Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009254

Physical Location & Seq

Genomic Coordinates Forward (+)

24012040 .. 24014129

Gene Structure 2090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAGGATAGTCCCGGATGATCAAAATGGAGGAGCTTTCTTCATTGCTGTCTTCCACAAACATTCTGCTTTGCCAGCCAATCAGGGGAAACCTAATAGTCTGAAAGAGGACTTGGGCTCTAGAAATGACGAGCCGCAGGTAGAATTACAAAATCAGGGTACTGAAGGTACAAATGGGATGGTGGCTAGTTTGGAAGATGGTACAGATGAGACTTTTTTAGAAGCAGCTTCAGAGGTAGAGTTAATAAAGGAAGAACCAGATGGGGCGTCTTTGGAGCTTGATCCTTCTGTCACGCTTGAAGAAAATGTATCGGAGGAAGCCCAGGAGCCTGTTGATGAGGAAACAGAACCCAAGAAAGCTGGAGGAAAGAGAAAGAAGCAGTGTCAAGGCAAGTGGAGAGGAGTGGACCCTGTTGTTTTCTTTAAAGATGAAGCTACCATTAATAGCATAAAGACATTCTATGGCATTAATGAATCGTTTCCCTTCAATGACCACCTTGTCACAAGAAACACCGATGCTAATCATGTGAAAAGAATTTACTACATCTCAAAGTCAGTCAAAGATGTTCTTGAGCTGAATTTCTCCGTTGGACAGCAACTTAAGATAACATCCATTGGGCTTAAGATGTTTGAACGACAAACTGCAAGAGAAGGAAATTTGGCGCCTTGTTTATTCCGGATATCATCAGAAGGATTGCCACTTATTCTTCCGTACATAACCAAACAGATTCTATGTGCATCCCTCGTTGACTTTAAACATCTTCTTGAGTATAAATCTATCAAGTTTGCTGATTTTGTTGATTCTGAGTTCGGTCGGAAGGCATCAGGCATAATGTCAGGATGCTGTGTGATAGTTTTGAGTAAAGATGGCAAGGCCACGTCGGGTCCTATTGAAGTAGACAAGTCAACAATGGCCATTGGATGCTGGAAAGGTAGGTCCAGTTTGTCTGTGATGATCACTGCAATTGACTGCCAAGAACTGCAAGAAAGGCTTTTGGCACGCATGGAAACTGAAAATGAGCCTTCGGAGAAGAGAGACGAGGCTTCTAATGTCAGCAGGGATGAGGTACAGGACGTAAAGGATATAGAAAAGAACGTTGACGAGGAAAGCATCACGCTTGCATCAGAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F

Protein Analysis

378

Amino Acids

41.74

Weight (kDa)

