pycom15g37350

Cysteine desulfurase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0006305
Physical Location & Seq
Reverse (-)
37322612 .. 37324806
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 474 bp
ATGTATTTTATCGATCATTCCACTTACCAAGAACCTCCATCTAGATTTGAGGCTGGAACACCAGCAATCGGGGAAGCAATTGGGTTAGGAGCTGCTATTGATTATTTGTCAGGACTTGGTATGCAAAGGATACATGATTATGAGATGTTTCTTGGTAAATATCTATACGAGAGCCTTCAATCTGTCCCCAATATTCGCATTTATGGTCCAGCCCCTTCAGAACACATCTTCCGGGCTGCCCTATGTTCTTTCAACGTTGAGAATATACACCCTACAGATCTGGCAACTTTTCTTGACCAACAGCACGGAGTGGCTATCCGATCAGGTCACCATTGCGCCCAACCCCTTCATCGGCAGTTAGGAGTCAGCGCGAGTGCACGTGCAAGTCTTCACTTGTACAACACCGTAGAAGATGTCGATGACTTGATCCGGGCACTCAACGACACGGTCAGCTTCTTCAATTCTTTTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00450 ko01100 map00450 map01100
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

158

Amino Acids

17.48

Weight (kDa)

5.62

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 4 - 142 5.9e-44 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 371
AclI AACGTT 1 cut(s) 255
AclWI GGATC 1 cut(s) 421
AcuI CTGAAG 1 cut(s) 201
AcvI CACGTG 1 cut(s) 380
AdeI CACNNNGTG 1 cut(s) 310
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 2 cut(s) 68, 351
AgsI TTSAA 3 cut(s) 179, 253, 460
AloI GAACNNNNNNTCC 2 cut(s) 213, 245
AluBI AGCT 2 cut(s) 92, 453
AluI AGCT 2 cut(s) 92, 453
Alw21I GWGCWC 1 cut(s) 379
Alw44I GTGCAC 1 cut(s) 375
AlwI GGATC 1 cut(s) 421
ApaLI GTGCAC 1 cut(s) 375
ApeKI GCWGC 2 cut(s) 92, 236
AspLEI GCGC 2 cut(s) 338, 371
AspS9I GGNCC 1 cut(s) 206
AsuC2I CCSGG 2 cut(s) 233, 431
AsuHPI GGTGA 1 cut(s) 320
AvaII GGWCC 1 cut(s) 206
BaeGI GKGCMC 2 cut(s) 379, 436
BbrPI CACGTG 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 2 cut(s) 79, 223
BccI CCATC 1 cut(s) 46
BciVI GTATCC 1 cut(s) 123
BcnI CCSGG 2 cut(s) 233, 431
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 273
BfuI GTATCC 1 cut(s) 123
BglII AGATCT 1 cut(s) 277
BisI GCNGC 2 cut(s) 93, 237
BlsI GCNGC 2 cut(s) 94, 238
Bme1390I CCNGG 2 cut(s) 233, 431
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmrFI CCNGG 2 cut(s) 233, 431
BpiI GAAGAC 1 cut(s) 380
BpuMI CCSGG 2 cut(s) 233, 431
Bsa29I ATCGAT 1 cut(s) 12
BsaAI YACGTR 1 cut(s) 380
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 351
Bse3DI GCAATG 1 cut(s) 331
BseCI ATCGAT 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 68, 351
BseMI GCAATG 1 cut(s) 331
BseSI GKGCMC 2 cut(s) 379, 436
BseXI GCAGC 2 cut(s) 79, 223
Bsh1236I CGCG 1 cut(s) 371
BshVI ATCGAT 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 379
BsiSI CCGG 2 cut(s) 232, 430
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 68, 351
BsmFI GGGAC 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 379, 436
Bsp1407I TGTACA 1 cut(s) 396
Bsp143I GATC 4 cut(s) 13, 277, 320, 426
BspDI ATCGAT 1 cut(s) 12
BspFNI CGCG 1 cut(s) 371
BspPI GGATC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 331
BsrGI TGTACA 1 cut(s) 396
BssMI GATC 4 cut(s) 13, 277, 320, 426
Bst4CI ACNGT 2 cut(s) 406, 448
BstAUI TGTACA 1 cut(s) 396
BstBAI YACGTR 1 cut(s) 380
BstEII GGTNACC 1 cut(s) 326
BstFNI CGCG 1 cut(s) 371
BstHHI GCGC 2 cut(s) 338, 371
BstKTI GATC 4 cut(s) 16, 280, 323, 429
BstMBI GATC 4 cut(s) 13, 277, 320, 426
BstPI GGTNACC 1 cut(s) 326
BstSCI CCNGG 2 cut(s) 231, 429
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 2 cut(s) 379, 436
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 2 cut(s) 79, 223
BstV2I GAAGAC 1 cut(s) 380
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
