Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004358

Physical Location & Seq

Genomic Coordinates Forward (+)

34691134 .. 34698232

Gene Structure 7099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2712 bp

ATGGAAAACTCGGACTCTGACGAGCCAGAGAAGAAGAGGCCTCATTTGAACTCCCTTTCCCCCACCATGGCCCGTAGCTCCTCCACCTCTCCGCCCAATAACCACAGCGTCGATGCATCAGTTCTCCAGATACAGAACCAGCAACTTAATCAGCTGGTAGACAAACAGAAGCTTGACTTGCAAGATCTTGAAGCGAAAATTCAGGAACTGAAGGATAAGCAAGGTTCTTATGATGATTTCTTAATCACAGTGAATAAACTATGGAATCAGTTGGTTGATGATCTAATTCTGCTTGGACTATGTACTGGAGGAGCCCAAAATGCTTTAGAAGTTTTGGATGGTGCTGATTATTCTCGTGGTTCAATTCCATCATGTTCTGCAGAAGAGATGTTTCTTTTTAGACTCTTACAACAAGATTCTTTAGAAGCTAATGGCAATGATGAAATTGTTAAATATGTTGAAGAAACTCTGGCTTTGCGGCATACGTCTACTATGGACTTGTTAGAACTCTTAGAACAGCCAATTTATGCTCATAGGGAAAAAACAAGGAACATATCCCACACTTTGGATGGAAAGATATCTTCAGAAGATGCTGTCATCCAGTTTTCTAAAATTGATGATATGATGGAGAGGGAGGTTAAAAATCTACGTGAAGCGATTGATATTCTTCACCTGAAGCATAAAGAGTATGCTGGCATAATTCGGACTTACCTCAGCAGCCATTCAAGAGATCAGTCTGAAATTAGGCGCATTACAGGTGAGCTGGATGACAAAATGGCTGACCTAGAGTTGAAGAGAAGGAAACTAGTGAATCTGAAAATGCAAAAGGATGTTGCATCTGGGGTGCAGAACCATACTTCTAGTGCACTTAATGGAACCCTGTCACCTGAAAAATCAACAGAAGGGACAATCAGCTTGCGAGAACTTAGAAATTCAATCGAGGAAACAAAGATACTAGAAGCTGACCGCCTTTCTGAGTATCAAGAGGCACATGAAGAAAATTTAGTGCTGTCAAAACAATTGCAAGAATTTCAGGATGAAGTGGAGGATGACAAATATGTACATTCATCGAGACTGTACACTATGCTAAATGATCAACTCCAACATTGGAATGCAGAATTGGACCAATACAAATCAATGATTGATTCTTTGCAGGCTGACAGGGCTCTTGTTGTGAGAAGGGAAAAGGAACTAAATTTCAAATTAGAGTCAGTAGATGCAGTTAGGAATGTCATTGACAATTCTGATTCTAGGATTGAAGAACTAGAGCTTCAGCTGCAGAAGTGTGTAATTGAAAAAAATGACTTTGAGATAAACATGGAAGAAGCTGTACAGGATTCAGGACGAAAGGACATTATAGCAGAGTTCCGTGTGATGGCCTCATCGTTGTCTAAAGAAATGGGAATGGTGGAAACTCAGTTGAAGCGGTGGAAGGAAACAGCTCATGAAACACTTTCTTTACGTGACAAAGCCCAATCATTAAAAGCTTCATTAAGTACAAAGACAAATGAGCAAAAGAGCCTTGTGGACAAGTGTGGCAAACAGGTGATAGAGATAAAGTCTCTTAAGGCATCGATTGAGAAGTTGCAGAAAGAAAAACTGGAACTGCAGATCTTCTTAGACATGTATGCACAGGAAAGCTATGAAAACAGAGACTTGATGGAAGTCAAAGAATCAGAGCGCAGAGCTTACTCTCAAGCTGAAATGTTCAAGAATGCATTGGATGAACATAGTCTAGAATTGAGGGTGAAAGCAGCCAATGAAGCGGAGGCTGCTTGTCAGCAAAGGCTTTCTGCTACTGAAGCTGAAATAACTGAATTCAGTGCCAAACTTGATGCATCAGAGCGGGATGTTATGGAGCTTACTGAGGCTATTGGAATTAAAGACAAGGAGGCAGAGGCTTATATATCTGAAATTGAGGTGCCGTATTTATACTTATCTCGTAGTTCATATCTGCAGACCATTGGTCAGGCATATGAAGATATGCAGACACAAAACCAGCATCTGTTGCAGCAGGTGACTGAGAGGGATGACTACAATATCAAGCTCGTTTCGGAGAGTGTGAAGACAAAGCAAGCACAGAGCTATGTACTCTCTGATAAGCAGGCATTGGCGAAACAACTTCAACAAGTAAACACATCATTAGAATCTCTAAACATGAGAGTTTCCTATGGTGAAGAGCAGATGAAGGCTCTCCTGACAGATGCCATAAAAACTACTGAGGAAGATAGGCACCTTGCAGTCGACGTAGAAACTGCCAAGTGGGAATTGGCTGATTCTGAGAAGGAGTTGCAGTGGTTGAAATCTGCCTTTGCTTCTTCTGAGAAGGAACATACGCACATTCAAAAGGATATTGATGATGTCCAATTGGAATTAGACAATGAAAGAAGCTCGAGGAAGAACCTTGAGGAAGAACTTGGGGAATTGAACAGCGTGGTTGCTGAGATGAGTTCTGAAACCGGAGAGGCTGCAATACAGAAACTCCAAACTGAAATTAAATTCTGCAAGAATATTTTGCAGTGCAGTGTTTGTACTGATAGGCCAAAGGAGGTAAGGAAAATATTTGCCGCCTATTCCGTTGTTGTAATTGTGAAGTGCTATCATCTATTTTGCAATTACTGTGTTCAGAAAAATCTAGAGATCCGTCATCGTAAGTGTCCTGCCTGTGGAACTCCGTTTGGTCAAAATGACATTCGGTTTGTAAAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006513 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010162 GO:0010228 GO:0010390 GO:0010431 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033523 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051276 GO:0061458 GO:0070647 GO:0071695 GO:0071704 GO:0071840 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

904

Amino Acids

103.45

Weight (kDa)

4.98

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4	PF00097	841 - 889	7.3e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55250 AT1G55250 AT1G55250 AT1G55250 AT1G55250
fragaria_vesca	FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811 FvH4_3g44811
malus_domestica	MD08G1205100.v1.1 MD15G1388900.v1.1
prunus_persica	Prupe.1G537100_v2.0.a1
pyrus_communis	pycom08g17730 pycom15g34870
rosa_chinensis	RchiOBHm_Chr5g0081511
rosa_laevigata	RLG00000036943
rosa_multiflora	Rmu_sc0007702.1_g000003
rosa_roxburghii	Rroxscaffold_1G00002040
rosa_rugosa	Rorug05G0476800
rosa_samantha	Rh5AG528300 Rh5BG553000 Rh5CG575900 Rh5DG563100
rosa_wichuraiana	Rw5G049140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2005
Acc36I	ACCTGC	1 cut(s)	2005
AccB1I	GGYRCC	2 cut(s)	1921, 2232
AccB7I	CCANNNNNTGG	1 cut(s)	565
AccBSI	CCGCTC	1 cut(s)	1846
AccI	GTMKAC	3 cut(s)	159, 488, 2244
AciI	CCGC	7 cut(s)	92, 478, 967, 1426, 1766, 1846, 2568
AclWI	GGATC	1 cut(s)	2635
AcsI	RAATTY	7 cut(s)	198, 931, 1000, 1028, 1195, 1817, 2498
AcuI	CTGAAG	5 cut(s)	230, 567, 695, 1256, 1821
AfaI	GTAC	7 cut(s)	304, 1062, 1079, 1332, 1498, 2091, 2533
AfiI	CCNNNNNNNGG	4 cut(s)	67, 565, 1375, 2666
AflII	CTTAAG	1 cut(s)	1565
AflIII	ACRYGT	1 cut(s)	1623