4.77

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-PUA_NSUN2	PF25376	137 - 240	2.3e-35	NSUN2 Pre-PUA domain
PUA_NSUN2	PF25378	242 - 332	4.8e-26	NSUN2 PUA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22400 AT4G40000 AT4G40000
fragaria_vesca	FvH4_1g20370 FvH4_1g20370 FvH4_1g20370
malus_domestica	MD01G1034300.v1.1 MD15G1321600.v1.1
prunus_persica	Prupe.6G191700_v2.0.a1 Prupe.6G191700_v2.0.a1
pyrus_communis	pycom01g06140 pycom15g28220
rosa_chinensis	RchiOBHm_Chr2g0112501
rosa_laevigata	RLG00000017986
rosa_multiflora	Rmu_sc0001499.1_g000061
rosa_roxburghii	Rroxscaffold_2G00131370
rosa_rugosa	Rorug02G0181300
rosa_samantha	Rh2AG234500 Rh2BG248100 Rh2CG239100 Rh2DG242100
rosa_wichuraiana	Rw2G018180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	497
Acc36I	ACCTGC	1 cut(s)	127
AccB1I	GGYRCC	1 cut(s)	661
AccI	GTMKAC	1 cut(s)	897
AccIII	TCCGGA	1 cut(s)	675
AciI	CCGC	1 cut(s)	134
AclI	AACGTT	1 cut(s)	1095
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	912
AcsI	RAATTY	3 cut(s)	534, 577, 655
AcuI	CTGAAG	2 cut(s)	183, 213
AcyI	GRCGYC	2 cut(s)	266, 662
AfaI	GTAC	5 cut(s)	160, 169, 202, 713, 1068
AfiI	CCNNNNNNNGG	1 cut(s)	84
AflII	CTTAAG	2 cut(s)	599, 620
AgsI	TTSAA	4 cut(s)	299, 487, 632, 893
AjiI	CACGTC	1 cut(s)	879
AjnI	CCWGG	1 cut(s)	321
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	6 cut(s)	35, 227, 277, 359, 434, 574
AluI	AGCT	6 cut(s)	35, 227, 277, 359, 434, 574
Alw26I	GTCTC	2 cut(s)	203, 1029
AlwI	GGATC	1 cut(s)	275
Aor13HI	TCCGGA	1 cut(s)	675
AoxI	GGCC	2 cut(s)	873, 912
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	3 cut(s)	534, 577, 655
AseI	ATTAAT	2 cut(s)	441, 468
Asp700I	GAANNNNTTC	1 cut(s)	477
AspLEI	GCGC	1 cut(s)	664
AspS9I	GGNCC	3 cut(s)	406, 884, 936
AsuC2I	CCSGG	1 cut(s)	14
AvaII	GGWCC	3 cut(s)	406, 884, 936
BalI	TGGCCA	1 cut(s)	914
BanI	GGYRCC	1 cut(s)	661
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	4 cut(s)	172, 191, 254, 860
BciT130I	CCWGG	1 cut(s)	323
BclI	TGATCA	2 cut(s)	19, 954
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	2 cut(s)	203, 1029
BfaI	CTAG	2 cut(s)	120, 186
BfoI	RGCGCY	1 cut(s)	665
BfrI	CTTAAG	2 cut(s)	599, 620
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	2 cut(s)	134, 225
BlsI	GCNGC	2 cut(s)	135, 226
Bme1390I	CCNGG	2 cut(s)	14, 323
Bme18I	GGWCC	3 cut(s)	406, 884, 936
BmgBI	CACGTC	1 cut(s)	879
BmgT120I	GGNCC	3 cut(s)	406, 884, 936
BmiI	GGNNCC	4 cut(s)	327, 408, 663, 885
BmrFI	CCNGG	2 cut(s)	14, 323
BmsI	GCATC	7 cut(s)	505, 746, 830, 830, 911, 1119, 1130
BpiI	GAAGAC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	590, 785
BpuMI	CCSGG	1 cut(s)	14
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	2 cut(s)	266, 662
BsaJI	CCNNGG	1 cut(s)	321
BsaWI	WCCGGW	1 cut(s)	675
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	939
Bse3DI	GCAATG	1 cut(s)	42
Bse8I	GATNNNNATC	1 cut(s)	519
BseAI	TCCGGA	1 cut(s)	675
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	7 cut(s)	22, 183, 608, 737, 845, 926, 1066
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	795
BseNI	ACTGG	1 cut(s)	939
BseRI	GAGGAG	2 cut(s)	45, 414
BseXI	GCAGC	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	814
BshFI	GGCC	2 cut(s)	875, 914
BshNI	GGYRCC	1 cut(s)	661
BsiEI	CGRYCG	1 cut(s)	814
BsiSI	CCGG	2 cut(s)	14, 676
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	2 cut(s)	203, 1029
BsmBI	CGTCTC	1 cut(s)	1029
BsnI	GGCC	2 cut(s)	875, 914
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	675
