RLG00000015794

Large proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0007815
Physical Location & Seq
Reverse (-)
1471659 .. 1476724
5066 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015794

Sequence Viewer

Length: 2118 bp
ATGAGTGAGCAGATGGATGGGTGTGAACCCACGATTGAGATAAAAATAAAGACATTGGATTCACAAACCTATACTCTCAAAGTGGATAAAGAGATGCCAGTTCCTGCTTTGAAAGAACAGATTGCCTCTGTTACTGGTGTGCTATCAGAGCAACAGCGGCTAATATGCAGAGGAAAAGTTCTTAAGGATGATCAGCTTCTCTCTGCCTATCATGTTGAGGATGGCCACACCTTACATTTGGTTGTCAGACAACCTATTCCACCGTCATCCGAGGGACTACTGAATCATTCAGCAACTGATCCTGCTTCAAGTACAAGCCGTGGTCGATCGAGTGTCTTCATTGAAAGTTTCAGTGTGCCTGTTCAGGGGGATGGAGTTCCACCAGATTTTAGTCGGTTCCTCTCTGCTGTTCTCGGCTCTGTTGGAATCCCAAACATTGCAAGTGGCAGTGAAGGCGTTGATGTCACGGATCCTGGGACACAGAGGCCAGAAAGGACATCAGGTTTGAGCGGTTTGTTTGATTTATCCCAACTTCTATCTGAGCAAGCTACCACAAGGGCTCAATCTGATGGATCAAATGGCACTTTTGGTCACTCAGCACCATTTTCTTTGGGGAATCTGCCACCTCTGGTGATTCCTGATTCGTTGAATACTTTATCTCGATATCTGAGTCATATAAGGCGCGACTTTTTGGCCATTGCCAGAGATGGAGGACGCAGTCAAGAAGCTATTCATAGGAATGACGAAAGTTCCAATTCCTCGTCGGGTCCCGGAATAAGACGAGAGGGGATCCCCTCACCTGCATCATTGGCAGAAGTCATCCGTACTGCTAGACTATTACTCATTGAACAAGCTGGAGAATCTCTACTTCGACTTGCAAGCCAGTTGGAGAATCAAGCGAATGTGACGGATCCCTCAGCACGGATGAGAACCCAAGCCAGTGCATTGAGAACTGGAGCTTTGTATCATAATTTAGGTGCCTGTTTACTTGAACTTGGCCGTACTATGATGACATTGCAAATGGGCCAAACACCGTCTGATGCAGTGGTTAATGCTGGACCTGCAGTTTTCATATCGCCGACTGGTCCTAACCCTATAATGGTTCAGCCTCTTCCTTTTCAATCAGGAATGAGTTTAGGTGCCATCCCCATGGGAGCTCTGCAGTCTGGTTCTGGTCTACTTAATGGACTTGGTTCTGGTTTTCATCCAAGGCGTATTGATATACAGATACGAAGAGGTTCACCAACAACCACTGCCAATGTCAATCGAGAGGAGCATCGCGATCTTCAGCAACCTTCACAAAGAAACTCAGCACCAAGTTCAGGTGGTGAAAATCCTGCCAATCAAACACCGCCAAGTGTCTCAGATGGTTCAGCTTTCGCTGGAGATTCGGGTGTGAGGGTAGTGCCAGTCAGGACCGTAGTTGCCAGTCGCCTACCATCTGAGTCTGCTGGTAGTTCGATTGGGTTATACTATCCATTTCTCGGAAGGCTTCAACATGTAGCTTCTGGAAATGTGAACGGTGAGCGAGGATCTCAAGCACCTGGTGACCATCATTCTGCCGGCCTTCACACTGATCAGCAGTCTTCCGAAAACATTACAGATCCTGCAAGAGACGGATCAACTCCCAATATAAGGCAACCAGATCCCCCCACTGGACGAAGTGTTAGTATTAGCTTTTTATCATCTGGTGGGACCCAAAACGATCAAGAATCTGAGAGGCAGGTCCCAAGCGGTATTTTAAATTTACTTAGGGCTCTCTTTCCTGGTGGTGAAATTCACGTAGAAGATGGCAGTGTACAAGGAATGAATTCTAGTTCTGTATCAGATCAGGCAAGGACTTCTAATGGTGTCGCTGTTGCTCCAGAAGCTGAACCAAGGGTTAGCGAAGAAGGAATATTTTTATCTAATTTACTTCATCAAGTAATGCCATTGATATCTCAAGCAGCAACTAGAGAGCCAGGTCTTGTACCTGCAGAAGTGGAAAACTCTTCTGAGCACACAATGGCCCAAGACTCTTCCACCGTGGCGGAAAACTCCAATGTTGGGACATCGCGTCGACATAGTCAGAGTGATTGTGATGAGCCTCCTAGTTCAAAACGTCAAAAGAAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000280 