Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015333

Physical Location & Seq

Genomic Coordinates Forward (+)

26667566 .. 26668905

Gene Structure 1340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g29720.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGATGCTTCTACGTCATCATCCAAACAAGGCACAACAGAGATTGTGTTCTTTGACATAGAAACAAATGTACCCAATAGAGCCGGACAAAGGTTCTGGGTTTTAGAGTTTGGTGCAATTGTAGTTTGCCCTCAGAAGCTTGTTGAGCTGGAAAGTTATAGCACGCTCATTAGGCCGGGGGACTTGTCTGCTGTAGCATTGAGGTCTGGCCGGTCCGAGGGGATCACACAGGAAACTGTTGTAGATGCACCCTTGTTTGAGGAAGTTGCCGATAAGATATTCAGCATTTTGAATGGCAGGGTGTGGGCAGGCCACAACATTCGAAGATTCGATTGTGTTAGGATTAAGGAGGCCTTTGCAAAGATCGGTAGGCCTGCACCTCAGCCAGTTGGGATGATTGATTCTTTAGGTGTGTTAACTGGTAAGTTTGGAAGAAGAGCTGGAAATATGAAGATGGCAACATTGGCATCATACTTCAATCTTGGGCAGCAAAAGCACAGGAGCCTTGAAGACGTAAGGATGAACCTGGAGGTCCTCAAGAACTGTGCAACCGTGCTCTTTTTGGTACTACCACAAGAACATACATACATACATATATATATATATATATATATATATGTATGTATGGTAAAGAATCTGTTGTGTAGAGCCCAAGGAAATCAACCTCTTAACAACATCCTCAAGCATTCTCATTCCCTACTACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

236

Amino Acids

26.4

Weight (kDa)