Bsp143I	GATC	3 cut(s)	19, 280, 954
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	2 cut(s)	875, 914
BspCNI	CTCAG	1 cut(s)	796
BspEI	TCCGGA	1 cut(s)	675
BspLI	GGNNCC	4 cut(s)	327, 408, 663, 885
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	661
BspTI	CTTAAG	2 cut(s)	599, 620
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	939
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	3 cut(s)	19, 280, 954
BssNI	GRCGYC	2 cut(s)	266, 662
Bst2UI	CCWGG	1 cut(s)	323
Bst6I	CTCTTC	1 cut(s)	1025
BstACI	GRCGYC	2 cut(s)	266, 662
BstAFI	CTTAAG	2 cut(s)	599, 620
BstC8I	GCNNGC	3 cut(s)	75, 1000, 1119
BstDEI	CTNAG	1 cut(s)	804
BstF5I	GGATG	7 cut(s)	22, 183, 608, 737, 845, 926, 1066
BstH2I	RGCGCY	1 cut(s)	665
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	3 cut(s)	22, 283, 957
BstMAI	GTCTC	2 cut(s)	203, 1029
BstMBI	GATC	3 cut(s)	19, 280, 954
BstMCI	CGRYCG	1 cut(s)	814
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 988
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	12, 321
BstV1I	GCAGC	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	875, 914
BtrI	CACGTC	1 cut(s)	879
BtsCI	GGATG	7 cut(s)	22, 183, 608, 737, 845, 926, 1066
BtsI	GCAGTG	2 cut(s)	386, 957
BtsIMutI	CAGTG	2 cut(s)	386, 957
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	3 cut(s)	75, 1000, 1119
CfoI	GCGC	1 cut(s)	664
Cfr13I	GGNCC	3 cut(s)	406, 884, 936
CseI	GACGC	1 cut(s)	255
Csp6I	GTAC	5 cut(s)	159, 168, 201, 712, 1067
CspCI	CAANNNNNGTGG	2 cut(s)	374, 409
CviAII	CATG	2 cut(s)	524, 1003
CviQI	GTAC	5 cut(s)	159, 168, 201, 712, 1067
DdeI	CTNAG	1 cut(s)	804
DinI	GGCGCC	1 cut(s)	663
DpnI	GATC	3 cut(s)	21, 282, 956
DpnII	GATC	3 cut(s)	19, 280, 954
DraI	TTTAAA	2 cut(s)	424, 754
DrdI	GACNNNNNNGTC	1 cut(s)	497
DseDI	GACNNNNNNGTC	1 cut(s)	497
EaeI	YGGCCR	1 cut(s)	912
Eam1104I	CTCTTC	1 cut(s)	1025
EarI	CTCTTC	1 cut(s)	1025
Eco24I	GRGCYC	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	681
Eco47I	GGWCC	3 cut(s)	406, 884, 936
Eco57I	CTGAAG	2 cut(s)	183, 213
EcoO109I	RGGNCCY	1 cut(s)	884
EcoRII	CCWGG	1 cut(s)	321
EcoRV	GATATC	1 cut(s)	681
EcoT38I	GRGCYC	1 cut(s)	119
EgeI	GGCGCC	1 cut(s)	663
EheI	GGCGCC	1 cut(s)	663
Esp3I	CGTCTC	1 cut(s)	1029
FaeI	CATG	2 cut(s)	527, 1006
FaiI	YATR	9 cut(s)	449, 462, 525, 716, 733, 771, 830, 1004, 1085
FalI	AAGNNNNNCTT	4 cut(s)	552, 584, 975, 1007
FatI	CATG	2 cut(s)	523, 1002
FbaI	TGATCA	2 cut(s)	19, 954
FblI	GTMKAC	1 cut(s)	897
Fnu4HI	GCNGC	2 cut(s)	134, 225
FokI	GGATG	7 cut(s)	29, 190, 595, 724, 852, 933, 1073
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	134, 225
FspBI	CTAG	2 cut(s)	120, 186
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	2 cut(s)	134, 225
GsuI	CTGGAG	1 cut(s)	381
HaeII	RGCGCY	1 cut(s)	665
HaeIII	GGCC	2 cut(s)	875, 914
HapII	CCGG	2 cut(s)	14, 676
HgaI	GACGC	1 cut(s)	255
HhaI	GCGC	1 cut(s)	664
Hin1I	GRCGYC	2 cut(s)	266, 662
Hin1II	CATG	2 cut(s)	527, 1006
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HincII	GTYRAC	3 cut(s)	748, 906, 1099
HindII	GTYRAC	3 cut(s)	748, 906, 1099
HinfI	GANTC	3 cut(s)	473, 727, 800
HpaII	CCGG	2 cut(s)	14, 676
Hpy166II	GTNNAC	5 cut(s)	406, 748, 898, 906, 1099
Hpy188I	TCNGA	8 cut(s)	102, 232, 313, 688, 805, 816, 1027, 1126
Hpy188III	TCNNGA	5 cut(s)	120, 569, 676, 764, 837
Hpy8I	GTNNAC	5 cut(s)	406, 748, 898, 906, 1099
Hpy99I	CGWCG	1 cut(s)	883
HpyAV	CCTTC	7 cut(s)	158, 294, 493, 644, 683, 811, 1032
HpyCH4IV	ACGT	3 cut(s)	878, 1074, 1095