GO:0001655 GO:0001775 GO:0001822 GO:0002020 GO:0002253 GO:0002376 GO:0002429 GO:0002474 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006915 GO:0006950 GO:0006974 GO:0006996 GO:0007029 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007130 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0007276 GO:0007283 GO:0007399 GO:0007417 GO:0007420 GO:0008104 GO:0008150 GO:0008152 GO:0008219 GO:0008630 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010256 GO:0010498 GO:0010604 GO:0010605 GO:0010941 GO:0012501 GO:0016020 GO:0016043 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019222 GO:0019538 GO:0019882 GO:0019899 GO:0019941 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023052 GO:0030101 GO:0030162 GO:0030163 GO:0030323 GO:0030324 GO:0030433 GO:0030544 GO:0031072 GO:0031323 GO:0031324 GO:0031325 GO:0031329 GO:0031330 GO:0031331 GO:0031593 GO:0031625 GO:0031647 GO:0031974 GO:0031981 GO:0031982 GO:0032268 GO:0032269 GO:0032270 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034613 GO:0034976 GO:0035295 GO:0035556 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036506 GO:0042176 GO:0042177 GO:0042221 GO:0042771 GO:0042802 GO:0042981 GO:0043021 GO:0043022 GO:0043066 GO:0043067 GO:0043069 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043230 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0045048 GO:0045132 GO:0045143 GO:0045184 GO:0045321 GO:0045732 GO:0045861 GO:0045862 GO:0045995 GO:0046649 GO:0048002 GO:0048232 GO:0048285 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050821 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051205 GO:0051234 GO:0051239 GO:0051246 GO:0051247 GO:0051248 GO:0051276 GO:0051321 GO:0051603 GO:0051641 GO:0051704 GO:0051716 GO:0051787 GO:0051788 GO:0060255 GO:0060322 GO:0060541 GO:0060548 GO:0061024 GO:0061136 GO:0061857 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0070059 GO:0070062 GO:0070192 GO:0070193 GO:0070628 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0071816 GO:0071818 GO:0071840 GO:0072001 GO:0072331 GO:0072332 GO:0072379 GO:0072657 GO:0080090 