Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015333

Physical Location & Seq

Genomic Coordinates Reverse (-)

18255902 .. 18256303

Gene Structure 402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0195900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAGGGAGAGTGCCAACAGCCGCAAAAATGGACGGCGGAGGAGGAAGAAGCCCTATTAGCTGGAGTAGCAAAGCACGGAGTGGGCAAGTGGAAGATCATTCTTGAAGATTCCGAGTTTGGCCCTATACTCACTCATCGCTCCAACCACAAACTCAAGTATAAGTGGAGGCGCTGGAGTGTTAGACCTTCTGGAAACTCACCGTTTATGGCTGATGAAGCAGCCAAGGAGGCCCAGATAGTTTCAGACACCGAGGAGGAACAGAGAGTTTCGGAGATGAAGGAGATACAGGAAGTTAATTCGGAGACAAAGGAGATGCAGAGAATTTCGAAGTCTGCAGAAGACACCGAGTCAATGCTACAGCTAGCCAGTGAGATTTATGAACGATGTTCAAGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

133

Amino Acids

15.3

Weight (kDa)

5.1

Isoelectric Point (pI)

66.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	9 - 59	1.3e-08	Myb-like DNA-binding domain
HTH_CHD1_Hrp3	PF23588	10 - 41	7.2e-06	ATP-dependent helicase CHD1-2/hrp3 HTH domain
Myb_DNA-bind_6	PF13921	11 - 63	1.3e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39810
fragaria_vesca	FvH4_1g21490
malus_domestica	MD15G1329100.v1.1
prunus_persica	Prupe.6G179800_v2.0.a1
pyrus_communis	pycom01g05230 pycom15g29710 pycom15g29720
rosa_chinensis	RchiOBHm_Chr2g0115371
rosa_laevigata	RLG00000018180
rosa_roxburghii	Rroxscaffold_2G00130860
rosa_rugosa	Rorug02G0195900
rosa_samantha	Rh2AG254300 Rh2BG264500 Rh2CG259000 Rh2DG262400
rosa_wichuraiana	Rw2G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	23, 38
AcsI	RAATTY	1 cut(s)	324
AdeI	CACNNNGTG	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	107, 393
AhdI	GACNNNNNGTC	1 cut(s)	349
AluBI	AGCT	2 cut(s)	62, 364
AluI	AGCT	2 cut(s)	62, 364
Alw26I	GTCTC	1 cut(s)	299
AoxI	GGCC	2 cut(s)	121, 231
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	2 cut(s)	122, 232
AsuHPI	GGTGA	1 cut(s)	192
AsuII	TTCGAA	1 cut(s)	329
AsuNHI	GCTAGC	1 cut(s)	364
BbsI	GAAGAC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	2 cut(s)	336, 359
BfoI	RGCGCY	1 cut(s)	175
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	2 cut(s)	23, 222
BlsI	GCNGC	2 cut(s)	24, 223
BmeRI	GACNNNNNGTC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	122, 232
BmsI	GCATC	1 cut(s)	306
BmtI	GCTAGC	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	348
BpmI	CTGGAG	2 cut(s)	84, 196
Bpu14I	TTCGAA	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	225, 252
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	225, 252
BseNI	ACTGG	1 cut(s)	369
BseRI	GAGGAG	2 cut(s)	56, 269
BseXI	GCAGC	1 cut(s)	233
BshFI	GGCC	2 cut(s)	123, 233
BsmAI	GTCTC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	123, 233
Bsp119I	TTCGAA	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	96
BspACI	CCGC	2 cut(s)	23, 38
BspANI	GGCC	2 cut(s)	123, 233
BspMAI	CTGCAG	1 cut(s)	340
BspOI	GCTAGC	1 cut(s)	368
BspT104I	TTCGAA	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	369
BssECI	CCNNGG	2 cut(s)	225, 252
BssMI	GATC	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	204
BstBI	TTCGAA	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	366
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 68, 218, 230
BstSFI	CTRYAG	2 cut(s)	336, 359
BstV1I	GCAGC	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	123, 233
BtgZI	GCGATG	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	366
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	2 cut(s)	122, 232
CviJI	RGCY	9 cut(s)	22, 53, 62, 123, 212, 224, 233, 364, 368
CviKI_1	RGCY	9 cut(s)	22, 53, 62, 123, 212, 224, 233, 364, 368
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
DraIII	CACNNNGTG	1 cut(s)	82
DriI	GACNNNNNGTC	1 cut(s)	349
Eam1105I	GACNNNNNGTC	1 cut(s)	349
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaiI	YATR	4 cut(s)	128, 162, 209, 381
Fnu4HI	GCNGC	2 cut(s)	23, 222
Fsp4HI	GCNGC	2 cut(s)	23, 222
FspBI	CTAG	1 cut(s)	365
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	2 cut(s)	23, 222
GsuI	CTGGAG	2 cut(s)	84, 196
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	123, 233
HhaI	GCGC	1 cut(s)	174
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	110, 350
HphI	GGTGA	1 cut(s)	192
Hpy188I	TCNGA	4 cut(s)	115, 247, 274, 304
Hpy188III	TCNNGA	3 cut(s)	104, 192, 393
HpyAV	CCTTC	2 cut(s)	198, 274
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	319, 338
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 68, 218, 230
HspAI	GCGC	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	6 cut(s)	48, 160, 177, 248, 275, 382
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	1 cut(s)	365
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	4 cut(s)	59, 106, 119, 353
MluCI	AATT	2 cut(s)	298, 324
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	7 cut(s)	34, 37, 162, 223, 247, 250, 389
MseI	TTAA	1 cut(s)	297
MwoI	GCNNNNNNNGC	4 cut(s)	59, 68, 218, 230
NdeII	GATC	1 cut(s)	96
NheI	GCTAGC	1 cut(s)	364
NspV	TTCGAA	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	2 cut(s)	24, 223
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PspPI	GGNCC	2 cut(s)	122, 232
PstI	CTGCAG	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	23, 222
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	2 cut(s)	122, 232
SchI	GAGTC	1 cut(s)	359
SetI	ASST	3 cut(s)	64, 190, 366
SfaNI	GCATC	1 cut(s)	306
SfcI	CTRYAG	2 cut(s)	336, 359
SfuI	TTCGAA	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	2 cut(s)	298, 324
SsiI	CCGC	2 cut(s)	23, 38
SspMI	CTAG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	329
TasI	AATT	2 cut(s)	298, 324
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	3 cut(s)	231, 293, 396
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	376
XapI	RAATTY	1 cut(s)	324
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.