pycom15g37460

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010481
Physical Location & Seq
Forward (+)
37412447 .. 37414760
2314 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1359 bp
ATGGTTTGTTGTGAAGCGCCAGAGACGTTGAGAGAGAGCAAGCGGAAATTGGCAAACGCTCTCAGATCCGTTGCAAATTTCAATTCAAATTTCCATCTAATGGACCCTCTGCCTGATGCTGTTGTTCAATACATATTGTCGTACATGGAAAACGCCAAAGACGTTGCAATTTGTAATTGTGTATCCAAGCGATGGAAGGACTCAATGCCTTATATAAGGAGCCTTTACTTCCCCAGAAGCTCCTTTGATAGCCATACGGGTGGAGACAGTCCTGATGACATTGTATTGAAGATGGTTTCAATGATTGAACGATTAGAAAATCTTGTTGTTTATAGTCCCTTCTCGGGTGCTGGCCTTGCTTCTTGGTTATTGATCATAGGTCCCTCTCTTAAGTATCTGGAGCTTCGAATGGACAATATTGCTGAATATCAGACCTCTCTTGAAAGCCCTTCAAAACTGGACTACTTAAGTGCTGCAGAAAATTTGGAGTCTTTAAAACTTTGGGGAGTTTTAGTGGCCCGTTCCCCAAAGTGGGGTGTCTTCCAGAAACTCAAGAACCTTGAAATTGTTGGAGCGAAACTGGAGGATCCTGCATTGTCAACTGTGCTTCAGGCCTGTCCGAATCTCACCAATTTGGTGTTACTTGGTTGTGAAGGATTGAGATCGGTTTCAATTGAGTTGCCATATTTGGAGCAGTGTAAGCTGGACTTTTATGGCTTGGACAACTGCTCATTTTCCATGGGGTGCCCAAAAATTAAATTCCTTGAGGTGCAAGGCTGTAGCTGGATTCGGGTTCGTGATACAAAGCATTTGAAAAATCTTTCTATTGCCAATAATGCAGGGAAAGTCTACATGGTTGATTTTGAGAAACTTGTCGCTCTAGAGTTCTTATCAATTAGGGGAGTCCAGTGGTGTTGGGATGCAATAAGAAATATGCTTCAATGTGCAAGTGAAGTGAAACACCTTTTCATGAAGGTGGAATTCACAGGGGATTCTGAGATCCTTCAACCCTTTCCAGAGGTTGACTTTGTTGATTTCTTCAATAACCATCCCAAGCTGCAAAAGTTTGATATCCATGGAGCCATGTTTGCCGCCCTTTGTCAGAAAAACAGCCTGAAAAATGTTGATTCAGGATTTTCAATTCCTTGCCTGGAAGAAGTGATGATCACAGTGAGATCACCGCTGAATGCTGAACAGAAAATGAGCACTCTTGAGTCCTTGTTAAAGTACGGGAAGAATCTGAAGACAATGGTGATAAAGATTCTTCAGATGAAGAGCAGTCATAGCAGTGCAGATGATTTCTTCGACGAGATTTGCAGGTTTAGACACATGAACCGAAAGATCGTTAGAATAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

453

Amino Acids

51.32

Weight (kDa)

6.72

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 147 - 234 1.5e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10780 AT1G10780
fragaria_vesca FvH4_5g29550 FvH4_5g29550
malus_domestica MD08G1228700.v1.1 MD15G1422700.v1.1
prunus_persica Prupe.1G568000_v2.0.a1
pyrus_communis pycom15g37460
rosa_chinensis RchiOBHm_Chr7g0222501
rosa_laevigata RLG00000002049
rosa_multiflora Rmu_ssc0000146.1_g000020
rosa_roxburghii Rroxscaffold_3G00236730
rosa_rugosa Rorug07G0209900 Rorug07G0210000 Rorug07G0210000
rosa_samantha Rh7AG351700 Rh7BG342300 Rh7CG369100 Rh7DG348400
rosa_wichuraiana Rw7G029690 Rw7G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1308