GO:0080134 GO:0080135 GO:0090150 GO:0097190 GO:0097193 GO:0098813 GO:0140013 GO:0140030 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901799 GO:1901800 GO:1903046 GO:1903050 GO:1903051 GO:1903052 GO:1903362 GO:1903363 GO:1903364 GO:1903561 GO:1904292 GO:1904294 GO:1904378 GO:1905897 GO:1905898 GO:1990381 GO:2000026 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

706

Amino Acids

74.53

Weight (kDa)

5.51

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 12 - 82 3.7e-08 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 14 - 84 1.6e-20 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 808
Acc36I ACCTGC 4 cut(s) 808, 1069, 1714, 1981
AccB1I GGYRCC 2 cut(s) 977, 1139
AccBSI CCGCTC 1 cut(s) 510
AccI GTMKAC 2 cut(s) 1177, 2059
AccII CGCG 3 cut(s) 684, 1281, 2056
AciI CCGC 5 cut(s) 157, 510, 1352, 1734, 2030
AcoI YGGCCR 3 cut(s) 223, 693, 997
AcsI RAATTY 3 cut(s) 1744, 1776, 1810
AcuI CTGAAG 1 cut(s) 1271
AdeI CACNNNGTG 1 cut(s) 1547
AfaI GTAC 5 cut(s) 313, 826, 1003, 1800, 1971
AfiI CCNNNNNNNGG 8 cut(s) 365, 921, 1099, 1322, 1484, 1635, 1655, 2046
AflII CTTAAG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 1498
AgsI TTSAA 9 cut(s) 112, 309, 344, 649, 848, 992, 1121, 1496, 2097
AhdI GACNNNNNGTC 1 cut(s) 2055
AjnI CCWGG 4 cut(s) 472, 1543, 1765, 1960
Alw21I GWGCWC 2 cut(s) 1159, 2001
Alw26I GTCTC 2 cut(s) 1366, 1608
AlwNI CAGNNNCTG 4 cut(s) 104, 296, 1607, 1871
AoxI GGCC 7 cut(s) 223, 485, 693, 997, 1024, 1564, 2007
ApeKI GCWGC 1 cut(s) 1946
ApoI RAATTY 3 cut(s) 1744, 1776, 1810
ArsI GACNNNNNNTTYG 2 cut(s) 487, 519
Asp700I GAANNNNTTC 3 cut(s) 729, 1237, 1810
AspLEI GCGC 1 cut(s) 684
AspS9I GGNCC 8 cut(s) 767, 1024, 1058, 1085, 1416, 1695, 1726, 2008
AsuC2I CCSGG 1 cut(s) 771
AsuHPI GGTGA 7 cut(s) 643, 789, 1233, 1340, 1535, 1559, 1784
AvaII GGWCC 6 cut(s) 767, 1058, 1085, 1416, 1695, 1726
BalI TGGCCA 2 cut(s) 225, 695
BamHI GGATCC 3 cut(s) 469, 789, 910
BanI GGYRCC 2 cut(s) 977, 1139
BanII GRGCYC 3 cut(s) 562, 1159, 1759
BbsI GAAGAC 2 cut(s) 328, 1578
Bbv12I GWGCWC 2 cut(s) 1159, 2001
BbvCI CCTCAGC 1 cut(s) 916
BbvI GCAGC 1 cut(s) 1958
BceAI ACGGC 2 cut(s) 303, 984
BciT130I CCWGG 4 cut(s) 474, 1545, 1767, 1962
BclI TGATCA 2 cut(s) 190, 1576
BcnI CCSGG 1 cut(s) 771
