 GO:0007283 GO:0007399 GO:0007417 GO:0007420 GO:0008104 GO:0008150 GO:0008152 GO:0008219 GO:0008630 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010256 GO:0010498 GO:0010604 GO:0010605 GO:0010941 GO:0012501 GO:0016020 GO:0016043 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019222 GO:0019538 GO:0019882 GO:0019899 GO:0019941 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023052 GO:0030101 GO:0030162 GO:0030163 GO:0030323 GO:0030324 GO:0030433 GO:0030544 GO:0031072 GO:0031323 GO:0031324 GO:0031325 GO:0031329 GO:0031330 GO:0031331 GO:0031593 GO:0031625 GO:0031647 GO:0031974 GO:0031981 GO:0031982 GO:0032268 GO:0032269 GO:0032270 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034613 GO:0034976 GO:0035295 GO:0035556 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036506 GO:0042176 GO:0042177 GO:0042221 GO:0042771 GO:0042802 GO:0042981 GO:0043021 GO:0043022 GO:0043066 GO:0043067 GO:0043069 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0045048 GO:0045132 GO:0045143 GO:0045184 GO:0045321 GO:0045732 GO:0045861 GO:0045862 GO:0045995 GO:0046649 GO:0048002 GO:0048232 GO:0048285 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050821 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051205 GO:0051234 GO:0051239 GO:0051246 GO:0051247 GO:0051248 GO:0051276 GO:0051321 GO:0051603 GO:0051641 GO:0051704 GO:0051716 GO:0051787 GO:0051788 GO:0060255 GO:0060322 GO:0060541 GO:0060548 GO:0061024 GO:0061136 GO:0061857 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0070059 GO:0070062 GO:0070192 GO:0070193 GO:0070628 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0071816 GO:0071818 GO:0071840 GO:0072001 GO:0072331 GO:0072332 GO:0072379 GO:0072657 GO:0080090 GO:0080134 GO:0080135 GO:0090150 GO:0097190 GO:0097193 GO:0098813 GO:0140013 GO:0140030 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901799 GO:1901800 GO:1903046 GO:1903050 GO:1903051 GO:1903052 GO:1903362 GO:1903363 GO:1903364 GO:1903561 GO:1904292 GO:1904294 GO:1904378 GO:1905897 GO:1905898 GO:1990381 GO:2000026 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

715

Amino Acids

75.5

Weight (kDa)

5.59

Isoelectric Point (pI)

57.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 22 - 92 3.8e-08 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 24 - 94 1.7e-20 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 838
AatII GACGTC 1 cut(s) 495
Acc36I ACCTGC 4 cut(s) 838, 1099, 1744, 2011
AccB1I GGYRCC 2 cut(s) 1007, 1169
