Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009920

Physical Location & Seq

Genomic Coordinates Reverse (-)

35312242 .. 35313587

Gene Structure 1346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGACGGCGGAGATTTTGAGGAAGAGCGGCGTGATGTATAGGCATTTGGTGTGCGGCAACAATTCGACTAGGGCCAAGGACCGGGGTGTTTATCAGAGAAACACTGCTTTGGAGCACATTGAGCGGCATAGGCTTGATGGCATTGTTTACTTTGCAGACGATGATAATATATACTCCCTCGACTTGTTTGATCGCTTGAGAGACATTAGCCGATTTGGAACTTGGCCTGTTGCTATGTTAGCTCAAAGCAAAAACAAGGCGATATTGGAAGGTCCAGTATGCAATCGGAGCCAAGTGGTCGGATGGCACACAAATGAGAAAAGCAAAAGACTTCGTAGGTTTCATGTTGATATGTCAGGGTTTGCATTTAATAGCACAATATTATGGGATCCAAAGAGATGGCACCGCCCCACTTCTGCTCCAATTCGACAATTAGATACAGTGAAGGAGGGTTTCCAAGAGACCACTTTTATAGAACAAGTTGTGGAAGATGAGAGTCAAATGGAAGGTACCCCAGCCGGCTGTTCAAAAGTAATGAACTGGCATCTTCATTTGGAAGCTCATAGTCTTGTTTATCCCAAAGGCTGGCAACTTGCGAAGAACCTTGATGTTGTTCTCCCCATTGAACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009832 GO:0009834 GO:0009987 GO:0010208 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0022607 GO:0030198 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0085029 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

212

Amino Acids

24.46

Weight (kDa)

8.43

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_43	PF03360	3 - 187	5.4e-67	Glycosyltransferase family 43