BcoDI GTCTC 2 cut(s) 1366, 1608
BfaI CTAG 4 cut(s) 831, 1815, 1953, 2091
BfmI CTRYAG 3 cut(s) 1062, 1160, 1974
BfrI CTTAAG 1 cut(s) 182
BfuAI ACCTGC 4 cut(s) 808, 1069, 1714, 1981
BisI GCNGC 2 cut(s) 158, 1947
BlsI GCNGC 2 cut(s) 159, 1948
Bme1390I CCNGG 5 cut(s) 474, 771, 1545, 1767, 1962
Bme18I GGWCC 6 cut(s) 767, 1058, 1085, 1416, 1695, 1726
BmeRI GACNNNNNGTC 1 cut(s) 2055
BmgT120I GGNCC 8 cut(s) 767, 1024, 1058, 1085, 1416, 1695, 1726, 2008
BmrFI CCNGG 5 cut(s) 474, 771, 1545, 1767, 1962
BmsI GCATC 4 cut(s) 84, 812, 1030, 1285
BpiI GAAGAC 2 cut(s) 328, 1578
BpmI CTGGAG 4 cut(s) 876, 975, 1404, 1848
Bpu10I CCTNAGC 1 cut(s) 916
BpuEI CTTGAG 2 cut(s) 1521, 1926
BpuMI CCSGG 1 cut(s) 771
BsaAI YACGTR 1 cut(s) 1783
BsaJI CCNNGG 7 cut(s) 270, 319, 473, 1149, 1208, 1877, 2025
Bsc4I CCNNNNNNNGG 8 cut(s) 365, 921, 1099, 1322, 1484, 1635, 1655, 2046
Bse118I RCCGGY 1 cut(s) 1562
Bse1I ACTGG 9 cut(s) 98, 139, 883, 939, 958, 1087, 1409, 1428, 1660
Bse3DI GCAATG 3 cut(s) 435, 696, 1013
BseBI CCWGG 4 cut(s) 474, 1545, 1767, 1962
BseDI CCNNGG 7 cut(s) 270, 319, 473, 1149, 1208, 1877, 2025
BseGI GGATG 9 cut(s) 22, 193, 226, 266, 376, 819, 930, 1143, 1204
BseLI CCNNNNNNNGG 8 cut(s) 365, 921, 1099, 1322, 1484, 1635, 1655, 2046
BseMI GCAATG 3 cut(s) 435, 696, 1013
BseMII CTCAG 9 cut(s) 531, 609, 659, 930, 1323, 1377, 1434, 1707, 1986
BseNI ACTGG 9 cut(s) 98, 139, 883, 939, 958, 1087, 1409, 1428, 1660
BseRI GAGGAG 1 cut(s) 1286
BseXI GCAGC 1 cut(s) 1958
Bsh1236I CGCG 3 cut(s) 684, 1281, 2056
Bsh1285I CGRYCG 1 cut(s) 329
BshFI GGCC 7 cut(s) 225, 487, 695, 999, 1026, 1566, 2009
BshNI GGYRCC 2 cut(s) 977, 1139
BsiEI CGRYCG 1 cut(s) 329
BsiHKAI GWGCWC 2 cut(s) 1159, 2001
BsiSI CCGG 2 cut(s) 771, 1563
BslFI GGGAC 6 cut(s) 288, 490, 753, 1708, 1712, 2062
BslI CCNNNNNNNGG 8 cut(s) 365, 921, 1099, 1322, 1484, 1635, 1655, 2046
BsmAI GTCTC 2 cut(s) 1366, 1608
BsmBI CGTCTC 1 cut(s) 1608
BsmFI GGGAC 6 cut(s) 288, 490, 753, 1708, 1712, 2062
BsnI GGCC 7 cut(s) 225, 487, 695, 999, 1026, 1566, 2009
Bsp1286I GDGCHC 4 cut(s) 562, 1159, 1759, 2001
Bsp1407I TGTACA 1 cut(s) 1798
Bsp19I CCATGG 1 cut(s) 1149
Bsp68I TCGCGA 1 cut(s) 1281
BspACI CCGC 5 cut(s) 157, 510, 1352, 1734, 2030
BspANI GGCC 7 cut(s) 225, 487, 695, 999, 1026, 1566, 2009