AccBSI CCGCTC 1 cut(s) 540
AccI GTMKAC 2 cut(s) 1207, 2089
AccII CGCG 1 cut(s) 2086
AciI CCGC 4 cut(s) 187, 540, 1382, 2012
AcoI YGGCCR 3 cut(s) 253, 723, 1027
AcsI RAATTY 3 cut(s) 1774, 1806, 1840
AcuI CTGAAG 1 cut(s) 1301
AcyI GRCGYC 1 cut(s) 492
AfaI GTAC 5 cut(s) 343, 856, 1033, 1830, 2001
AfiI CCNNNNNNNGG 9 cut(s) 395, 951, 1129, 1202, 1352, 1514, 1665, 1685, 2076
AflII CTTAAG 1 cut(s) 212
AflIII ACRYGT 1 cut(s) 1528
AgsI TTSAA 8 cut(s) 142, 374, 679, 878, 1022, 1151, 1526, 2127
AhdI GACNNNNNGTC 1 cut(s) 2085
AjnI CCWGG 3 cut(s) 1195, 1795, 1990
AluBI AGCT 8 cut(s) 226, 578, 758, 884, 1187, 1406, 1535, 1901
AluI AGCT 8 cut(s) 226, 578, 758, 884, 1187, 1406, 1535, 1901
Alw21I GWGCWC 2 cut(s) 1189, 2031
Alw26I GTCTC 2 cut(s) 1396, 1638
AlwNI CAGNNNCTG 4 cut(s) 134, 326, 1637, 1901
AoxI GGCC 7 cut(s) 253, 515, 723, 1027, 1054, 1594, 2037
ApeKI GCWGC 1 cut(s) 1976
ApoI RAATTY 3 cut(s) 1774, 1806, 1840
ArsI GACNNNNNNTTYG 2 cut(s) 517, 549
Asp700I GAANNNNTTC 4 cut(s) 24, 759, 1267, 1840
AspS9I GGNCC 8 cut(s) 797, 1054, 1088, 1115, 1446, 1725, 1756, 2038
AsuC2I CCSGG 2 cut(s) 504, 801
AsuHPI GGTGA 8 cut(s) 618, 673, 819, 1263, 1370, 1565, 1589, 1814
AvaII GGWCC 6 cut(s) 797, 1088, 1115, 1446, 1725, 1756
BaeI ACNNNNGTAYC 2 cut(s) 977, 1010
BalI TGGCCA 2 cut(s) 255, 725
BamHI GGATCC 3 cut(s) 499, 819, 940
BanI GGYRCC 2 cut(s) 1007, 1169
BanII GRGCYC 3 cut(s) 592, 1189, 1789
BbsI GAAGAC 2 cut(s) 358, 1608
Bbv12I GWGCWC 2 cut(s) 1189, 2031
BbvI GCAGC 1 cut(s) 1988
BceAI ACGGC 2 cut(s) 333, 1014
BciT130I CCWGG 3 cut(s) 1197, 1797, 1992
BclI TGATCA 2 cut(s) 220, 1579
BcnI CCSGG 2 cut(s) 504, 801
BcoDI GTCTC 2 cut(s) 1396, 1638
BfaI CTAG 4 cut(s) 339, 1845, 1983, 2121
BfmI CTRYAG 4 cut(s) 450, 1092, 1190, 2004
BfrI CTTAAG 1 cut(s) 212
BfuAI ACCTGC 4 cut(s) 838, 1099, 1744, 2011
BisI GCNGC 2 cut(s) 188, 1977
BlsI GCNGC 2 cut(s) 189, 1978
Bme1390I CCNGG 5 cut(s) 504, 801, 1197, 1797, 1992
Bme18I GGWCC 6 cut(s) 797, 1088, 1115, 1446, 1725, 1756
BmeRI GACNNNNNGTC 1 cut(s) 2085
BmgT120I GGNCC 8 cut(s) 797, 1054, 1088, 1115, 1446, 1725, 1756, 2038
BmrFI CCNGG 5 cut(s) 504, 801, 1197, 1797, 1992
BmrI ACTGGG 1 cut(s) 1755
BmsI GCATC 5 cut(s) 114, 842, 1060, 1315, 1580
BmuI ACTGGG 1 cut(s) 1755
BpiI GAAGAC 2 cut(s) 358, 1608
BpmI CTGGAG 3 cut(s) 906, 1434, 1878
BpuEI CTTGAG 2 cut(s) 1551, 1956
BpuMI CCSGG 2 cut(s) 504, 801
BsaAI YACGTR 1 cut(s) 1813
BsaBI GATNNNNATC 1 cut(s) 1584
BsaHI GRCGYC 1 cut(s) 492