AhdI	GACNNNNNGTC	1 cut(s)	1965
AhlI	ACTAGT	1 cut(s)	805
AjuI	GAANNNNNNNTTGG	2 cut(s)	1103, 1135
AloI	GAACNNNNNNTCC	2 cut(s)	41, 73
Alw21I	GWGCWC	1 cut(s)	868
Alw26I	GTCTC	3 cut(s)	1066, 1566, 1647
Alw44I	GTGCAC	1 cut(s)	864
AlwI	GGATC	1 cut(s)	2635
AlwNI	CAGNNNCTG	2 cut(s)	208, 2005
Ama87I	CYCGRG	1 cut(s)	2392
AoxI	GGCC	4 cut(s)	38, 69, 1377, 2540
ApaLI	GTGCAC	1 cut(s)	864
ApeKI	GCWGC	6 cut(s)	717, 1276, 1754, 1772, 2011, 2468
ApoI	RAATTY	7 cut(s)	198, 931, 1000, 1028, 1195, 1817, 2498
ArsI	GACNNNNNNTTYG	1 cut(s)	2681
AspLEI	GCGC	2 cut(s)	750, 1683
AspS9I	GGNCC	2 cut(s)	70, 1123
AsuHPI	GGTGA	7 cut(s)	662, 770, 876, 1558, 1759, 2029, 2186
AvaI	CYCGRG	1 cut(s)	2392
AvaII	GGWCC	1 cut(s)	1123
BaeGI	GKGCMC	1 cut(s)	868
BanI	GGYRCC	2 cut(s)	1921, 2232
BanII	GRGCYC	2 cut(s)	316, 1168
BarI	GAAGNNNNNNTAC	2 cut(s)	1314, 1346
BauI	CACGAG	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	2072
Bbv12I	GWGCWC	1 cut(s)	868
BbvCI	CCTCAGC	1 cut(s)	713
BbvI	GCAGC	6 cut(s)	729, 1263, 1759, 1766, 2023, 2455
BccI	CCATC	6 cut(s)	332, 376, 563, 619, 1369, 1654
BceAI	ACGGC	1 cut(s)	1909
BclI	TGATCA	1 cut(s)	1093
BcoDI	GTCTC	3 cut(s)	1066, 1566, 1647
BcuI	ACTAGT	1 cut(s)	805
BfaI	CTAG	8 cut(s)	785, 806, 861, 956, 1251, 1265, 1736, 2636
BfmI	CTRYAG	4 cut(s)	378, 1277, 1607, 1955
BfrI	CTTAAG	1 cut(s)	1565
BfuAI	ACCTGC	1 cut(s)	2005
BglII	AGATCT	2 cut(s)	184, 1611
BisI	GCNGC	8 cut(s)	479, 718, 1277, 1755, 1773, 2012, 2469, 2568
BlsI	GCNGC	8 cut(s)	480, 719, 1278, 1756, 1774, 2013, 2470, 2569
Bme18I	GGWCC	1 cut(s)	1123
BmeRI	GACNNNNNGTC	1 cut(s)	1965
BmeT110I	CYCGRG	1 cut(s)	2392
BmgT120I	GGNCC	2 cut(s)	70, 1123
BmiI	GGNNCC	4 cut(s)	313, 877, 1923, 2234
BpiI	GAAGAC	1 cut(s)	2072
BpmI	CTGGAG	2 cut(s)	110, 327
Bpu10I	CCTNAGC	1 cut(s)	713
BpuEI	CTTGAG	2 cut(s)	1680, 2426
Bsa29I	ATCGAT	1 cut(s)	1574
BsaAI	YACGTR	2 cut(s)	650, 1463
BsaJI	CCNNGG	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	2459
BsaXI	ACNNNNNCTCC	4 cut(s)	2279, 2309, 2466, 2496
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 565, 1375, 2666
Bse1I	ACTGG	3 cut(s)	310, 601, 1605
Bse3DI	GCAATG	1 cut(s)	442
BseCI	ATCGAT	1 cut(s)	1574
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	4 cut(s)	67, 565, 1375, 2666
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	9 cut(s)	727, 966, 1430, 1857, 2013, 2211, 2271, 2313, 2433