BspCNI CTCAG 9 cut(s) 532, 608, 660, 929, 1322, 1376, 1435, 1708, 1987
BspFNI CGCG 3 cut(s) 684, 1281, 2056
BspMAI CTGCAG 3 cut(s) 1066, 1164, 1978
BspMI ACCTGC 4 cut(s) 808, 1069, 1714, 1981
BspT107I GGYRCC 2 cut(s) 977, 1139
BspTI CTTAAG 1 cut(s) 182
BsrBI CCGCTC 1 cut(s) 510
BsrDI GCAATG 3 cut(s) 435, 696, 1013
BsrFI RCCGGY 1 cut(s) 1562
BsrGI TGTACA 1 cut(s) 1798
BsrI ACTGG 9 cut(s) 98, 139, 883, 939, 958, 1087, 1409, 1428, 1660
BssAI RCCGGY 1 cut(s) 1562
BssECI CCNNGG 7 cut(s) 270, 319, 473, 1149, 1208, 1877, 2025
BssT1I CCWWGG 3 cut(s) 1149, 1208, 1877
Bst2UI CCWGG 4 cut(s) 474, 1545, 1767, 1962
Bst4CI ACNGT 5 cut(s) 264, 1035, 1420, 1523, 2026
Bst6I CTCTTC 4 cut(s) 1116, 1228, 1996, 2023
BstAFI CTTAAG 1 cut(s) 182
BstAUI TGTACA 1 cut(s) 1798
BstBAI YACGTR 1 cut(s) 1783
BstC8I GCNNGC 3 cut(s) 546, 880, 1564
BstDSI CCRYGG 3 cut(s) 319, 1149, 2025
BstEII GGTNACC 1 cut(s) 1547
BstF5I GGATG 9 cut(s) 22, 193, 226, 266, 376, 819, 930, 1143, 1204
BstFNI CGCG 3 cut(s) 684, 1281, 2056
BstHHI GCGC 1 cut(s) 684
BstMAI GTCTC 2 cut(s) 1366, 1608
BstMCI CGRYCG 1 cut(s) 329
BstMWI GCNNNNNNNGC 6 cut(s) 148, 157, 453, 809, 1061, 1868
BstNI CCWGG 4 cut(s) 474, 1545, 1767, 1962
BstNSI RCATGY 1 cut(s) 1502
BstPI GGTNACC 1 cut(s) 1547
BstSCI CCNGG 5 cut(s) 472, 769, 1543, 1765, 1960
BstSFI CTRYAG 3 cut(s) 1062, 1160, 1974
BstUI CGCG 3 cut(s) 684, 1281, 2056
BstV1I GCAGC 1 cut(s) 1958
BstV2I GAAGAC 2 cut(s) 328, 1578
BstX2I RGATCY 6 cut(s) 469, 789, 910, 1532, 1603, 1645
BstXI CCANNNNNNTGG 1 cut(s) 1150
BstYI RGATCY 6 cut(s) 469, 789, 910, 1532, 1603, 1645
BsuRI GGCC 7 cut(s) 225, 487, 695, 999, 1026, 1566, 2009
BtgI CCRYGG 3 cut(s) 319, 1149, 2025
BtgZI GCGATG 2 cut(s) 1262, 2037
BtsCI GGATG 9 cut(s) 22, 193, 226, 266, 376, 819, 930, 1143, 1204
BtsI GCAGTG 4 cut(s) 454, 1050, 1251, 1801
BtsIMutI CAGTG 8 cut(s) 358, 454, 946, 1050, 1251, 1572, 1653, 1801
BtuMI TCGCGA 1 cut(s) 1281
BveI ACCTGC 4 cut(s) 808, 1069, 1714, 1981
Cac8I GCNNGC 3 cut(s) 546, 880, 1564
CaiI CAGNNNCTG 4 cut(s) 104, 296, 1607, 1871
CfoI GCGC 1 cut(s) 684
Cfr10I RCCGGY 1 cut(s) 1562
Cfr13I GGNCC 8 cut(s) 767, 1024, 1058, 1085, 1416, 1695, 1726, 2008
CseI GACGC 2 cut(s) 723, 2045
CsiI ACCWGGT 1 cut(s) 1543
Csp6I GTAC 5 cut(s) 312, 825, 1002, 1799, 1970
CviAII CATG 3 cut(s) 212, 1150, 1499
