Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010162

Physical Location & Seq

Genomic Coordinates Reverse (-)

29653762 .. 29655648

Gene Structure 1887 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAATTAAGTCCTAAAAACCTGGCAGAGACCTTGAAATCACAAGGTAATAGGGCCATGCAATCAAAGCTGTACCCCAAGGCAATTGAGTTGTATGATTGTGCCATTGCCCTTTGTGAAAGTAATGCCATTTACTACTGTAACAGGGCGGCTGCTTACACTCAGATGCACAAATATACTGAAGCAATCGAAGATTGCCTTAAATCAATTGAAATCGACCCAAATTACAGCAAGGCATATAGTCGTCTGGGATTAGCTTACTATGCACAGGGGAACTACCATGACGCTATAGAGAAAGGATTTAAGAAAGTGTTGCAATTGGATCCGAACAATGAAGCTGTCAAAGAAAACATTCGGGTGGCTGATCAGAAACTGAAAGATGAACAACGACGAGCGGAATCTGGTCAGAGCACAAGTTCGTTTAGTAGCAGTAATGGTTCAGAACACACCAACCAGTCTACCGAAGAGTCAAGAAACCATGCTGCACCGCCTCCATTCGGTTCTATGCCCTTCAATACAGGTGCCCTTCCCGCTGAATTTGCCAGTATGTTCATGAACATGGCTGCAAATGCATACCAAGGACAACATTCTCAAGATAGCCAAGGAAATGATAGCAGCACCGACGGATCTGATGAACCAGGAGTAAGGATTGGGGGTAACATCAACTTGAATTTCGGAGAACAAATGCCTGAGGAACTATCTGGAGCTTTGATCGATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010243 GO:0010256 GO:0010498 GO:0010605 GO:0016043 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0033036 GO:0033365 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042176 GO:0042177 GO:0042221 GO:0043161 GO:0043170 GO:0043621 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045048 GO:0045184 GO:0045861 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051205 GO:0051234 GO:0051246 GO:0051248 GO:0051603 GO:0051641 GO:0051716 GO:0060255 GO:0061024 GO:0061136 GO:0065007 GO:0070727 GO:0071704 GO:0071816 GO:0071840 GO:0072657 GO:0080090 GO:0080134 GO:0080135 GO:0090150 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901799 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1904292 GO:1904293 GO:1905897 GO:2000058 GO:2000059

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SGTA_dimer TPR_1 TPR_11 TPR_17 TPR_2

Protein Analysis

241

Amino Acids

26.42

Weight (kDa)

5.01

Isoelectric Point (pI)