BseNI	ACTGG	3 cut(s)	310, 601, 1605
BseRI	GAGGAG	2 cut(s)	70, 324
BseSI	GKGCMC	1 cut(s)	868
BseXI	GCAGC	6 cut(s)	729, 1263, 1759, 1766, 2023, 2455
BsgI	GTGCAG	2 cut(s)	866, 2542
BshFI	GGCC	4 cut(s)	40, 71, 1379, 2542
BshNI	GGYRCC	2 cut(s)	1921, 2232
BshVI	ATCGAT	1 cut(s)	1574
BsiHKAI	GWGCWC	1 cut(s)	868
BsiHKCI	CYCGRG	1 cut(s)	2392
BsiSI	CCGG	1 cut(s)	2460
BslFI	GGGAC	1 cut(s)	919
BslI	CCNNNNNNNGG	4 cut(s)	67, 565, 1375, 2666
BsmAI	GTCTC	3 cut(s)	1066, 1566, 1647
BsmFI	GGGAC	1 cut(s)	919
BsmI	GAATGC	2 cut(s)	1117, 1720
BsnI	GGCC	4 cut(s)	40, 71, 1379, 2542
BsoBI	CYCGRG	1 cut(s)	2392
Bsp1286I	GDGCHC	3 cut(s)	316, 868, 1168
Bsp1407I	TGTACA	3 cut(s)	1060, 1077, 1330
Bsp143I	GATC	6 cut(s)	184, 280, 730, 1093, 1611, 2640
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	7 cut(s)	92, 478, 967, 1426, 1766, 1846, 2568
BspANI	GGCC	4 cut(s)	40, 71, 1379, 2542
BspCNI	CTCAG	9 cut(s)	726, 967, 1429, 1858, 2014, 2212, 2272, 2314, 2434
BspDI	ATCGAT	1 cut(s)	1574
BspHI	TCATGA	1 cut(s)	1444
BspLI	GGNNCC	4 cut(s)	313, 877, 1923, 2234
BspMAI	CTGCAG	4 cut(s)	382, 1281, 1611, 1959
BspMI	ACCTGC	1 cut(s)	2005
BspPI	GGATC	1 cut(s)	2635
BspQI	GCTCTTC	1 cut(s)	2172
BspT107I	GGYRCC	2 cut(s)	1921, 2232
BspTI	CTTAAG	1 cut(s)	1565
BsrBI	CCGCTC	1 cut(s)	1846
BsrDI	GCAATG	1 cut(s)	442
BsrGI	TGTACA	3 cut(s)	1060, 1077, 1330
BsrI	ACTGG	3 cut(s)	310, 601, 1605
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	6 cut(s)	184, 280, 730, 1093, 1611, 2640
BssSI	CACGAG	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	250, 1077, 2621
Bst6I	CTCTTC	4 cut(s)	29, 378, 788, 2172
BstAFI	CTTAAG	1 cut(s)	1565
BstAPI	GCANNNNNTGC	1 cut(s)	2008
BstAUI	TGTACA	3 cut(s)	1060, 1077, 1330
BstBAI	YACGTR	2 cut(s)	650, 1463
BstC8I	GCNNGC	5 cut(s)	694, 917, 1155, 2076, 2106
BstDSI	CCRYGG	1 cut(s)	66
BstHHI	GCGC	2 cut(s)	750, 1683
BstKTI	GATC	6 cut(s)	187, 283, 733, 1096, 1614, 2643
BstMAI	GTCTC	3 cut(s)	1066, 1566, 1647
BstMBI	GATC	6 cut(s)	184, 280, 730, 1093, 1611, 2640
BstMWI	GCNNNNNNNGC	8 cut(s)	178, 320, 1163, 1276, 1763, 1772, 1802, 2008
BstNSI	RCATGY	1 cut(s)	1627
BstSFI	CTRYAG	4 cut(s)	378, 1277, 1607, 1955
BstSLI	GKGCMC	1 cut(s)	868
BstV1I	GCAGC	6 cut(s)	729, 1263, 1759, 1766, 2023, 2455
BstV2I	GAAGAC	1 cut(s)	2072
BstX2I	RGATCY	3 cut(s)	184, 1611, 2640