CviQI GTAC 5 cut(s) 312, 825, 1002, 1799, 1970
DraI TTTAAA 1 cut(s) 1743
DraIII CACNNNGTG 1 cut(s) 1547
DriI GACNNNNNGTC 1 cut(s) 2055
EaeI YGGCCR 3 cut(s) 223, 693, 997
Eam1104I CTCTTC 4 cut(s) 1116, 1228, 1996, 2023
Eam1105I GACNNNNNGTC 1 cut(s) 2055
EarI CTCTTC 4 cut(s) 1116, 1228, 1996, 2023
EciI GGCGGA 1 cut(s) 2045
Ecl136II GAGCTC 1 cut(s) 1157
Eco130I CCWWGG 3 cut(s) 1149, 1208, 1877
Eco24I GRGCYC 3 cut(s) 562, 1159, 1759
Eco32I GATATC 2 cut(s) 665, 1938
Eco47I GGWCC 6 cut(s) 767, 1058, 1085, 1416, 1695, 1726
Eco53kI GAGCTC 1 cut(s) 1157
Eco57I CTGAAG 1 cut(s) 1271
Eco91I GGTNACC 1 cut(s) 1547
EcoICRI GAGCTC 1 cut(s) 1157
EcoO109I RGGNCCY 3 cut(s) 767, 1695, 1726
EcoO65I GGTNACC 1 cut(s) 1547
EcoRI GAATTC 1 cut(s) 1810
EcoRII CCWGG 4 cut(s) 472, 1543, 1765, 1960
EcoRV GATATC 2 cut(s) 665, 1938
EcoT14I CCWWGG 3 cut(s) 1149, 1208, 1877
EcoT38I GRGCYC 3 cut(s) 562, 1159, 1759
ErhI CCWWGG 3 cut(s) 1149, 1208, 1877
Esp3I CGTCTC 1 cut(s) 1608
FaeI CATG 3 cut(s) 215, 1153, 1502
FaqI GGGAC 6 cut(s) 288, 490, 753, 1708, 1712, 2062
FatI CATG 3 cut(s) 211, 1149, 1498
FbaI TGATCA 2 cut(s) 190, 1576
FblI GTMKAC 2 cut(s) 1177, 2059
Fnu4HI GCNGC 2 cut(s) 158, 1947
FokI GGATG 9 cut(s) 29, 200, 233, 253, 383, 806, 937, 1130, 1191
FriOI GRGCYC 3 cut(s) 562, 1159, 1759
Fsp4HI GCNGC 2 cut(s) 158, 1947
FspBI CTAG 4 cut(s) 831, 1815, 1953, 2091
GlaI GCGC 1 cut(s) 683
GluI GCNGC 2 cut(s) 158, 1947
GsuI CTGGAG 4 cut(s) 876, 975, 1404, 1848
HaeIII GGCC 7 cut(s) 225, 487, 695, 999, 1026, 1566, 2009
HapII CCGG 2 cut(s) 771, 1563
HgaI GACGC 2 cut(s) 723, 2045
HhaI GCGC 1 cut(s) 684
Hin1II CATG 3 cut(s) 215, 1153, 1502
Hin6I GCGC 1 cut(s) 682
HinP1I GCGC 1 cut(s) 682
HincII GTYRAC 1 cut(s) 2060
HindII GTYRAC 1 cut(s) 2060
HpaII CCGG 2 cut(s) 771, 1563
HphI GGTGA 7 cut(s) 643, 789, 1233, 1340, 1535, 1559, 1784
Hpy166II GTNNAC 7 cut(s) 26, 986, 1178, 1241, 1519, 1799, 2060
Hpy8I GTNNAC 7 cut(s) 26, 986, 1178, 1241, 1519, 1799, 2060
Hpy99I CGWCG 2 cut(s) 766, 2061
HpyAV CCTTC 6 cut(s) 446, 1305, 1482, 1577, 1886, 2104
HpyCH4III ACNGT 5 cut(s) 264, 1035, 1420, 1523, 2026
HpyCH4IV ACGT 2 cut(s) 1782, 2101
HpyF10VI GCNNNNNNNGC 6 cut(s) 148, 157, 453, 809, 1061, 1868
HpySE526I ACGT 2 cut(s) 1782, 2101