9.13

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39810
fragaria_vesca	FvH4_1g21490
malus_domestica	MD15G1329100.v1.1
prunus_persica	Prupe.6G179800_v2.0.a1
pyrus_communis	pycom01g05230 pycom15g29710 pycom15g29720
rosa_chinensis	RchiOBHm_Chr2g0115371
rosa_laevigata	RLG00000018180
rosa_roxburghii	Rroxscaffold_2G00130860
rosa_rugosa	Rorug02G0195900
rosa_samantha	Rh2AG254300 Rh2BG264500 Rh2CG259000 Rh2DG262400
rosa_wichuraiana	Rw2G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	208
AfaI	GTAC	2 cut(s)	72, 567
AfiI	CCNNNNNNNGG	3 cut(s)	90, 217, 702
AgsI	TTSAA	3 cut(s)	292, 478, 509
AjnI	CCWGG	1 cut(s)	525
AluBI	AGCT	3 cut(s)	139, 148, 440
AluI	AGCT	3 cut(s)	139, 148, 440
Alw21I	GWGCWC	1 cut(s)	558
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	5 cut(s)	173, 208, 310, 351, 371
ApeKI	GCWGC	1 cut(s)	487
AspS9I	GGNCC	2 cut(s)	213, 532
AsuC2I	CCSGG	1 cut(s)	177
AsuII	TTCGAA	1 cut(s)	322
AvaII	GGWCC	2 cut(s)	213, 532
BaeI	ACNNNNGTAYC	2 cut(s)	54, 87
BanII	GRGCYC	1 cut(s)	652
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	1 cut(s)	558
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	1 cut(s)	448
BciT130I	CCWGG	1 cut(s)	527
BcnI	CCSGG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	192
BisI	GCNGC	1 cut(s)	488
BlsI	GCNGC	1 cut(s)	489
Bme1390I	CCNGG	2 cut(s)	177, 527
Bme18I	GGWCC	2 cut(s)	213, 532
BmgT120I	GGNCC	2 cut(s)	213, 532
BmiI	GGNNCC	1 cut(s)	503
BmrFI	CCNGG	2 cut(s)	177, 527
BmsI	GCATC	2 cut(s)	235, 476
BpiI	GAAGAC	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	548
Bpu10I	CCTNAGC	1 cut(s)	381
Bpu14I	TTCGAA	1 cut(s)	322
BpuEI	CTTGAG	2 cut(s)	521, 665
BpuMI	CCSGG	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	176, 216, 652
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 217, 702
Bse118I	RCCGGY	1 cut(s)	210
Bse1I	ACTGG	2 cut(s)	386, 424
BseBI	CCWGG	1 cut(s)	527
BseDI	CCNNGG	3 cut(s)	176, 216, 652
BseGI	GGATG	5 cut(s)	10, 20, 399, 525, 675
BseLI	CCNNNNNNNGG	3 cut(s)	90, 217, 702
BseMII	CTCAG	2 cut(s)	146, 395
BseNI	ACTGG	2 cut(s)	386, 424
BseXI	GCAGC	1 cut(s)	499
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	5 cut(s)	175, 210, 312, 353, 373
BsiHKAI	GWGCWC	1 cut(s)	558
BsiSI	CCGG	3 cut(s)	84, 176, 211
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	3 cut(s)	90, 217, 702
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	685
BsnI	GGCC	5 cut(s)	175, 210, 312, 353, 373
Bsp119I	TTCGAA	1 cut(s)	322
Bsp1286I	GDGCHC	2 cut(s)	558, 652
Bsp143I	GATC	2 cut(s)	222, 363
BspANI	GGCC	5 cut(s)	175, 210, 312, 353, 373
BspCNI	CTCAG	2 cut(s)	145, 394
BspLI	GGNNCC	1 cut(s)	503
BspPI	GGATC	1 cut(s)	230
BspQI	GCTCTTC	1 cut(s)	430
BspT104I	TTCGAA	1 cut(s)	322
BsrFI	RCCGGY	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	386, 424
BssAI	RCCGGY	1 cut(s)	210
BssECI	CCNNGG	3 cut(s)	176, 216, 652
BssMI	GATC	2 cut(s)	222, 363
BssT1I	CCWWGG	1 cut(s)	652
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	4 cut(s)	238, 545, 553, 705
Bst6I	CTCTTC	1 cut(s)	430
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	3 cut(s)	164, 310, 375
BstDEI	CTNAG	2 cut(s)	132, 381
BstF5I	GGATG	5 cut(s)	10, 20, 399, 525, 675
BstKTI	GATC	2 cut(s)	225, 366
BstMBI	GATC	2 cut(s)	222, 363
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 172, 464, 493
BstNI	CCWGG	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	175, 525
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	499
BstV2I	GAAGAC	1 cut(s)	516
BsuRI	GGCC	5 cut(s)	175, 210, 312, 353, 373
BtsCI	GGATG	5 cut(s)	10, 20, 399, 525, 675
Cac8I	GCNNGC	3 cut(s)	164, 310, 375