BstYI	RGATCY	3 cut(s)	184, 1611, 2640
Bsu15I	ATCGAT	1 cut(s)	1574
BsuRI	GGCC	4 cut(s)	40, 71, 1379, 2542
BsuTUI	ATCGAT	1 cut(s)	1574
BtgI	CCRYGG	1 cut(s)	66
BtsI	GCAGTG	3 cut(s)	2300, 2525, 2530
BtsIMutI	CAGTG	5 cut(s)	255, 1828, 2300, 2525, 2530
BveI	ACCTGC	1 cut(s)	2005
Cac8I	GCNNGC	5 cut(s)	694, 917, 1155, 2076, 2106
CaiI	CAGNNNCTG	2 cut(s)	208, 2005
CciI	TCATGA	1 cut(s)	1444
CfoI	GCGC	2 cut(s)	750, 1683
Cfr13I	GGNCC	2 cut(s)	70, 1123
ClaI	ATCGAT	1 cut(s)	1574
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	7 cut(s)	303, 1061, 1078, 1331, 1497, 2090, 2532
CviAII	CATG	7 cut(s)	67, 372, 992, 1318, 1445, 1624, 2158
CviQI	GTAC	7 cut(s)	303, 1061, 1078, 1331, 1497, 2090, 2532
DpnI	GATC	6 cut(s)	186, 282, 732, 1095, 1613, 2642
DpnII	GATC	6 cut(s)	184, 280, 730, 1093, 1611, 2640
DriI	GACNNNNNGTC	1 cut(s)	1965
Eam1104I	CTCTTC	4 cut(s)	29, 378, 788, 2172
Eam1105I	GACNNNNNGTC	1 cut(s)	1965
EarI	CTCTTC	4 cut(s)	29, 378, 788, 2172
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	40
Eco24I	GRGCYC	2 cut(s)	316, 1168
Eco32I	GATATC	1 cut(s)	579
Eco47I	GGWCC	1 cut(s)	1123
Eco57I	CTGAAG	5 cut(s)	230, 567, 695, 1256, 1821
Eco88I	CYCGRG	1 cut(s)	2392
EcoRI	GAATTC	1 cut(s)	1817
EcoRV	GATATC	1 cut(s)	579
EcoT14I	CCWWGG	1 cut(s)	66
EcoT22I	ATGCAT	3 cut(s)	118, 1720, 1840
EcoT38I	GRGCYC	2 cut(s)	316, 1168
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	7 cut(s)	70, 375, 995, 1321, 1448, 1627, 2161
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FaqI	GGGAC	1 cut(s)	919
FatI	CATG	7 cut(s)	66, 371, 991, 1317, 1444, 1623, 2157
FauI	CCCGC	1 cut(s)	1839
FauNDI	CATATG	1 cut(s)	1975
FbaI	TGATCA	1 cut(s)	1093
FblI	GTMKAC	3 cut(s)	159, 488, 2244
Fnu4HI	GCNGC	8 cut(s)	479, 718, 1277, 1755, 1773, 2012, 2469, 2568
FriOI	GRGCYC	2 cut(s)	316, 1168
Fsp4HI	GCNGC	8 cut(s)	479, 718, 1277, 1755, 1773, 2012, 2469, 2568
FspBI	CTAG	8 cut(s)	785, 806, 861, 956, 1251, 1265, 1736, 2636
GlaI	GCGC	2 cut(s)	749, 1682
GluI	GCNGC	8 cut(s)	479, 718, 1277, 1755, 1773, 2012, 2469, 2568
GsuI	CTGGAG	2 cut(s)	110, 327
HaeIII	GGCC	4 cut(s)	40, 71, 1379, 2542
HapII	CCGG	1 cut(s)	2460
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	2 cut(s)	750, 1683
Hin1II	CATG	7 cut(s)	70, 375, 995, 1321, 1448, 1627, 2161
Hin6I	GCGC	2 cut(s)	748, 1681
HinP1I	GCGC	2 cut(s)	748, 1681
HincII	GTYRAC	1 cut(s)	2245