Hsp92II CATG 3 cut(s) 215, 1153, 1502
HspAI GCGC 1 cut(s) 682
KflI GGGWCCC 2 cut(s) 767, 1695
KroI GCCGGC 1 cut(s) 1562
KroNI GCCGGC 1 cut(s) 1564
Ksp22I TGATCA 2 cut(s) 190, 1576
LmnI GCTCC 4 cut(s) 956, 1154, 1273, 1867
Lsp1109I GCAGC 1 cut(s) 1958
LweI GCATC 4 cut(s) 84, 812, 1030, 1285
MabI ACCWGGT 1 cut(s) 1543
MaeI CTAG 4 cut(s) 831, 1815, 1953, 2091
MaeII ACGT 2 cut(s) 1782, 2101
MaeIII GTNAC 5 cut(s) 130, 463, 590, 904, 1547
MbiI CCGCTC 1 cut(s) 510
MboII GAAGA 9 cut(s) 328, 1103, 1245, 1277, 1578, 1799, 1901, 1983, 2010
MflI RGATCY 6 cut(s) 469, 789, 910, 1532, 1603, 1645
MhlI GDGCHC 4 cut(s) 562, 1159, 1759, 2001
MlsI TGGCCA 2 cut(s) 225, 695
MluCI AATT 6 cut(s) 754, 970, 1744, 1776, 1810, 1909
MluNI TGGCCA 2 cut(s) 225, 695
MlyI GAGTC 3 cut(s) 679, 1454, 2009
MmeI TCCRAC 2 cut(s) 403, 867
Mox20I TGGCCA 2 cut(s) 225, 695
MroNI GCCGGC 1 cut(s) 1562
MroXI GAANNNNTTC 3 cut(s) 729, 1237, 1810
MscI TGGCCA 2 cut(s) 225, 695
MseI TTAA 4 cut(s) 183, 1050, 1182, 1742
MslI CAYNNNNRTG 2 cut(s) 738, 1148
Msp20I TGGCCA 2 cut(s) 225, 695
MspA1I CMGCKG 1 cut(s) 157
MspCI CTTAAG 1 cut(s) 182
MspI CCGG 2 cut(s) 771, 1563
MspR9I CCNGG 5 cut(s) 474, 771, 1545, 1767, 1962
MvaI CCWGG 4 cut(s) 474, 1545, 1767, 1962
MvnI CGCG 3 cut(s) 684, 1281, 2056
MwoI GCNNNNNNNGC 6 cut(s) 148, 157, 453, 809, 1061, 1868
NaeI GCCGGC 1 cut(s) 1564
NciI CCSGG 1 cut(s) 771
NcoI CCATGG 1 cut(s) 1149
NgoMIV GCCGGC 1 cut(s) 1562
NlaIII CATG 3 cut(s) 215, 1153, 1502
NmeAIII GCCGAG 1 cut(s) 393
NmuCI GTSAC 4 cut(s) 463, 590, 904, 1547
NruI TCGCGA 1 cut(s) 1281
NspI RCATGY 1 cut(s) 1502
PaqCI CACCTGC 1 cut(s) 808
PciI ACATGT 1 cut(s) 1498
PdiI GCCGGC 1 cut(s) 1564
PdmI GAANNNNTTC 3 cut(s) 729, 1237, 1810
PflFI GACNNNGTC 2 cut(s) 717, 2064
PfoI TCCNGGA 1 cut(s) 769
PkrI GCNGC 2 cut(s) 159, 1948
Ple19I CGATCG 1 cut(s) 329
PleI GAGTC 3 cut(s) 678, 1453, 2009
PpsI GAGTC 3 cut(s) 678, 1453, 2009
Ppu21I YACGTR 1 cut(s) 1783
PpuMI RGGWCCY 3 cut(s) 767, 1695, 1726
PscI ACATGT 1 cut(s) 1498
Psp124BI GAGCTC 1 cut(s) 1159
Psp5II RGGWCCY 3 cut(s) 767, 1695, 1726
Psp6I CCWGG 4 cut(s) 472, 1543, 1765, 1960
PspEI GGTNACC 1 cut(s) 1547
PspGI CCWGG 4 cut(s) 472, 1543, 1765, 1960
PspPI GGNCC 8 cut(s) 767, 1024, 1058, 1085, 1416, 1695, 1726, 2008
PspPPI RGGWCCY 3 cut(s) 767, 1695, 1726