AccB1I GGYRCC 1 cut(s) 744
AccB7I CCANNNNNTGG 2 cut(s) 100, 192
AccI GTMKAC 1 cut(s) 849
AciI CCGC 3 cut(s) 43, 1092, 1181
AclWI GGATC 4 cut(s) 60, 581, 594, 994
AcsI RAATTY 5 cut(s) 76, 88, 481, 758, 980
AcuI CTGAAG 3 cut(s) 593, 1250, 1262
AfaI GTAC 2 cut(s) 143, 1229
AfiI CCNNNNNNNGG 6 cut(s) 100, 192, 344, 531, 532, 533
AflII CTTAAG 2 cut(s) 389, 466
AjnI CCWGG 1 cut(s) 1149
AluBI AGCT 5 cut(s) 240, 403, 703, 783, 1057
AluI AGCT 5 cut(s) 240, 403, 703, 783, 1057
Alw21I GWGCWC 1 cut(s) 1208
Alw26I GTCTC 2 cut(s) 17, 258
AlwI GGATC 4 cut(s) 60, 581, 594, 994
Ama87I CYCGRG 1 cut(s) 343
AoxI GGCC 3 cut(s) 352, 516, 612
ApeKI GCWGC 2 cut(s) 473, 1057
ApoI RAATTY 5 cut(s) 76, 88, 481, 758, 980
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 3 cut(s) 103, 380, 517
AsuHPI GGTGA 3 cut(s) 619, 1170, 1264
AsuII TTCGAA 1 cut(s) 406
AvaI CYCGRG 1 cut(s) 343
AvaII GGWCC 2 cut(s) 103, 380
BaeGI GKGCMC 1 cut(s) 749
BamHI GGATCC 1 cut(s) 586
BanI GGYRCC 1 cut(s) 744
BbsI GAAGAC 2 cut(s) 532, 1250
Bbv12I GWGCWC 1 cut(s) 1208
BbvI GCAGC 2 cut(s) 460, 1044
BccI CCATC 4 cut(s) 102, 186, 286, 1056
BciT130I CCWGG 1 cut(s) 1151
BciVI GTATCC 1 cut(s) 193
BclI TGATCA 2 cut(s) 372, 1164
BcoDI GTCTC 2 cut(s) 17, 258
BfaI CTAG 1 cut(s) 881
BfmI CTRYAG 2 cut(s) 474, 778
BfoI RGCGCY 1 cut(s) 20
BfrI CTTAAG 2 cut(s) 389, 466
BfuAI ACCTGC 1 cut(s) 1308
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 3 cut(s) 474, 1058, 1092
BlsI GCNGC 3 cut(s) 475, 1059, 1093
Bme1390I CCNGG 1 cut(s) 1151
Bme18I GGWCC 2 cut(s) 103, 380
BmeT110I CYCGRG 1 cut(s) 343
BmgT120I GGNCC 3 cut(s) 103, 380, 517
BmiI GGNNCC 6 cut(s) 105, 221, 382, 588, 746, 1081
BmrFI CCNGG 1 cut(s) 1151
BmsI GCATC 2 cut(s) 106, 910
BpiI GAAGAC 2 cut(s) 532, 1250
BpmI CTGGAG 2 cut(s) 419, 602
Bpu14I TTCGAA 1 cut(s) 406
BpuEI CTTGAG 3 cut(s) 536, 785, 1232
BsaBI GATNNNNATC 1 cut(s) 661
BsaJI CCNNGG 2 cut(s) 738, 1075
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 6 cut(s) 100, 192, 344, 531, 532, 533
Bse1I ACTGG 3 cut(s) 462, 585, 907
Bse8I GATNNNNATC 1 cut(s) 661
BseBI CCWGG 1 cut(s) 1151
BseDI CCNNGG 2 cut(s) 738, 1075
BseGI GGATG 2 cut(s) 925, 1048
BseJI GATNNNNATC 1 cut(s) 661
BseLI CCNNNNNNNGG 6 cut(s) 100, 192, 344, 531, 532, 533