HindII	GTYRAC	1 cut(s)	2245
HindIII	AAGCTT	2 cut(s)	170, 1485
HpaII	CCGG	1 cut(s)	2460
HphI	GGTGA	7 cut(s)	662, 770, 876, 1558, 1759, 2029, 2186
Hpy166II	GTNNAC	7 cut(s)	160, 489, 866, 1080, 1528, 2134, 2245
Hpy8I	GTNNAC	7 cut(s)	160, 489, 866, 1080, 1528, 2134, 2245
Hpy99I	CGWCG	2 cut(s)	113, 2249
HpyAV	CCTTC	8 cut(s)	205, 792, 896, 1173, 1426, 2182, 2278, 2320
HpyCH4III	ACNGT	3 cut(s)	250, 1077, 2621
HpyCH4IV	ACGT	4 cut(s)	485, 649, 1462, 2247
HpyF10VI	GCNNNNNNNGC	8 cut(s)	178, 320, 1163, 1276, 1763, 1772, 1802, 2008
HpySE526I	ACGT	4 cut(s)	485, 649, 1462, 2247
Hsp92II	CATG	7 cut(s)	70, 375, 995, 1321, 1448, 1627, 2161
HspAI	GCGC	2 cut(s)	748, 1681
Ksp22I	TGATCA	1 cut(s)	1093
Kzo9I	GATC	6 cut(s)	184, 280, 730, 1093, 1611, 2640
LguI	GCTCTTC	1 cut(s)	2172
LmnI	GCTCC	3 cut(s)	83, 311, 1858
Lsp1109I	GCAGC	6 cut(s)	729, 1263, 1759, 1766, 2023, 2455
MaeI	CTAG	8 cut(s)	785, 806, 861, 956, 1251, 1265, 1736, 2636
MaeII	ACGT	4 cut(s)	485, 649, 1462, 2247
MaeIII	GTNAC	3 cut(s)	882, 1463, 2017
MalI	GATC	6 cut(s)	186, 282, 732, 1095, 1613, 2642
MbiI	CCGCTC	1 cut(s)	1846
MboI	GATC	6 cut(s)	184, 280, 730, 1093, 1611, 2640
MfeI	CAATTG	2 cut(s)	1019, 2366
MflI	RGATCY	3 cut(s)	184, 1611, 2640
MhlI	GDGCHC	3 cut(s)	316, 868, 1168
MlyI	GAGTC	3 cut(s)	8, 396, 1217
MmeI	TCCRAC	1 cut(s)	1126
Mph1103I	ATGCAT	3 cut(s)	118, 1720, 1840
MslI	CAYNNNNRTG	1 cut(s)	1110
MspA1I	CMGCKG	2 cut(s)	154, 1276
MspCI	CTTAAG	1 cut(s)	1565
MspI	CCGG	1 cut(s)	2460
MunI	CAATTG	2 cut(s)	1019, 2366
Mva1269I	GAATGC	2 cut(s)	1117, 1720
MwoI	GCNNNNNNNGC	8 cut(s)	178, 320, 1163, 1276, 1763, 1772, 1802, 2008
NcoI	CCATGG	1 cut(s)	66
NdeI	CATATG	1 cut(s)	1975
NdeII	GATC	6 cut(s)	184, 280, 730, 1093, 1611, 2640
NlaIII	CATG	7 cut(s)	70, 375, 995, 1321, 1448, 1627, 2161
NlaIV	GGNNCC	4 cut(s)	313, 877, 1923, 2234
NmuCI	GTSAC	3 cut(s)	882, 1463, 2017
NsiI	ATGCAT	3 cut(s)	118, 1720, 1840
NspI	RCATGY	1 cut(s)	1627
PaeR7I	CTCGAG	1 cut(s)	2392
PagI	TCATGA	1 cut(s)	1444
PaqCI	CACCTGC	1 cut(s)	2005
PceI	AGGCCT	1 cut(s)	40
PciI	ACATGT	1 cut(s)	1623
PciSI	GCTCTTC	1 cut(s)	2172
PctI	GAATGC	2 cut(s)	1117, 1720
PfeI	GAWTC	9 cut(s)	265, 416, 811, 1145, 1247, 1337, 1673, 2147, 2276
PflMI	CCANNNNNTGG	1 cut(s)	565
PkrI	GCNGC	8 cut(s)	480, 719, 1278, 1756, 1774, 2013, 2470, 2569
PleI	GAGTC	3 cut(s)	8, 396, 1216
PpsI	GAGTC	3 cut(s)	8, 396, 1216