PstI CTGCAG 3 cut(s) 1066, 1164, 1978
PstNI CAGNNNCTG 4 cut(s) 104, 296, 1607, 1871
PsuI RGATCY 6 cut(s) 469, 789, 910, 1532, 1603, 1645
PsyI GACNNNGTC 2 cut(s) 717, 2064
PvuI CGATCG 1 cut(s) 329
RruI TCGCGA 1 cut(s) 1281
RsaI GTAC 5 cut(s) 313, 826, 1003, 1800, 1971
RsaNI GTAC 5 cut(s) 312, 825, 1002, 1799, 1970
RseI CAYNNNNRTG 2 cut(s) 738, 1148
SacI GAGCTC 1 cut(s) 1159
SalI GTCGAC 1 cut(s) 2058
SaqAI TTAA 4 cut(s) 183, 1050, 1182, 1742
SatI GCNGC 2 cut(s) 158, 1947
Sau96I GGNCC 8 cut(s) 767, 1024, 1058, 1085, 1416, 1695, 1726, 2008
SchI GAGTC 3 cut(s) 679, 1454, 2009
ScrFI CCNGG 5 cut(s) 474, 771, 1545, 1767, 1962
SduI GDGCHC 4 cut(s) 562, 1159, 1759, 2001
SexAI ACCWGGT 1 cut(s) 1543
SfaNI GCATC 4 cut(s) 84, 812, 1030, 1285
SfcI CTRYAG 3 cut(s) 1062, 1160, 1974
SinI GGWCC 6 cut(s) 767, 1058, 1085, 1416, 1695, 1726
SmiMI CAYNNNNRTG 2 cut(s) 738, 1148
SmlI CTYRAG 3 cut(s) 182, 1536, 1941
SmoI CTYRAG 3 cut(s) 182, 1536, 1941
Sse9I AATT 6 cut(s) 754, 970, 1744, 1776, 1810, 1909
SsiI CCGC 5 cut(s) 157, 510, 1352, 1734, 2030
SspI AATATT 1 cut(s) 1899
SspMI CTAG 4 cut(s) 831, 1815, 1953, 2091
SstI GAGCTC 1 cut(s) 1159
StyD4I CCNGG 5 cut(s) 472, 769, 1543, 1765, 1960
StyI CCWWGG 3 cut(s) 1149, 1208, 1877
TaaI ACNGT 5 cut(s) 264, 1035, 1420, 1523, 2026
TaiI ACGT 2 cut(s) 1785, 2104
TaqI TCGA 7 cut(s) 325, 329, 661, 871, 1267, 1460, 2059
TasI AATT 6 cut(s) 754, 970, 1744, 1776, 1810, 1909
TatI WGTACW 2 cut(s) 311, 1798
TauI GCSGC 1 cut(s) 160
Tru1I TTAA 4 cut(s) 183, 1050, 1182, 1742
Tru9I TTAA 4 cut(s) 183, 1050, 1182, 1742
TscAI CASTG 8 cut(s) 358, 454, 946, 1050, 1258, 1579, 1660, 1801
TseFI GTSAC 4 cut(s) 463, 590, 904, 1547
TseI GCWGC 1 cut(s) 1946
Tsp45I GTSAC 4 cut(s) 463, 590, 904, 1547
TspDTI ATGAA 6 cut(s) 328, 722, 1060, 1193, 1823, 1907
TspGWI ACGGA 5 cut(s) 482, 812, 923, 937, 1632
TspRI CASTG 8 cut(s) 358, 454, 946, 1050, 1258, 1579, 1660, 1801
Tth111I GACNNNGTC 2 cut(s) 717, 2064
Vha464I CTTAAG 1 cut(s) 182
VpaK11BI GGWCC 6 cut(s) 767, 1058, 1085, 1416, 1695, 1726
XapI RAATTY 3 cut(s) 1744, 1776, 1810
XceI RCATGY 1 cut(s) 1502
XmiI GTMKAC 2 cut(s) 1177, 2059
XmnI GAANNNNTTC 3 cut(s) 729, 1237, 1810
XspI CTAG 4 cut(s) 831, 1815, 1953, 2091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.