BseMII CTCAG 2 cut(s) 76, 987
BseNI ACTGG 3 cut(s) 462, 585, 907
BseSI GKGCMC 1 cut(s) 749
BseXI GCAGC 2 cut(s) 460, 1044
BsgI GTGCAG 1 cut(s) 1311
BshFI GGCC 3 cut(s) 354, 518, 614
BshNI GGYRCC 1 cut(s) 744
BsiHKAI GWGCWC 1 cut(s) 1208
BsiHKCI CYCGRG 1 cut(s) 343
BslFI GGGAC 2 cut(s) 321, 366
BslI CCNNNNNNNGG 6 cut(s) 100, 192, 344, 531, 532, 533
BsmAI GTCTC 2 cut(s) 17, 258
BsmBI CGTCTC 1 cut(s) 17
BsmFI GGGAC 2 cut(s) 321, 366
BsmI GAATGC 1 cut(s) 1192
BsnI GGCC 3 cut(s) 354, 518, 614
BsoBI CYCGRG 1 cut(s) 343
Bsp119I TTCGAA 1 cut(s) 406
Bsp1286I GDGCHC 2 cut(s) 749, 1208
Bsp143I GATC 8 cut(s) 65, 372, 586, 662, 999, 1164, 1175, 1341
Bsp19I CCATGG 2 cut(s) 738, 1075
BspACI CCGC 3 cut(s) 43, 1092, 1181
BspANI GGCC 3 cut(s) 354, 518, 614
BspCNI CTCAG 2 cut(s) 75, 988
BspHI TCATGA 1 cut(s) 969
BspLI GGNNCC 6 cut(s) 105, 221, 382, 588, 746, 1081
BspMAI CTGCAG 1 cut(s) 478
BspMI ACCTGC 1 cut(s) 1308
BspPI GGATC 4 cut(s) 60, 581, 594, 994
BspQI GCTCTTC 1 cut(s) 1268
BspT104I TTCGAA 1 cut(s) 406
BspT107I GGYRCC 1 cut(s) 744
BspTI CTTAAG 2 cut(s) 389, 466
BsrI ACTGG 3 cut(s) 462, 585, 907
BssECI CCNNGG 2 cut(s) 738, 1075
BssMI GATC 8 cut(s) 65, 372, 586, 662, 999, 1164, 1175, 1341
BssT1I CCWWGG 2 cut(s) 738, 1075
Bst2UI CCWGG 1 cut(s) 1151
Bst4CI ACNGT 3 cut(s) 269, 604, 1171
Bst6I CTCTTC 1 cut(s) 1268
BstAFI CTTAAG 2 cut(s) 389, 466
BstBI TTCGAA 1 cut(s) 406
BstC8I GCNNGC 2 cut(s) 41, 352
BstDEI CTNAG 2 cut(s) 62, 996
BstDSI CCRYGG 2 cut(s) 738, 1075
BstF5I GGATG 2 cut(s) 925, 1048
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 8 cut(s) 68, 375, 589, 665, 1002, 1167, 1178, 1344
BstMAI GTCTC 2 cut(s) 17, 258
BstMBI GATC 8 cut(s) 65, 372, 586, 662, 999, 1164, 1175, 1341
BstMWI GCNNNNNNNGC 5 cut(s) 356, 700, 836, 1088, 1284
BstNI CCWGG 1 cut(s) 1151
BstSCI CCNGG 1 cut(s) 1149
BstSFI CTRYAG 2 cut(s) 474, 778
BstSLI GKGCMC 1 cut(s) 749
BstV1I GCAGC 2 cut(s) 460, 1044
BstV2I GAAGAC 2 cut(s) 532, 1250
BstX2I RGATCY 3 cut(s) 65, 586, 999
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 3 cut(s) 65, 586, 999
BsuI GTATCC 1 cut(s) 193
BsuRI GGCC 3 cut(s) 354, 518, 614
BtgI CCRYGG 2 cut(s) 738, 1075
BtgZI GCGATG 1 cut(s) 205
BtsCI GGATG 2 cut(s) 925, 1048
BtsI GCAGTG 2 cut(s) 701, 1294
BtsIMutI CAGTG 4 cut(s) 701, 914, 1176, 1294