Bsc4I CCNNNNNNNGG 9 cut(s) 395, 951, 1129, 1202, 1352, 1514, 1665, 1685, 2076
Bse118I RCCGGY 1 cut(s) 1592
Bse3DI GCAATG 1 cut(s) 1043
Bse8I GATNNNNATC 1 cut(s) 1584
BseBI CCWGG 3 cut(s) 1197, 1797, 1992
BseJI GATNNNNATC 1 cut(s) 1584
BseLI CCNNNNNNNGG 9 cut(s) 395, 951, 1129, 1202, 1352, 1514, 1665, 1685, 2076
BseMI GCAATG 1 cut(s) 1043
BseMII CTCAG 6 cut(s) 689, 1353, 1407, 1464, 1737, 2016
BseRI GAGGAG 1 cut(s) 1316
BseXI GCAGC 1 cut(s) 1988
Bsh1236I CGCG 1 cut(s) 2086
Bsh1285I CGRYCG 1 cut(s) 359
BshFI GGCC 7 cut(s) 255, 517, 725, 1029, 1056, 1596, 2039
BshNI GGYRCC 2 cut(s) 1007, 1169
BsiEI CGRYCG 1 cut(s) 359
BsiHKAI GWGCWC 2 cut(s) 1189, 2031
BsiSI CCGG 3 cut(s) 503, 801, 1593
BslFI GGGAC 6 cut(s) 318, 520, 783, 1738, 1742, 2092
BslI CCNNNNNNNGG 9 cut(s) 395, 951, 1129, 1202, 1352, 1514, 1665, 1685, 2076
BsmAI GTCTC 2 cut(s) 1396, 1638
BsmBI CGTCTC 1 cut(s) 1638
BsmFI GGGAC 6 cut(s) 318, 520, 783, 1738, 1742, 2092
BsnI GGCC 7 cut(s) 255, 517, 725, 1029, 1056, 1596, 2039
Bsp1286I GDGCHC 4 cut(s) 592, 1189, 1789, 2031
Bsp1407I TGTACA 1 cut(s) 1828
Bsp19I CCATGG 1 cut(s) 1179
BspACI CCGC 4 cut(s) 187, 540, 1382, 2012
BspANI GGCC 7 cut(s) 255, 517, 725, 1029, 1056, 1596, 2039
BspCNI CTCAG 6 cut(s) 690, 1352, 1406, 1465, 1738, 2017
BspFNI CGCG 1 cut(s) 2086
BspMAI CTGCAG 2 cut(s) 1096, 2008
BspMI ACCTGC 4 cut(s) 838, 1099, 1744, 2011
BspQI GCTCTTC 1 cut(s) 2053
BspT107I GGYRCC 2 cut(s) 1007, 1169
BspTI CTTAAG 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 540
BsrDI GCAATG 1 cut(s) 1043
BsrFI RCCGGY 1 cut(s) 1592
BsrGI TGTACA 1 cut(s) 1828
BssAI RCCGGY 1 cut(s) 1592
BssNI GRCGYC 1 cut(s) 492
BssT1I CCWWGG 4 cut(s) 1179, 1238, 1907, 2041
Bst2UI CCWGG 3 cut(s) 1197, 1797, 1992
Bst4CI ACNGT 4 cut(s) 1065, 1450, 1553, 2056
Bst6I CTCTTC 4 cut(s) 1146, 1258, 2026, 2053
BstACI GRCGYC 1 cut(s) 492
BstAFI CTTAAG 1 cut(s) 212
BstAUI TGTACA 1 cut(s) 1828
BstBAI YACGTR 1 cut(s) 1813
BstC8I GCNNGC 3 cut(s) 576, 910, 1594
BstDEI CTNAG 7 cut(s) 698, 1339, 1393, 1473, 1746, 1781, 2025
BstDSI CCRYGG 3 cut(s) 349, 1179, 2055
BstFNI CGCG 1 cut(s) 2086
BstMAI GTCTC 2 cut(s) 1396, 1638
BstMCI CGRYCG 1 cut(s) 359
BstMWI GCNNNNNNNGC 8 cut(s) 178, 187, 483, 839, 1091, 1898, 1923, 2066
BstNI CCWGG 3 cut(s) 1197, 1797, 1992
BstNSI RCATGY 1 cut(s) 1532
BstSCI CCNGG 5 cut(s) 502, 799, 1195, 1795, 1990
BstSFI CTRYAG 4 cut(s) 450, 1092, 1190, 2004
BstUI CGCG 1 cut(s) 2086
BstV1I GCAGC 1 cut(s) 1988
BstV2I GAAGAC 2 cut(s) 358, 1608
