Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004432

Physical Location & Seq

Genomic Coordinates Reverse (-)

26699319 .. 26701523

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGACCACGACGACTTCCGGACCATCTTAGAAAGCTCGGGAGTGGATGTATGGACGTTCATGGACACTGCCATAGCTGTCGCTTTGGCCGATTATGGCACTGAGCTCAAGCACCGGAGGGATGGCATTGTCGAGCGCCTCTATGCCACAGCTTCTGTTCCACCTCAATGCCCGAACTGCGATGCTGATGGGCCTAATGGGCCCAATGTTAACCAGCCCAAAGCAGTTTCACCGTACACTCCGCAGTCTGTTGGTGGAGATGGTGGTGAGGAGGATGAGGAGGATGAGGAGGAGTTGGATCCCTATGCAGGGTTGTTTGATGATGAGACGAAGAATATTCTAGACATCAAGAAGCATCTTGAGGATCCTTATCAGTCTGAGGATACTCTGGTTGAGTTGCTTCAAAGTCTAGCAGATATGGAAATATCAGTCCAAGAACTCAAGGAGGCTGATATTGGAAAGCGTGTGAGTCAATTGCGGAAGCAGCATCCAAGCGATGTTGTTAGGAGATTGGCAAAGCAAATTATCAATAAATGGAAAGTTGATGAAGACTCACCTCAGCAGAAAATTCCCCAGAATGGTCTTCACCAGGTTCCTGATTTTGCATACTCTCCAAATCCTCACAATGGGAGTTCTGGGTCAGACAAGAACTATTCAGAACCAGAACGCAAGCCAAAGGCAGTTCCTAGGAGGATTGCTCCACCAAAACCTACACAATCGACCCCTGTGTCTGCTTCTGCTCCTCAAAATAGACAGATGGGGCAGAAGGAAAGCGATTTAGACTCTGATAGATTGGCTTCTGCAAGAAGACGACTTCAGGCAAATTATAGAGAAGCTGAAAATGGTTTGCTGCTCTTTAACTTTCGACTTCTTGTGGAGGAGGAGGAGGAGGAGGCGGAAGTGGCTCTCATCAAGGCAGGCATTGGTGAAAATGGGCAGAGCCTCACACTCGACAGATATATAATATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0070449 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

324

Amino Acids

36.04

Weight (kDa)

4.67

Isoelectric Point (pI)