HpyCH4V	TGCA	5 cut(s)	644, 737, 962, 982, 1121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 988
HpyF3I	CTNAG	1 cut(s)	804
HpySE526I	ACGT	3 cut(s)	878, 1074, 1095
Hsp92I	GRCGYC	2 cut(s)	266, 662
Hsp92II	CATG	2 cut(s)	527, 1006
HspAI	GCGC	1 cut(s)	662
KasI	GGCGCC	1 cut(s)	661
Kpn2I	TCCGGA	1 cut(s)	675
Ksp22I	TGATCA	2 cut(s)	19, 954
Kzo9I	GATC	3 cut(s)	19, 280, 954
LmnI	GCTCC	3 cut(s)	32, 274, 325
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	7 cut(s)	505, 746, 830, 830, 911, 1119, 1130
MaeI	CTAG	2 cut(s)	120, 186
MaeII	ACGT	3 cut(s)	878, 1074, 1095
MaeIII	GTNAC	2 cut(s)	289, 499
MalI	GATC	3 cut(s)	21, 282, 956
MboI	GATC	3 cut(s)	19, 280, 954
MboII	GAAGA	8 cut(s)	31, 43, 206, 263, 311, 698, 752, 1042
MfeI	CAATTG	1 cut(s)	963
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	914
MluCI	AATT	5 cut(s)	143, 534, 577, 655, 963
MluNI	TGGCCA	1 cut(s)	914
Mly113I	GGCGCC	1 cut(s)	662
MmeI	TCCRAC	2 cut(s)	568, 794
Mox20I	TGGCCA	1 cut(s)	914
MroI	TCCGGA	1 cut(s)	675
MroXI	GAANNNNTTC	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	914
MseI	TTAA	8 cut(s)	242, 423, 441, 468, 600, 621, 753, 1132
Msp20I	TGGCCA	1 cut(s)	914
MspCI	CTTAAG	2 cut(s)	599, 620
MspI	CCGG	2 cut(s)	14, 676
MspR9I	CCNGG	2 cut(s)	14, 323
MunI	CAATTG	1 cut(s)	963
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	2 cut(s)	74, 988
NarI	GGCGCC	1 cut(s)	662
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	3 cut(s)	19, 280, 954
NlaIII	CATG	2 cut(s)	527, 1006
NlaIV	GGNNCC	4 cut(s)	327, 408, 663, 885
NmuCI	GTSAC	2 cut(s)	289, 499
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	473, 727, 800
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	135, 226
PluTI	GGCGCC	1 cut(s)	665
PpuMI	RGGWCCY	1 cut(s)	884
PshBI	ATTAAT	2 cut(s)	441, 468
Psp1406I	AACGTT	1 cut(s)	1095
Psp5II	RGGWCCY	1 cut(s)	884
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	4 cut(s)	327, 408, 663, 885
PspPI	GGNCC	3 cut(s)	406, 884, 936
PspPPI	RGGWCCY	1 cut(s)	884
RsaI	GTAC	5 cut(s)	160, 169, 202, 713, 1068
RsaNI	GTAC	5 cut(s)	159, 168, 201, 712, 1067
SaqAI	TTAA	8 cut(s)	242, 423, 441, 468, 600, 621, 753, 1132
SatI	GCNGC	2 cut(s)	134, 225
Sau3AI	GATC	3 cut(s)	19, 280, 954
Sau96I	GGNCC	3 cut(s)	406, 884, 936
ScrFI	CCNGG	2 cut(s)	14, 323
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	7 cut(s)	505, 746, 830, 830, 911, 1119, 1130
SfoI	GGCGCC	1 cut(s)	663
SinI	GGWCC	3 cut(s)	406, 884, 936
SmlI	CTYRAG	4 cut(s)	569, 599, 620, 764
SmoI	CTYRAG	4 cut(s)	569, 599, 620, 764
Sse9I	AATT	5 cut(s)	143, 534, 577, 655, 963
SsiI	CCGC	1 cut(s)	134
SspDI	GGCGCC	1 cut(s)	661
SspMI	CTAG	2 cut(s)	120, 186
StyD4I	CCNGG	2 cut(s)	12, 321
TaiI	ACGT	3 cut(s)	881, 1077, 1098
TaqII	GACCGA	1 cut(s)	800
TasI	AATT	5 cut(s)	143, 534, 577, 655, 963
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	3 cut(s)	473, 727, 800
Tru1I	TTAA	8 cut(s)	242, 423, 441, 468, 600, 621, 753, 1132
Tru9I	TTAA	8 cut(s)	242, 423, 441, 468, 600, 621, 753, 1132
TscAI	CASTG	2 cut(s)	386, 964
TseFI	GTSAC	2 cut(s)	289, 499
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	2 cut(s)	289, 499
TspDTI	ATGAA	3 cut(s)	31, 444, 486
TspGWI	ACGGA	2 cut(s)	574, 699
TspRI	CASTG	2 cut(s)	386, 964
Vha464I	CTTAAG	2 cut(s)	599, 620
VpaK11BI	GGWCC	3 cut(s)	406, 884, 936
VspI	ATTAAT	2 cut(s)	441, 468
XapI	RAATTY	3 cut(s)	534, 577, 655
XbaI	TCTAGA	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	897
XmnI	GAANNNNTTC	1 cut(s)	477
XspI	CTAG	2 cut(s)	120, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.