BstX2I RGATCY 6 cut(s) 499, 819, 940, 1562, 1633, 1675
BstXI CCANNNNNNTGG 1 cut(s) 1180
BstYI RGATCY 6 cut(s) 499, 819, 940, 1562, 1633, 1675
BsuRI GGCC 7 cut(s) 255, 517, 725, 1029, 1056, 1596, 2039
BtgI CCRYGG 3 cut(s) 349, 1179, 2055
BtgZI GCGATG 1 cut(s) 2067
BtsI GCAGTG 3 cut(s) 484, 1281, 1831
BtsIMutI CAGTG 8 cut(s) 388, 484, 976, 1281, 1602, 1683, 1768, 1831
BveI ACCTGC 4 cut(s) 838, 1099, 1744, 2011
Cac8I GCNNGC 3 cut(s) 576, 910, 1594
CaiI CAGNNNCTG 4 cut(s) 134, 326, 1637, 1901
Cfr10I RCCGGY 1 cut(s) 1592
Cfr13I GGNCC 8 cut(s) 797, 1054, 1088, 1115, 1446, 1725, 1756, 2038
CseI GACGC 2 cut(s) 753, 2075
Csp6I GTAC 5 cut(s) 342, 855, 1032, 1829, 2000
CviAII CATG 3 cut(s) 242, 1180, 1529
CviQI GTAC 5 cut(s) 342, 855, 1032, 1829, 2000
DdeI CTNAG 7 cut(s) 698, 1339, 1393, 1473, 1746, 1781, 2025
DraI TTTAAA 1 cut(s) 1773
DriI GACNNNNNGTC 1 cut(s) 2085
EaeI YGGCCR 3 cut(s) 253, 723, 1027
Eam1104I CTCTTC 4 cut(s) 1146, 1258, 2026, 2053
Eam1105I GACNNNNNGTC 1 cut(s) 2085
EarI CTCTTC 4 cut(s) 1146, 1258, 2026, 2053
Ecl136II GAGCTC 1 cut(s) 1187
Eco130I CCWWGG 4 cut(s) 1179, 1238, 1907, 2041
Eco24I GRGCYC 3 cut(s) 592, 1189, 1789
Eco32I GATATC 2 cut(s) 695, 1968
Eco47I GGWCC 6 cut(s) 797, 1088, 1115, 1446, 1725, 1756
Eco53kI GAGCTC 1 cut(s) 1187
Eco57I CTGAAG 1 cut(s) 1301
EcoICRI GAGCTC 1 cut(s) 1187
EcoO109I RGGNCCY 3 cut(s) 797, 1725, 1756
EcoRI GAATTC 1 cut(s) 1840
EcoRII CCWGG 3 cut(s) 1195, 1795, 1990
EcoRV GATATC 2 cut(s) 695, 1968
EcoT14I CCWWGG 4 cut(s) 1179, 1238, 1907, 2041
EcoT38I GRGCYC 3 cut(s) 592, 1189, 1789
ErhI CCWWGG 4 cut(s) 1179, 1238, 1907, 2041
Esp3I CGTCTC 1 cut(s) 1638
FaeI CATG 3 cut(s) 245, 1183, 1532
FaqI GGGAC 6 cut(s) 318, 520, 783, 1738, 1742, 2092
FatI CATG 3 cut(s) 241, 1179, 1528
FbaI TGATCA 2 cut(s) 220, 1579
FblI GTMKAC 2 cut(s) 1207, 2089
Fnu4HI GCNGC 2 cut(s) 188, 1977
FriOI GRGCYC 3 cut(s) 592, 1189, 1789
Fsp4HI GCNGC 2 cut(s) 188, 1977
FspBI CTAG 4 cut(s) 339, 1845, 1983, 2121
GluI GCNGC 2 cut(s) 188, 1977
GsuI CTGGAG 3 cut(s) 906, 1434, 1878
HaeIII GGCC 7 cut(s) 255, 517, 725, 1029, 1056, 1596, 2039
HapII CCGG 3 cut(s) 503, 801, 1593
HgaI GACGC 2 cut(s) 753, 2075
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 3 cut(s) 245, 1183, 1532
HincII GTYRAC 2 cut(s) 490, 2090
HindII GTYRAC 2 cut(s) 490, 2090
HpaII CCGG 3 cut(s) 503, 801, 1593
HphI GGTGA 8 cut(s) 618, 673, 819, 1263, 1370, 1565, 1589, 1814
Hpy166II GTNNAC 8 cut(s) 56, 490, 1016, 1208, 1271, 1549, 1829, 2090