Bsu15I ATCGAT 1 cut(s) 12
BsuI GTATCC 1 cut(s) 123
BsuTUI ATCGAT 1 cut(s) 12
CfoI GCGC 2 cut(s) 338, 371
Cfr13I GGNCC 1 cut(s) 206
ClaI ATCGAT 1 cut(s) 12
Csp6I GTAC 1 cut(s) 397
CviAII CATG 1 cut(s) 134
CviJI RGCY 7 cut(s) 53, 92, 174, 212, 236, 314, 453
CviKI_1 RGCY 7 cut(s) 53, 92, 174, 212, 236, 314, 453
CviQI GTAC 1 cut(s) 397
DpnI GATC 4 cut(s) 15, 279, 322, 428
DpnII GATC 4 cut(s) 13, 277, 320, 426
DraIII CACNNNGTG 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 201
Eco72I CACGTG 1 cut(s) 380
Eco91I GGTNACC 1 cut(s) 326
EcoO65I GGTNACC 1 cut(s) 326
FaeI CATG 1 cut(s) 137
FaiI YATR 7 cut(s) 122, 135, 141, 166, 204, 244, 266
FaqI GGGAC 1 cut(s) 170
FatI CATG 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 93, 237
Fsp4HI GCNGC 2 cut(s) 93, 237
FspBI CTAG 1 cut(s) 42
GlaI GCGC 2 cut(s) 337, 370
GluI GCNGC 2 cut(s) 93, 237
HapII CCGG 2 cut(s) 232, 430
HhaI GCGC 2 cut(s) 338, 371
Hin1II CATG 1 cut(s) 137
Hin6I GCGC 2 cut(s) 336, 369
HinP1I GCGC 2 cut(s) 336, 369
HinfI GANTC 1 cut(s) 363
HpaII CCGG 2 cut(s) 232, 430
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 2 cut(s) 220, 320
Hpy188III TCNNGA 3 cut(s) 42, 111, 293
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 3 cut(s) 185, 225, 356
HpyCH4III ACNGT 2 cut(s) 406, 448
HpyCH4IV ACGT 2 cut(s) 255, 379
HpyCH4V TGCA 3 cut(s) 124, 377, 383
HpySE526I ACGT 2 cut(s) 255, 379
Hsp92II CATG 1 cut(s) 137
HspAI GCGC 2 cut(s) 336, 369
Kzo9I GATC 4 cut(s) 13, 277, 320, 426
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 8 cut(s) 39, 75, 96, 222, 245, 266, 309, 443
Lsp1109I GCAGC 2 cut(s) 79, 223
MaeI CTAG 1 cut(s) 42
MaeII ACGT 2 cut(s) 255, 379
MaeIII GTNAC 1 cut(s) 326
MalI GATC 4 cut(s) 15, 279, 322, 428
MboI GATC 4 cut(s) 13, 277, 320, 426
MboII GAAGA 4 cut(s) 220, 380, 422, 448
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 2 cut(s) 379, 436
MluCI AATT 2 cut(s) 78, 460
MlyI GAGTC 1 cut(s) 372
MnlI CCTC 2 cut(s) 43, 45
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 2 cut(s) 232, 430
MspR9I CCNGG 2 cut(s) 233, 431
MunI CAATTG 1 cut(s) 78
MvnI CGCG 1 cut(s) 371
NciI CCSGG 2 cut(s) 233, 431
NdeII GATC 4 cut(s) 13, 277, 320, 426
NlaIII CATG 1 cut(s) 137
NmuCI GTSAC 1 cut(s) 326
PflFI GACNNNGTC 1 cut(s) 446
PkrI GCNGC 2 cut(s) 94, 238
PleI GAGTC 1 cut(s) 371
PmaCI CACGTG 1 cut(s) 380
PmlI CACGTG 1 cut(s) 380
PpsI GAGTC 1 cut(s) 371
Ppu21I YACGTR 1 cut(s) 380
Psp1406I AACGTT 1 cut(s) 255
PspCI CACGTG 1 cut(s) 380
PspEI GGTNACC 1 cut(s) 326
PspPI GGNCC 1 cut(s) 206
PsuI RGATCY 1 cut(s) 277
PsyI GACNNNGTC 1 cut(s) 446
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 2 cut(s) 93, 237
Sau3AI GATC 4 cut(s) 13, 277, 320, 426
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 1 cut(s) 372
ScrFI CCNGG 2 cut(s) 233, 431
SduI GDGCHC 2 cut(s) 379, 436
SetI ASST 6 cut(s) 37, 94, 258, 328, 382, 455
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 2 cut(s) 78, 460
SspI AATATT 1 cut(s) 193
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 2 cut(s) 231, 429
TaaI ACNGT 2 cut(s) 406, 448
TaiI ACGT 2 cut(s) 258, 382
TaqI TCGA 2 cut(s) 12, 417
TasI AATT 2 cut(s) 78, 460
TatI WGTACW 1 cut(s) 396
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 2 cut(s) 92, 236
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 338
TspGWI ACGGA 1 cut(s) 321
Tth111I GACNNNGTC 1 cut(s) 446
VneI GTGCAC 1 cut(s) 375
VpaK11BI GGWCC 1 cut(s) 206
XbaI TCTAGA 1 cut(s) 41
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.