61.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_11	PF13414	16 - 55	4.5e-06	TPR repeat
TPR_1	PF00515	44 - 76	4.8e-10	Tetratricopeptide repeat
TPR_12	PF13424	44 - 98	4.2e-07	Tetratricopeptide repeat
TPR_11	PF13414	52 - 91	1.6e-08	TPR repeat
TPR_17	PF13431	66 - 98	6.3e-07	Tetratricopeptide repeat
TPR_1	PF00515	78 - 111	6.6e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08320 AT4G08320
fragaria_vesca	FvH4_2g26830 FvH4_2g26840
malus_domestica	MD15G1349900.v1.1
prunus_persica	Prupe.1G499100_v2.0.a1 Prupe.1G499100_v2.0.a1 Prupe.1G499100_v2.0.a1
pyrus_communis	pycom15g31300
rosa_chinensis	RchiOBHm_Chr6g0295691
rosa_laevigata	RLG00000011775
rosa_multiflora	Rmu_sc0007372.1_g000005 Rmu_sc0012497.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172210
rosa_rugosa	Rorug06G0253300 Rorug06G0253400
rosa_samantha	Rh6AG366800 Rh6BG374700 Rh6CG381000 Rh6DG367800
rosa_wichuraiana	Rw6G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	521
AccBSI	CCGCTC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	458
AciI	CCGC	4 cut(s)	149, 395, 488, 531
AclWI	GGATC	3 cut(s)	317, 330, 634
AcsI	RAATTY	2 cut(s)	536, 670
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	4 cut(s)	37, 212, 514, 670
AjnI	CCWGG	2 cut(s)	21, 637
AluBI	AGCT	4 cut(s)	70, 257, 338, 707
AluI	AGCT	4 cut(s)	70, 257, 338, 707
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	3 cut(s)	317, 330, 634
AlwNI	CAGNNNCTG	1 cut(s)	373
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	4 cut(s)	152, 482, 563, 615
ApoI	RAATTY	2 cut(s)	536, 670
Asp700I	GAANNNNTTC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	54
AxyI	CCTNAGG	1 cut(s)	690
BaeGI	GKGCMC	1 cut(s)	526
BamHI	GGATCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	521
Bbv12I	GWGCWC	1 cut(s)	413
BbvI	GCAGC	4 cut(s)	139, 469, 550, 627
BciT130I	CCWGG	2 cut(s)	23, 639
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	5 cut(s)	150, 153, 483, 564, 616
BlsI	GCNGC	5 cut(s)	151, 154, 484, 565, 617
Bme1390I	CCNGG	2 cut(s)	23, 639
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	2 cut(s)	324, 523
BmrFI	CCNGG	2 cut(s)	23, 639
BmsI	GCATC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	576
Bsa29I	ATCGAT	1 cut(s)	714
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	78, 577, 601
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	2 cut(s)	454, 543
Bse21I	CCTNAGG	1 cut(s)	690
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	23, 639
BseCI	ATCGAT	1 cut(s)	714
BseDI	CCNNGG	3 cut(s)	78, 577, 601
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	2 cut(s)	176, 681
BseNI	ACTGG	2 cut(s)	454, 543
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	4 cut(s)	139, 469, 550, 627
BsgI	GTGCAG	1 cut(s)	468
Bsh1285I	CGRYCG	1 cut(s)	718
BshFI	GGCC	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	521
BshVI	ATCGAT	1 cut(s)	714
BsiEI	CGRYCG	1 cut(s)	718
BsiHKAI	GWGCWC	1 cut(s)	413
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	413, 526
Bsp143I	GATC	5 cut(s)	322, 364, 626, 711, 715
BspACI	CCGC	4 cut(s)	149, 395, 488, 531
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	175, 682
BspDI	ATCGAT	1 cut(s)	714
BspHI	TCATGA	1 cut(s)	552
BspLI	GGNNCC	2 cut(s)	324, 523
BspPI	GGATC	3 cut(s)	317, 330, 634
BspT107I	GGYRCC	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	105
BsrI	ACTGG	2 cut(s)	454, 543
BssECI	CCNNGG	3 cut(s)	78, 577, 601
BssMI	GATC	5 cut(s)	322, 364, 626, 711, 715
BssT1I	CCWWGG	3 cut(s)	78, 577, 601
Bst2UI	CCWGG	2 cut(s)	23, 639
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	459
BstDEI	CTNAG	2 cut(s)	162, 690
BstKTI	GATC	5 cut(s)	325, 367, 629, 714, 718
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	5 cut(s)	322, 364, 626, 711, 715
BstMCI	CGRYCG	1 cut(s)	718
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 263, 530, 539, 569
BstNI	CCWGG	2 cut(s)	23, 639
BstSCI	CCNGG	2 cut(s)	21, 637
BstSFI	CTRYAG	1 cut(s)	288
BstSLI	GKGCMC	1 cut(s)	526
BstV1I	GCAGC	4 cut(s)	139, 469, 550, 627
BstX2I	RGATCY	2 cut(s)	322, 626
BstYI	RGATCY	2 cut(s)	322, 626
Bsu15I	ATCGAT	1 cut(s)	714
Bsu36I	CCTNAGG	1 cut(s)	690
BsuRI	GGCC	1 cut(s)	56
BsuTUI	ATCGAT	1 cut(s)	714
CaiI	CAGNNNCTG	1 cut(s)	373
CciI	TCATGA	1 cut(s)	552
Cfr13I	GGNCC	1 cut(s)	54