Hpy8I GTNNAC 8 cut(s) 56, 490, 1016, 1208, 1271, 1549, 1829, 2090
Hpy99I CGWCG 1 cut(s) 2091
HpyAV CCTTC 7 cut(s) 303, 476, 834, 1335, 1512, 1916, 2134
HpyCH4III ACNGT 4 cut(s) 1065, 1450, 1553, 2056
HpyCH4IV ACGT 3 cut(s) 492, 1812, 2131
HpyCH4V TGCA 8 cut(s) 198, 833, 908, 974, 1048, 1094, 1640, 2006
HpyF10VI GCNNNNNNNGC 8 cut(s) 178, 187, 483, 839, 1091, 1898, 1923, 2066
HpyF3I CTNAG 7 cut(s) 698, 1339, 1393, 1473, 1746, 1781, 2025
HpySE526I ACGT 3 cut(s) 492, 1812, 2131
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 3 cut(s) 245, 1183, 1532
KflI GGGWCCC 1 cut(s) 1725
KroI GCCGGC 1 cut(s) 1592
KroNI GCCGGC 1 cut(s) 1594
Ksp22I TGATCA 2 cut(s) 220, 1579
LguI GCTCTTC 1 cut(s) 2053
LmnI GCTCC 4 cut(s) 571, 1184, 1303, 1897
Lsp1109I GCAGC 1 cut(s) 1988
LweI GCATC 5 cut(s) 114, 842, 1060, 1315, 1580
MaeI CTAG 4 cut(s) 339, 1845, 1983, 2121
MaeII ACGT 3 cut(s) 492, 1812, 2131
MaeIII GTNAC 4 cut(s) 160, 493, 620, 934
MbiI CCGCTC 1 cut(s) 540
MboII GAAGA 9 cut(s) 358, 1133, 1275, 1307, 1608, 1829, 1931, 2013, 2040
MflI RGATCY 6 cut(s) 499, 819, 940, 1562, 1633, 1675
MhlI GDGCHC 4 cut(s) 592, 1189, 1789, 2031
MlsI TGGCCA 2 cut(s) 255, 725
MluCI AATT 6 cut(s) 784, 1000, 1774, 1806, 1840, 1939
MluNI TGGCCA 2 cut(s) 255, 725
MlyI GAGTC 2 cut(s) 709, 1484
MmeI TCCRAC 1 cut(s) 897
Mox20I TGGCCA 2 cut(s) 255, 725
MroNI GCCGGC 1 cut(s) 1592
MroXI GAANNNNTTC 4 cut(s) 24, 759, 1267, 1840
MscI TGGCCA 2 cut(s) 255, 725
MseI TTAA 5 cut(s) 213, 1080, 1212, 1599, 1772
MslI CAYNNNNRTG 2 cut(s) 768, 1178
Msp20I TGGCCA 2 cut(s) 255, 725
MspA1I CMGCKG 1 cut(s) 187
MspCI CTTAAG 1 cut(s) 212
MspI CCGG 3 cut(s) 503, 801, 1593
MspR9I CCNGG 5 cut(s) 504, 801, 1197, 1797, 1992
MvaI CCWGG 3 cut(s) 1197, 1797, 1992
MvnI CGCG 1 cut(s) 2086
MwoI GCNNNNNNNGC 8 cut(s) 178, 187, 483, 839, 1091, 1898, 1923, 2066
NaeI GCCGGC 1 cut(s) 1594
NciI CCSGG 2 cut(s) 504, 801
NcoI CCATGG 1 cut(s) 1179
NgoMIV GCCGGC 1 cut(s) 1592
NlaIII CATG 3 cut(s) 245, 1183, 1532
NmeAIII GCCGAG 2 cut(s) 423, 926
NmuCI GTSAC 3 cut(s) 493, 620, 934
NspI RCATGY 1 cut(s) 1532
PaqCI CACCTGC 1 cut(s) 838
PciI ACATGT 1 cut(s) 1528
PciSI GCTCTTC 1 cut(s) 2053
PdiI GCCGGC 1 cut(s) 1594
PdmI GAANNNNTTC 4 cut(s) 24, 759, 1267, 1840
PflFI GACNNNGTC 2 cut(s) 747, 2094
PfoI TCCNGGA 1 cut(s) 799
PkrI GCNGC 2 cut(s) 189, 1978
Ple19I CGATCG 1 cut(s) 359
PleI GAGTC 2 cut(s) 708, 1483
PpsI GAGTC 2 cut(s) 708, 1483
Ppu21I YACGTR 1 cut(s) 1813
PpuMI RGGWCCY 3 cut(s) 797, 1725, 1756
PscI ACATGT 1 cut(s) 1528