BveI ACCTGC 1 cut(s) 1308
Cac8I GCNNGC 2 cut(s) 41, 352
CciI TCATGA 1 cut(s) 969
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 3 cut(s) 103, 380, 517
Csp6I GTAC 2 cut(s) 142, 1228
CviAII CATG 7 cut(s) 145, 739, 853, 970, 1076, 1084, 1330
CviQI GTAC 2 cut(s) 142, 1228
DdeI CTNAG 2 cut(s) 62, 996
DpnI GATC 8 cut(s) 67, 374, 588, 664, 1001, 1166, 1177, 1343
DpnII GATC 8 cut(s) 65, 372, 586, 662, 999, 1164, 1175, 1341
DraI TTTAAA 1 cut(s) 495
Eam1104I CTCTTC 1 cut(s) 1268
EarI CTCTTC 1 cut(s) 1268
Eco130I CCWWGG 2 cut(s) 738, 1075
Eco147I AGGCCT 1 cut(s) 614
Eco32I GATATC 1 cut(s) 1072
Eco47I GGWCC 2 cut(s) 103, 380
Eco57I CTGAAG 3 cut(s) 593, 1250, 1262
Eco88I CYCGRG 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 380
EcoRI GAATTC 1 cut(s) 980
EcoRII CCWGG 1 cut(s) 1149
EcoRV GATATC 1 cut(s) 1072
EcoT14I CCWWGG 2 cut(s) 738, 1075
ErhI CCWWGG 2 cut(s) 738, 1075
Esp3I CGTCTC 1 cut(s) 17
FaeI CATG 7 cut(s) 148, 742, 856, 973, 1079, 1087, 1333
FalI AAGNNNNNCTT 2 cut(s) 692, 724
FaqI GGGAC 2 cut(s) 321, 366
FatI CATG 7 cut(s) 144, 738, 852, 969, 1075, 1083, 1329
FbaI TGATCA 2 cut(s) 372, 1164
FblI GTMKAC 1 cut(s) 849
Fnu4HI GCNGC 3 cut(s) 474, 1058, 1092
FokI GGATG 2 cut(s) 932, 1035
Fsp4HI GCNGC 3 cut(s) 474, 1058, 1092
FspBI CTAG 1 cut(s) 881
GlaI GCGC 1 cut(s) 18
GluI GCNGC 3 cut(s) 474, 1058, 1092
GsuI CTGGAG 2 cut(s) 419, 602
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 3 cut(s) 354, 518, 614
HhaI GCGC 1 cut(s) 19
Hin1II CATG 7 cut(s) 148, 742, 856, 973, 1079, 1087, 1333
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HincII GTYRAC 2 cut(s) 600, 1024
HindII GTYRAC 2 cut(s) 600, 1024
HphI GGTGA 3 cut(s) 619, 1170, 1264
Hpy166II GTNNAC 3 cut(s) 600, 850, 1024
Hpy188I TCNGA 7 cut(s) 65, 432, 621, 997, 1104, 1242, 1269
Hpy8I GTNNAC 3 cut(s) 600, 850, 1024
Hpy99I CGWCG 1 cut(s) 1310
HpyAV CCTTC 6 cut(s) 190, 349, 459, 647, 967, 1013
HpyCH4III ACNGT 3 cut(s) 269, 604, 1171
HpyCH4IV ACGT 2 cut(s) 26, 162
HpyF10VI GCNNNNNNNGC 5 cut(s) 356, 700, 836, 1088, 1284
HpyF3I CTNAG 2 cut(s) 62, 996
HpySE526I ACGT 2 cut(s) 26, 162
Hsp92II CATG 7 cut(s) 148, 742, 856, 973, 1079, 1087, 1333
HspAI GCGC 1 cut(s) 17
Ksp22I TGATCA 2 cut(s) 372, 1164
Kzo9I GATC 8 cut(s) 65, 372, 586, 662, 999, 1164, 1175, 1341
LguI GCTCTTC 1 cut(s) 1268