59.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med26	PF08711	132 - 180	1.2e-12	TFIIS helical bundle-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09850 AT5G09850 AT5G09850 AT5G09850 AT5G09850
fragaria_vesca	FvH4_1g23670 FvH4_1g23670 FvH4_1g23670 FvH4_1g23670
malus_domestica	MD01G1024900.v1.1 MD15G1319400.v1.1
prunus_persica	Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1
pyrus_communis	pycom01g05280 pycom15g29740
rosa_chinensis	RchiOBHm_Chr2g0119271
rosa_laevigata	RLG00000018461
rosa_multiflora	Rmu_co8400383.1_g000001 Rmu_sc0002788.1_g000002 Rmu_ssc0000264.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124360
rosa_rugosa	Rorug02G0221400 Rorug02G0221400
rosa_samantha	Rh2AG279500 Rh2BG290200 Rh2DG285500 Rh2DG304500
rosa_wichuraiana	Rw2G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	727
AccIII	TCCGGA	1 cut(s)	18
AciI	CCGC	3 cut(s)	242, 478, 896
AclWI	GGATC	4 cut(s)	293, 306, 359, 372
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	567
AcuI	CTGAAG	1 cut(s)	800
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	4 cut(s)	308, 309, 578, 626
AgsI	TTSAA	1 cut(s)	404
AjnI	CCWGG	1 cut(s)	588
AluBI	AGCT	5 cut(s)	36, 77, 106, 152, 836
AluI	AGCT	5 cut(s)	36, 77, 106, 152, 836
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	4 cut(s)	293, 306, 359, 372
AlwNI	CAGNNNCTG	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	37
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	3 cut(s)	87, 191, 200
ApaI	GGGCCC	1 cut(s)	204
ApeKI	GCWGC	2 cut(s)	484, 850
ApoI	RAATTY	1 cut(s)	567
AspA2I	CCTAGG	1 cut(s)	686
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	5 cut(s)	4, 21, 191, 200, 201
AsuHPI	GGTGA	5 cut(s)	222, 278, 546, 578, 938
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	4, 21
AvrII	CCTAGG	1 cut(s)	686
BaeGI	GKGCMC	1 cut(s)	204
BaeI	ACNNNNGTAYC	2 cut(s)	375, 408
BamHI	GGATCC	2 cut(s)	298, 364
BanII	GRGCYC	2 cut(s)	108, 204
BbsI	GAAGAC	3 cut(s)	555, 575, 814
Bbv12I	GWGCWC	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	558
BbvI	GCAGC	2 cut(s)	496, 837
BccI	CCATC	5 cut(s)	32, 116, 182, 254, 751
BciT130I	CCWGG	1 cut(s)	590
BciVI	GTATCC	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	3 cut(s)	341, 410, 687
BfoI	RGCGCY	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	376
BglI	GCCNNNNNGGC	1 cut(s)	199
BisI	GCNGC	2 cut(s)	485, 851
BlnI	CCTAGG	1 cut(s)	686
BlsI	GCNGC	2 cut(s)	486, 852
Bme1390I	CCNGG	1 cut(s)	590
Bme18I	GGWCC	2 cut(s)	4, 21
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	5 cut(s)	4, 21, 191, 200, 201
BmiI	GGNNCC	4 cut(s)	202, 300, 366, 594
BmrFI	CCNGG	1 cut(s)	590
BmsI	GCATC	3 cut(s)	172, 364, 496
BpiI	GAAGAC	3 cut(s)	555, 575, 814
BplI	GAGNNNNNCTC	2 cut(s)	682, 714
Bpu10I	CCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	3 cut(s)	92, 380, 425
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	686
BsaWI	WCCGGW	2 cut(s)	18, 114
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	4 cut(s)	308, 309, 578, 626
Bse8I	GATNNNNATC	1 cut(s)	369
BseAI	TCCGGA	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	590
BseDI	CCNNGG	1 cut(s)	686
BseGI	GGATG	5 cut(s)	52, 127, 280, 289, 487
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	4 cut(s)	308, 309, 578, 626
BseMII	CTCAG	3 cut(s)	93, 369, 572
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	496, 837
BshFI	GGCC	3 cut(s)	89, 193, 202
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	19, 115
BslI	CCNNNNNNNGG	4 cut(s)	308, 309, 578, 626
BsmAI	GTCTC	1 cut(s)	320
BsmBI	CGTCTC	1 cut(s)	320
BsnI	GGCC	3 cut(s)	89, 193, 202
BsoBI	CYCGRG	1 cut(s)	37
Bsp120I	GGGCCC	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	108, 204
Bsp13I	TCCGGA	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	298, 364
BspACI	CCGC	3 cut(s)	242, 478, 896
BspANI	GGCC	3 cut(s)	89, 193, 202
BspCNI	CTCAG	3 cut(s)	94, 370, 571
BspEI	TCCGGA	1 cut(s)	18
BspLI	GGNNCC	4 cut(s)	202, 300, 366, 594
BspPI	GGATC	4 cut(s)	293, 306, 359, 372
BssECI	CCNNGG	1 cut(s)	686
BssMI	GATC	2 cut(s)	298, 364
BssT1I	CCWWGG	1 cut(s)	686
Bst2UI	CCWGG	1 cut(s)	590
Bst4CI	ACNGT	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	671, 919
BstDEI	CTNAG	4 cut(s)	28, 102, 378, 558
BstF5I	GGATG	5 cut(s)	52, 127, 280, 289, 487
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	2 cut(s)	301, 367
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	2 cut(s)	298, 364
BstMWI	GCNNNNNNNGC	4 cut(s)	177, 199, 484, 902
BstNI	CCWGG	1 cut(s)	590
BstSCI	CCNGG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	496, 837
BstV2I	GAAGAC	3 cut(s)	555, 575, 814
BstX2I	RGATCY	2 cut(s)	298, 364
BstYI	RGATCY	2 cut(s)	298, 364