Psp124BI GAGCTC 1 cut(s) 1189
Psp5II RGGWCCY 3 cut(s) 797, 1725, 1756
Psp6I CCWGG 3 cut(s) 1195, 1795, 1990
PspGI CCWGG 3 cut(s) 1195, 1795, 1990
PspPI GGNCC 8 cut(s) 797, 1054, 1088, 1115, 1446, 1725, 1756, 2038
PspPPI RGGWCCY 3 cut(s) 797, 1725, 1756
PstI CTGCAG 2 cut(s) 1096, 2008
PstNI CAGNNNCTG 4 cut(s) 134, 326, 1637, 1901
PsuI RGATCY 6 cut(s) 499, 819, 940, 1562, 1633, 1675
PsyI GACNNNGTC 2 cut(s) 747, 2094
PvuI CGATCG 1 cut(s) 359
RsaI GTAC 5 cut(s) 343, 856, 1033, 1830, 2001
RsaNI GTAC 5 cut(s) 342, 855, 1032, 1829, 2000
RseI CAYNNNNRTG 2 cut(s) 768, 1178
SacI GAGCTC 1 cut(s) 1189
SalI GTCGAC 1 cut(s) 2088
SapI GCTCTTC 1 cut(s) 2053
SaqAI TTAA 5 cut(s) 213, 1080, 1212, 1599, 1772
SatI GCNGC 2 cut(s) 188, 1977
Sau96I GGNCC 8 cut(s) 797, 1054, 1088, 1115, 1446, 1725, 1756, 2038
SchI GAGTC 2 cut(s) 709, 1484
ScrFI CCNGG 5 cut(s) 504, 801, 1197, 1797, 1992
SduI GDGCHC 4 cut(s) 592, 1189, 1789, 2031
SfaNI GCATC 5 cut(s) 114, 842, 1060, 1315, 1580
SfcI CTRYAG 4 cut(s) 450, 1092, 1190, 2004
SinI GGWCC 6 cut(s) 797, 1088, 1115, 1446, 1725, 1756
SmiMI CAYNNNNRTG 2 cut(s) 768, 1178
SmlI CTYRAG 3 cut(s) 212, 1566, 1971
SmoI CTYRAG 3 cut(s) 212, 1566, 1971
Sse9I AATT 6 cut(s) 784, 1000, 1774, 1806, 1840, 1939
SsiI CCGC 4 cut(s) 187, 540, 1382, 2012
SspMI CTAG 4 cut(s) 339, 1845, 1983, 2121
SstI GAGCTC 1 cut(s) 1189
StyD4I CCNGG 5 cut(s) 502, 799, 1195, 1795, 1990
StyI CCWWGG 4 cut(s) 1179, 1238, 1907, 2041
TaaI ACNGT 4 cut(s) 1065, 1450, 1553, 2056
TaiI ACGT 3 cut(s) 495, 1815, 2134
TaqI TCGA 8 cut(s) 355, 359, 691, 862, 901, 1297, 1490, 2089
TasI AATT 6 cut(s) 784, 1000, 1774, 1806, 1840, 1939
TatI WGTACW 2 cut(s) 341, 1828
TauI GCSGC 1 cut(s) 190
Tru1I TTAA 5 cut(s) 213, 1080, 1212, 1599, 1772
Tru9I TTAA 5 cut(s) 213, 1080, 1212, 1599, 1772
TscAI CASTG 8 cut(s) 388, 484, 976, 1288, 1609, 1690, 1768, 1831
TseFI GTSAC 3 cut(s) 493, 620, 934
TseI GCWGC 1 cut(s) 1976
Tsp45I GTSAC 3 cut(s) 493, 620, 934
TspDTI ATGAA 7 cut(s) 285, 358, 752, 1090, 1223, 1853, 1937
TspGWI ACGGA 5 cut(s) 512, 842, 953, 967, 1662
TspRI CASTG 8 cut(s) 388, 484, 976, 1288, 1609, 1690, 1768, 1831
Tth111I GACNNNGTC 2 cut(s) 747, 2094
Vha464I CTTAAG 1 cut(s) 212
VpaK11BI GGWCC 6 cut(s) 797, 1088, 1115, 1446, 1725, 1756
XapI RAATTY 3 cut(s) 1774, 1806, 1840
XceI RCATGY 1 cut(s) 1532
XmiI GTMKAC 2 cut(s) 1207, 2089
XmnI GAANNNNTTC 4 cut(s) 24, 759, 1267, 1840
XspI CTAG 4 cut(s) 339, 1845, 1983, 2121
ZraI GACGTC 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.