Cfr10I	RCCGGY	1 cut(s)	210
Cfr13I	GGNCC	2 cut(s)	213, 532
CpoI	CGGWCCG	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	71, 566
CspI	CGGWCCG	1 cut(s)	213
CviQI	GTAC	2 cut(s)	71, 566
DdeI	CTNAG	2 cut(s)	132, 381
DpnI	GATC	2 cut(s)	224, 365
DpnII	GATC	2 cut(s)	222, 363
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	652
Eco147I	AGGCCT	2 cut(s)	353, 373
Eco24I	GRGCYC	1 cut(s)	652
Eco47I	GGWCC	2 cut(s)	213, 532
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRII	CCWGG	1 cut(s)	525
EcoT14I	CCWWGG	1 cut(s)	652
EcoT38I	GRGCYC	1 cut(s)	652
ErhI	CCWWGG	1 cut(s)	652
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	1 cut(s)	194
Fnu4HI	GCNGC	1 cut(s)	488
FokI	GGATG	5 cut(s)	7, 17, 406, 532, 662
FriOI	GRGCYC	1 cut(s)	652
Fsp4HI	GCNGC	1 cut(s)	488
GluI	GCNGC	1 cut(s)	488
GsuI	CTGGAG	1 cut(s)	548
HaeIII	GGCC	5 cut(s)	175, 210, 312, 353, 373
HapII	CCGG	3 cut(s)	84, 176, 211
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	3 cut(s)	327, 401, 634
HpaI	GTTAAC	1 cut(s)	417
HpaII	CCGG	3 cut(s)	84, 176, 211
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	2 cut(s)	135, 217
Hpy188III	TCNNGA	1 cut(s)	538
Hpy8I	GTNNAC	1 cut(s)	417
HpyCH4III	ACNGT	4 cut(s)	238, 545, 553, 705
HpyCH4IV	ACGT	2 cut(s)	14, 513
HpyCH4V	TGCA	5 cut(s)	116, 248, 359, 377, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 172, 464, 493
HpyF3I	CTNAG	2 cut(s)	132, 381
HpySE526I	ACGT	2 cut(s)	14, 513
KspAI	GTTAAC	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	222, 363
LguI	GCTCTTC	1 cut(s)	430
LmnI	GCTCC	1 cut(s)	501
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	2 cut(s)	235, 476
MaeII	ACGT	2 cut(s)	14, 513
MalI	GATC	2 cut(s)	224, 365
MboI	GATC	2 cut(s)	222, 363
MboII	GAAGA	5 cut(s)	336, 444, 447, 463, 521
MfeI	CAATTG	1 cut(s)	117
MhlI	GDGCHC	2 cut(s)	558, 652
MluCI	AATT	1 cut(s)	117
MseI	TTAA	3 cut(s)	345, 416, 669
MspI	CCGG	3 cut(s)	84, 176, 211
MspR9I	CCNGG	2 cut(s)	177, 527
MunI	CAATTG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	685
MvaI	CCWGG	1 cut(s)	527
MwoI	GCNNNNNNNGC	4 cut(s)	145, 172, 464, 493
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	222, 363
NlaIV	GGNNCC	1 cut(s)	503
NspV	TTCGAA	1 cut(s)	322
PceI	AGGCCT	2 cut(s)	353, 373
PciSI	GCTCTTC	1 cut(s)	430
PctI	GAATGC	1 cut(s)	685
PfeI	GAWTC	3 cut(s)	327, 401, 634
PkrI	GCNGC	1 cut(s)	489
PpuMI	RGGWCCY	1 cut(s)	532
Psp5II	RGGWCCY	1 cut(s)	532
Psp6I	CCWGG	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	1 cut(s)	503
PspPI	GGNCC	2 cut(s)	213, 532
PspPPI	RGGWCCY	1 cut(s)	532
RsaI	GTAC	2 cut(s)	72, 567
RsaNI	GTAC	2 cut(s)	71, 566
Rsr2I	CGGWCCG	1 cut(s)	213
RsrII	CGGWCCG	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	430
SaqAI	TTAA	3 cut(s)	345, 416, 669
SatI	GCNGC	1 cut(s)	488
Sau3AI	GATC	2 cut(s)	222, 363
Sau96I	GGNCC	2 cut(s)	213, 532
ScrFI	CCNGG	2 cut(s)	177, 527
SduI	GDGCHC	2 cut(s)	558, 652
SfaNI	GCATC	2 cut(s)	235, 476
SfcI	CTRYAG	1 cut(s)	192
SfuI	TTCGAA	1 cut(s)	322
SinI	GGWCC	2 cut(s)	213, 532
SmlI	CTYRAG	2 cut(s)	536, 680
SmoI	CTYRAG	2 cut(s)	536, 680
Sse9I	AATT	1 cut(s)	117
SseBI	AGGCCT	2 cut(s)	353, 373
StuI	AGGCCT	2 cut(s)	353, 373
StyD4I	CCNGG	2 cut(s)	175, 525
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	4 cut(s)	238, 545, 553, 705
TaiI	ACGT	2 cut(s)	17, 516
TaqI	TCGA	2 cut(s)	322, 330
TasI	AATT	1 cut(s)	117
TfiI	GAWTC	3 cut(s)	327, 401, 634
Tru1I	TTAA	3 cut(s)	345, 416, 669
Tru9I	TTAA	3 cut(s)	345, 416, 669
TseI	GCWGC	1 cut(s)	487
TspDTI	ATGAA	2 cut(s)	464, 536
VpaK11BI	GGWCC	2 cut(s)	213, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.