Ppu21I	YACGTR	2 cut(s)	650, 1463
PscI	ACATGT	1 cut(s)	1623
PspN4I	GGNNCC	4 cut(s)	313, 877, 1923, 2234
PspPI	GGNCC	2 cut(s)	70, 1123
PspXI	VCTCGAGB	1 cut(s)	2392
PstI	CTGCAG	4 cut(s)	382, 1281, 1611, 1959
PstNI	CAGNNNCTG	2 cut(s)	208, 2005
PsuI	RGATCY	3 cut(s)	184, 1611, 2640
PvuII	CAGCTG	2 cut(s)	154, 1276
RsaI	GTAC	7 cut(s)	304, 1062, 1079, 1332, 1498, 2091, 2533
RsaNI	GTAC	7 cut(s)	303, 1061, 1078, 1331, 1497, 2090, 2532
RseI	CAYNNNNRTG	1 cut(s)	1110
SalI	GTCGAC	1 cut(s)	2243
SapI	GCTCTTC	1 cut(s)	2172
SatI	GCNGC	8 cut(s)	479, 718, 1277, 1755, 1773, 2012, 2469, 2568
Sau3AI	GATC	6 cut(s)	184, 280, 730, 1093, 1611, 2640
Sau96I	GGNCC	2 cut(s)	70, 1123
SchI	GAGTC	3 cut(s)	8, 396, 1217
SduI	GDGCHC	3 cut(s)	316, 868, 1168
SfcI	CTRYAG	4 cut(s)	378, 1277, 1607, 1955
Sfr274I	CTCGAG	1 cut(s)	2392
SinI	GGWCC	1 cut(s)	1123
SlaI	CTCGAG	1 cut(s)	2392
SmiMI	CAYNNNNRTG	1 cut(s)	1110
SmlI	CTYRAG	4 cut(s)	1565, 1695, 2392, 2405
SmoI	CTYRAG	4 cut(s)	1565, 1695, 2392, 2405
SpeI	ACTAGT	1 cut(s)	805
SseBI	AGGCCT	1 cut(s)	40
SsiI	CCGC	7 cut(s)	92, 478, 967, 1426, 1766, 1846, 2568
SspI	AATATT	2 cut(s)	2512, 2562
SspMI	CTAG	8 cut(s)	785, 806, 861, 956, 1251, 1265, 1736, 2636
StuI	AGGCCT	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	3 cut(s)	250, 1077, 2621
TaiI	ACGT	4 cut(s)	488, 652, 1465, 2250
TaqI	TCGA	6 cut(s)	111, 939, 1070, 1574, 2244, 2393
TatI	WGTACW	7 cut(s)	302, 1060, 1077, 1330, 1496, 2089, 2531
TauI	GCSGC	2 cut(s)	481, 2570
TfiI	GAWTC	9 cut(s)	265, 416, 811, 1145, 1247, 1337, 1673, 2147, 2276
TscAI	CASTG	5 cut(s)	255, 1828, 2300, 2525, 2530
TseFI	GTSAC	3 cut(s)	882, 1463, 2017
TseI	GCWGC	6 cut(s)	717, 1276, 1754, 1772, 2011, 2468
Tsp45I	GTSAC	3 cut(s)	882, 1463, 2017
TspGWI	ACGGA	4 cut(s)	1358, 2566, 2633, 2664
TspRI	CASTG	5 cut(s)	255, 1828, 2300, 2525, 2530
Van91I	CCANNNNNTGG	1 cut(s)	565
Vha464I	CTTAAG	1 cut(s)	1565
VneI	GTGCAC	1 cut(s)	864
VpaK11BI	GGWCC	1 cut(s)	1123
XapI	RAATTY	7 cut(s)	198, 931, 1000, 1028, 1195, 1817, 2498
XbaI	TCTAGA	2 cut(s)	1735, 2635
XceI	RCATGY	1 cut(s)	1627
XcmI	CCANNNNNNNNNTGG	2 cut(s)	566, 2266
XhoI	CTCGAG	1 cut(s)	2392
XmiI	GTMKAC	3 cut(s)	159, 488, 2244
XspI	CTAG	8 cut(s)	785, 806, 861, 956, 1251, 1265, 1736, 2636
Zsp2I	ATGCAT	3 cut(s)	118, 1720, 1840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.