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27600 AT1G27600
fragaria_vesca	FvH4_5g33700 FvH4_5g33700 FvH4_5g33700 FvH4_5g33700
malus_domestica	MD08G1209500.v1.1 MD15G1393400.v1.1
prunus_persica	Prupe.1G541800_v2.0.a1
pyrus_communis	pycom08g18080 pycom15g35370
rosa_chinensis	RchiOBHm_Chr7g0232711
rosa_laevigata	RLG00000001315
rosa_multiflora	Rmu_sc0002147.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227960
rosa_rugosa	Rorug07G0276000
rosa_samantha	Rh7AG430700 Rh7BG403800 Rh7CG449400 Rh7DG420300
rosa_wichuraiana	Rw7G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	512
AccB1I	GGYRCC	2 cut(s)	405, 512
AccB7I	CCANNNNNTGG	1 cut(s)	588
AccBSI	CCGCTC	2 cut(s)	30, 127
AciI	CCGC	5 cut(s)	11, 30, 57, 127, 409
AclWI	GGATC	2 cut(s)	386, 399
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	2 cut(s)	84, 588
AgsI	TTSAA	2 cut(s)	531, 629
AluBI	AGCT	2 cut(s)	245, 563
AluI	AGCT	2 cut(s)	245, 563
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	2 cut(s)	198, 458
AlwI	GGATC	2 cut(s)	386, 399
AoxI	GGCC	2 cut(s)	75, 227
Asp718I	GGTACC	1 cut(s)	512
AspS9I	GGNCC	3 cut(s)	75, 82, 275
AsuC2I	CCSGG	1 cut(s)	86
AvaII	GGWCC	2 cut(s)	82, 275
BamHI	GGATCC	1 cut(s)	391
BanI	GGYRCC	2 cut(s)	405, 512
Bbv12I	GWGCWC	1 cut(s)	120
BccI	CCATC	3 cut(s)	134, 300, 396
BceAI	ACGGC	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	2 cut(s)	198, 458
BfaI	CTAG	1 cut(s)	72
BisI	GCNGC	3 cut(s)	31, 58, 128
BlsI	GCNGC	3 cut(s)	32, 59, 129
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	2 cut(s)	82, 275
BmgT120I	GGNCC	3 cut(s)	75, 82, 275
BmiI	GGNNCC	4 cut(s)	293, 393, 407, 514
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	556
BpuEI	CTTGAG	1 cut(s)	220
BpuMI	CCSGG	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	2 cut(s)	78, 85
BsaXI	ACNNNNNCTCC	2 cut(s)	406, 436
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 588
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	2 cut(s)	278, 548
BseDI	CCNNGG	2 cut(s)	78, 85
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	2 cut(s)	84, 588
BseNI	ACTGG	2 cut(s)	278, 548
BseYI	CCCAGC	1 cut(s)	517
BshFI	GGCC	2 cut(s)	77, 229
BshNI	GGYRCC	2 cut(s)	405, 512
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	85, 522
BslI	CCNNNNNNNGG	2 cut(s)	84, 588
BsmAI	GTCTC	2 cut(s)	198, 458
BsnI	GGCC	2 cut(s)	77, 229
Bso31I	GGTCTC	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	193, 391
BspACI	CCGC	5 cut(s)	11, 30, 57, 127, 409
BspANI	GGCC	2 cut(s)	77, 229
BspLI	GGNNCC	4 cut(s)	293, 393, 407, 514
BspPI	GGATC	2 cut(s)	386, 399
BspQI	GCTCTTC	1 cut(s)	20
BspT107I	GGYRCC	2 cut(s)	405, 512
BspTNI	GGTCTC	1 cut(s)	458
BsrBI	CCGCTC	2 cut(s)	30, 127
BsrFI	RCCGGY	1 cut(s)	521
BsrI	ACTGG	2 cut(s)	278, 548
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	2 cut(s)	78, 85
BssMI	GATC	2 cut(s)	193, 391
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	523, 590
BstF5I	GGATG	1 cut(s)	311
BstKTI	GATC	2 cut(s)	196, 394
BstMAI	GTCTC	2 cut(s)	198, 458
BstMBI	GATC	2 cut(s)	193, 391
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 133, 242, 291
BstSCI	CCNGG	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	391
BstXI	CCANNNNNNTGG	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	77, 229
BtsCI	GGATG	1 cut(s)	311
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 450
Cac8I	GCNNGC	2 cut(s)	523, 590
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	3 cut(s)	75, 82, 275
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	1 cut(s)	347
CviQI	GTAC	1 cut(s)	513
DpnI	GATC	2 cut(s)	195, 393
DpnII	GATC	2 cut(s)	193, 391
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	2 cut(s)	82, 275
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	350
FatI	CATG	1 cut(s)	346
Fnu4HI	GCNGC	3 cut(s)	31, 58, 128
FokI	GGATG	1 cut(s)	318
Fsp4HI	GCNGC	3 cut(s)	31, 58, 128
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	3 cut(s)	31, 58, 128
GsaI	CCCAGC	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	77, 229
HapII	CCGG	2 cut(s)	85, 522
Hin1II	CATG	1 cut(s)	350
HinfI	GANTC	1 cut(s)	499
HpaII	CCGG	2 cut(s)	85, 522
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	3 cut(s)	99, 291, 305
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	3 cut(s)	266, 442, 503
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4V	TGCA	3 cut(s)	158, 285, 368
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 133, 242, 291
Hsp92II	CATG	1 cut(s)	350
KpnI	GGTACC	1 cut(s)	516
KroI	GCCGGC	1 cut(s)	521
KroNI	GCCGGC	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	193, 391
LguI	GCTCTTC	1 cut(s)	20
LmnI	GCTCC	3 cut(s)	115, 291, 427
LpnPI	CCDG	8 cut(s)	98, 243, 291, 345, 529, 531, 535, 574
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	1 cut(s)	72
MalI	GATC	2 cut(s)	195, 393
MbiI	CCGCTC	2 cut(s)	30, 127
MboI	GATC	2 cut(s)	193, 391
MboII	GAAGA	4 cut(s)	37, 503, 542, 613
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	3 cut(s)	64, 426, 434
MlyI	GAGTC	1 cut(s)	508
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	3 cut(s)	15, 191, 445
MroNI	GCCGGC	1 cut(s)	521
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	315
MspI	CCGG	2 cut(s)	85, 522
MspR9I	CCNGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	4 cut(s)	124, 133, 242, 291
NaeI	GCCGGC	1 cut(s)	523
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	2 cut(s)	193, 391
NgoMIV	GCCGGC	1 cut(s)	521
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	4 cut(s)	293, 393, 407, 514
PciSI	GCTCTTC	1 cut(s)	20
PdiI	GCCGGC	1 cut(s)	523
PflMI	CCANNNNNTGG	1 cut(s)	588
PkrI	GCNGC	3 cut(s)	32, 59, 129
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
PspFI	CCCAGC	1 cut(s)	517
PspN4I	GGNNCC	4 cut(s)	293, 393, 407, 514
PspPI	GGNCC	3 cut(s)	75, 82, 275
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
RseI	CAYNNNNRTG	1 cut(s)	315
SapI	GCTCTTC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	3 cut(s)	31, 58, 128
Sau3AI	GATC	2 cut(s)	193, 391
Sau96I	GGNCC	3 cut(s)	75, 82, 275
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	6 cut(s)	247, 277, 344, 514, 565, 609
SfaNI	GCATC	1 cut(s)	556
SinI	GGWCC	2 cut(s)	82, 275
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	3 cut(s)	64, 426, 434
SsiI	CCGC	5 cut(s)	11, 30, 57, 127, 409
SspI	AATATT	1 cut(s)	384
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	445
TaqI	TCGA	3 cut(s)	68, 183, 430
TasI	AATT	3 cut(s)	64, 426, 434
TauI	GCSGC	3 cut(s)	33, 60, 130
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	2 cut(s)	112, 450
TspDTI	ATGAA	3 cut(s)	335, 542, 554
TspRI	CASTG	2 cut(s)	112, 450
Van91I	CCANNNNNTGG	1 cut(s)	588
VpaK11BI	GGWCC	2 cut(s)	82, 275
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.