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	3 cut(s)	89, 193, 202
BtgZI	GCGATG	2 cut(s)	195, 510
BtsCI	GGATG	5 cut(s)	52, 127, 280, 289, 487
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	66, 99
Cac8I	GCNNGC	2 cut(s)	671, 919
CaiI	CAGNNNCTG	1 cut(s)	155
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	5 cut(s)	4, 21, 191, 200, 201
CsiI	ACCWGGT	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	1 cut(s)	61
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	4 cut(s)	28, 102, 378, 558
DpnI	GATC	2 cut(s)	300, 366
DpnII	GATC	2 cut(s)	298, 364
DrdI	GACNNNNNNGTC	1 cut(s)	727
DseDI	GACNNNNNNGTC	1 cut(s)	727
EaeI	YGGCCR	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	911
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	686
Eco24I	GRGCYC	2 cut(s)	108, 204
Eco47I	GGWCC	2 cut(s)	4, 21
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	800
Eco88I	CYCGRG	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	588
EcoT14I	CCWWGG	1 cut(s)	686
EcoT38I	GRGCYC	2 cut(s)	108, 204
ErhI	CCWWGG	1 cut(s)	686
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	1 cut(s)	64
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	485, 851
FokI	GGATG	5 cut(s)	59, 134, 287, 296, 474
FriOI	GRGCYC	2 cut(s)	108, 204
Fsp4HI	GCNGC	2 cut(s)	485, 851
FspBI	CTAG	3 cut(s)	341, 410, 687
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	2 cut(s)	485, 851
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	3 cut(s)	89, 193, 202
HapII	CCGG	2 cut(s)	19, 115
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	3 cut(s)	469, 551, 782
HpaI	GTTAAC	1 cut(s)	211
HpaII	CCGG	2 cut(s)	19, 115
HphI	GGTGA	5 cut(s)	222, 278, 546, 578, 938
Hpy166II	GTNNAC	2 cut(s)	211, 237
Hpy188I	TCNGA	4 cut(s)	379, 643, 658, 787
Hpy188III	TCNNGA	6 cut(s)	19, 39, 341, 349, 359, 596
Hpy8I	GTNNAC	2 cut(s)	211, 237
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	760
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	3 cut(s)	308, 605, 803
HpyF10VI	GCNNNNNNNGC	4 cut(s)	177, 199, 484, 902
HpyF3I	CTNAG	4 cut(s)	28, 102, 378, 558
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	136
Kpn2I	TCCGGA	1 cut(s)	18
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	298, 364
LmnI	GCTCC	2 cut(s)	703, 745
Lsp1109I	GCAGC	2 cut(s)	496, 837
LweI	GCATC	3 cut(s)	172, 364, 496
MabI	ACCWGGT	1 cut(s)	588
MaeI	CTAG	3 cut(s)	341, 410, 687
MaeII	ACGT	1 cut(s)	56
MalI	GATC	2 cut(s)	300, 366
MboI	GATC	2 cut(s)	298, 364
MboII	GAAGA	4 cut(s)	343, 560, 575, 819
MfeI	CAATTG	1 cut(s)	473
MflI	RGATCY	2 cut(s)	298, 364
MhlI	GDGCHC	2 cut(s)	108, 204
MluCI	AATT	4 cut(s)	473, 522, 567, 823
MlyI	GAGTC	3 cut(s)	478, 545, 776
MmeI	TCCRAC	1 cut(s)	276
MroI	TCCGGA	1 cut(s)	18
MseI	TTAA	2 cut(s)	210, 858
MslI	CAYNNNNRTG	1 cut(s)	166
MspI	CCGG	2 cut(s)	19, 115
MspR9I	CCNGG	1 cut(s)	590
MunI	CAATTG	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	590
MwoI	GCNNNNNNNGC	4 cut(s)	177, 199, 484, 902
NdeII	GATC	2 cut(s)	298, 364
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	4 cut(s)	202, 300, 366, 594
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	486, 852
PleI	GAGTC	3 cut(s)	477, 545, 776
PpsI	GAGTC	3 cut(s)	477, 545, 776
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	588
PspN4I	GGNNCC	4 cut(s)	202, 300, 366, 594
PspOMI	GGGCCC	1 cut(s)	200
PspPI	GGNCC	5 cut(s)	4, 21, 191, 200, 201
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	2 cut(s)	298, 364
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	166
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	210, 858
SatI	GCNGC	2 cut(s)	485, 851
Sau3AI	GATC	2 cut(s)	298, 364
Sau96I	GGNCC	5 cut(s)	4, 21, 191, 200, 201
SchI	GAGTC	3 cut(s)	478, 545, 776
ScrFI	CCNGG	1 cut(s)	590
SduI	GDGCHC	2 cut(s)	108, 204
SexAI	ACCWGGT	1 cut(s)	588
SfaNI	GCATC	3 cut(s)	172, 364, 496
SfiI	GGCCNNNNNGGCC	1 cut(s)	199
SinI	GGWCC	2 cut(s)	4, 21
SmiMI	CAYNNNNRTG	1 cut(s)	166
SmlI	CTYRAG	3 cut(s)	107, 359, 440
SmoI	CTYRAG	3 cut(s)	107, 359, 440
Sse9I	AATT	4 cut(s)	473, 522, 567, 823
SsiI	CCGC	3 cut(s)	242, 478, 896
SspI	AATATT	2 cut(s)	337, 966
SspMI	CTAG	3 cut(s)	341, 410, 687
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	588
StyI	CCWWGG	1 cut(s)	686
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	4 cut(s)	132, 719, 865, 951
TasI	AATT	4 cut(s)	473, 522, 567, 823
Tru1I	TTAA	2 cut(s)	210, 858
Tru9I	TTAA	2 cut(s)	210, 858
TscAI	CASTG	2 cut(s)	73, 106
TseI	GCWGC	2 cut(s)	484, 850
TspDTI	ATGAA	2 cut(s)	49, 561
TspRI	CASTG	2 cut(s)	73, 106
VpaK11BI	GGWCC	2 cut(s)	4, 21
XapI	RAATTY	1 cut(s)	567
XbaI	TCTAGA	1 cut(s)	340
XmaJI	CCTAGG	1 cut(s)	686
XspI	CTAG	3 cut(s)	341, 410, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.