ClaI	ATCGAT	1 cut(s)	714
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	5 cut(s)	58, 281, 479, 553, 559
CviJI	RGCY	9 cut(s)	56, 70, 152, 257, 338, 362, 563, 600, 707
CviKI_1	RGCY	9 cut(s)	56, 70, 152, 257, 338, 362, 563, 600, 707
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	2 cut(s)	162, 690
DpnI	GATC	5 cut(s)	324, 366, 628, 713, 717
DpnII	GATC	5 cut(s)	322, 364, 626, 711, 715
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco130I	CCWWGG	3 cut(s)	78, 577, 601
Eco31I	GGTCTC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	690
EcoRII	CCWGG	2 cut(s)	21, 637
EcoT14I	CCWWGG	3 cut(s)	78, 577, 601
EcoT22I	ATGCAT	1 cut(s)	574
ErhI	CCWWGG	3 cut(s)	78, 577, 601
FaeI	CATG	5 cut(s)	61, 284, 482, 556, 562
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	5 cut(s)	57, 280, 478, 552, 558
FauI	CCCGC	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	5 cut(s)	150, 153, 483, 564, 616
Fsp4HI	GCNGC	5 cut(s)	150, 153, 483, 564, 616
GluI	GCNGC	5 cut(s)	150, 153, 483, 564, 616
GsuI	CTGGAG	1 cut(s)	723
HaeIII	GGCC	1 cut(s)	56
HgaI	GACGC	1 cut(s)	293
Hin1II	CATG	5 cut(s)	61, 284, 482, 556, 562
HinfI	GANTC	2 cut(s)	398, 467
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	7 cut(s)	165, 327, 369, 408, 442, 631, 677
Hpy188III	TCNNGA	4 cut(s)	471, 553, 593, 702
Hpy8I	GTNNAC	1 cut(s)	459
Hpy99I	CGWCG	2 cut(s)	393, 626
HpyAV	CCTTC	2 cut(s)	520, 536
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	7 cut(s)	61, 169, 266, 316, 485, 566, 572
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 263, 530, 539, 569
HpyF3I	CTNAG	2 cut(s)	162, 690
Hsp92II	CATG	5 cut(s)	61, 284, 482, 556, 562
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	5 cut(s)	322, 364, 626, 711, 715
LmnI	GCTCC	1 cut(s)	704
Lsp1109I	GCAGC	4 cut(s)	139, 469, 550, 627
LweI	GCATC	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	140, 656
MalI	GATC	5 cut(s)	324, 366, 628, 713, 717
MbiI	CCGCTC	1 cut(s)	395
MboI	GATC	5 cut(s)	322, 364, 626, 711, 715
MboII	GAAGA	2 cut(s)	203, 476
MfeI	CAATTG	3 cut(s)	84, 207, 317
MflI	RGATCY	2 cut(s)	322, 626
MhlI	GDGCHC	2 cut(s)	413, 526
MluCI	AATT	7 cut(s)	5, 84, 207, 223, 317, 536, 670
MlyI	GAGTC	1 cut(s)	476
MnlI	CCTC	2 cut(s)	501, 685
Mph1103I	ATGCAT	1 cut(s)	574
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	3 cut(s)	8, 201, 303
MslI	CAYNNNNRTG	3 cut(s)	164, 356, 557
MspA1I	CMGCKG	1 cut(s)	533
MspR9I	CCNGG	2 cut(s)	23, 639
MunI	CAATTG	3 cut(s)	84, 207, 317
MvaI	CCWGG	2 cut(s)	23, 639
MwoI	GCNNNNNNNGC	5 cut(s)	67, 263, 530, 539, 569
NdeII	GATC	5 cut(s)	322, 364, 626, 711, 715
NlaIII	CATG	5 cut(s)	61, 284, 482, 556, 562
NlaIV	GGNNCC	2 cut(s)	324, 523
NsiI	ATGCAT	1 cut(s)	574
PagI	TCATGA	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	5 cut(s)	151, 154, 484, 565, 617
Ple19I	CGATCG	1 cut(s)	718
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
Psp6I	CCWGG	2 cut(s)	21, 637
PspGI	CCWGG	2 cut(s)	21, 637
PspN4I	GGNNCC	2 cut(s)	324, 523
PspPI	GGNCC	1 cut(s)	54
PstNI	CAGNNNCTG	1 cut(s)	373
PsuI	RGATCY	2 cut(s)	322, 626
PvuI	CGATCG	1 cut(s)	718
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
RseI	CAYNNNNRTG	3 cut(s)	164, 356, 557
SaqAI	TTAA	3 cut(s)	8, 201, 303
SatI	GCNGC	5 cut(s)	150, 153, 483, 564, 616
Sau3AI	GATC	5 cut(s)	322, 364, 626, 711, 715
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	2 cut(s)	23, 639
SduI	GDGCHC	2 cut(s)	413, 526
SetI	ASST	8 cut(s)	24, 35, 49, 72, 259, 340, 523, 709
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	3 cut(s)	164, 356, 557
SmlI	CTYRAG	1 cut(s)	591
SmoI	CTYRAG	1 cut(s)	591
Sse9I	AATT	7 cut(s)	5, 84, 207, 223, 317, 536, 670
SsiI	CCGC	4 cut(s)	149, 395, 488, 531
StyD4I	CCNGG	2 cut(s)	21, 637
StyI	CCWWGG	3 cut(s)	78, 577, 601
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	3 cut(s)	189, 216, 714
TasI	AATT	7 cut(s)	5, 84, 207, 223, 317, 536, 670
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	3 cut(s)	8, 201, 303
Tru9I	TTAA	3 cut(s)	8, 201, 303
TseI	GCWGC	4 cut(s)	152, 482, 563, 615
TspDTI	ATGAA	5 cut(s)	348, 396, 541, 569, 648
TspGWI	ACGGA	1 cut(s)	639
XapI	RAATTY	2 cut(s)	536, 670
XmiI	GTMKAC	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	351
Zsp2I	ATGCAT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.