LmnI GCTCC 6 cut(s) 219, 245, 400, 572, 691, 1079
Lsp1109I GCAGC 2 cut(s) 460, 1044
LweI GCATC 2 cut(s) 106, 910
MaeI CTAG 1 cut(s) 881
MaeII ACGT 2 cut(s) 26, 162
MaeIII GTNAC 1 cut(s) 639
MalI GATC 8 cut(s) 67, 374, 588, 664, 1001, 1166, 1177, 1343
MboI GATC 8 cut(s) 65, 372, 586, 662, 999, 1164, 1175, 1341
MboII GAAGA 9 cut(s) 301, 532, 1030, 1166, 1246, 1255, 1256, 1285, 1294
MfeI CAATTG 1 cut(s) 672
MflI RGATCY 3 cut(s) 65, 586, 999
MhlI GDGCHC 2 cut(s) 749, 1208
MlyI GAGTC 4 cut(s) 194, 497, 912, 1223
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 6 cut(s) 117, 394, 445, 577, 760, 1012
MseI TTAA 5 cut(s) 390, 467, 494, 756, 1223
MslI CAYNNNNRTG 3 cut(s) 258, 974, 1287
MspA1I CMGCKG 1 cut(s) 1183
MspCI CTTAAG 2 cut(s) 389, 466
MspR9I CCNGG 1 cut(s) 1151
MunI CAATTG 1 cut(s) 672
Mva1269I GAATGC 1 cut(s) 1192
MvaI CCWGG 1 cut(s) 1151
MwoI GCNNNNNNNGC 5 cut(s) 356, 700, 836, 1088, 1284
NcoI CCATGG 2 cut(s) 738, 1075
NdeII GATC 8 cut(s) 65, 372, 586, 662, 999, 1164, 1175, 1341
NlaIII CATG 7 cut(s) 148, 742, 856, 973, 1079, 1087, 1333
NlaIV GGNNCC 6 cut(s) 105, 221, 382, 588, 746, 1081
NspV TTCGAA 1 cut(s) 406
PagI TCATGA 1 cut(s) 969
PceI AGGCCT 1 cut(s) 614
PciSI GCTCTTC 1 cut(s) 1268
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 1 cut(s) 1192
PfeI GAWTC 6 cut(s) 622, 787, 992, 1127, 1237, 1261
PflMI CCANNNNNTGG 2 cut(s) 100, 192
PkrI GCNGC 3 cut(s) 475, 1059, 1093
PleI GAGTC 4 cut(s) 194, 496, 911, 1222
PpsI GAGTC 4 cut(s) 194, 496, 911, 1222
PpuMI RGGWCCY 1 cut(s) 380
Psp5II RGGWCCY 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 1149
PspGI CCWGG 1 cut(s) 1149
PspN4I GGNNCC 6 cut(s) 105, 221, 382, 588, 746, 1081
PspPI GGNCC 3 cut(s) 103, 380, 517
PspPPI RGGWCCY 1 cut(s) 380
PstI CTGCAG 1 cut(s) 478
PsuI RGATCY 3 cut(s) 65, 586, 999
RsaI GTAC 2 cut(s) 143, 1229
RsaNI GTAC 2 cut(s) 142, 1228
RseI CAYNNNNRTG 3 cut(s) 258, 974, 1287
SapI GCTCTTC 1 cut(s) 1268
SaqAI TTAA 5 cut(s) 390, 467, 494, 756, 1223
SatI GCNGC 3 cut(s) 474, 1058, 1092
Sau3AI GATC 8 cut(s) 65, 372, 586, 662, 999, 1164, 1175, 1341
Sau96I GGNCC 3 cut(s) 103, 380, 517
SchI GAGTC 4 cut(s) 194, 497, 912, 1223
ScrFI CCNGG 1 cut(s) 1151
SduI GDGCHC 2 cut(s) 749, 1208
SfaNI GCATC 2 cut(s) 106, 910
SfcI CTRYAG 2 cut(s) 474, 778
SfuI TTCGAA 1 cut(s) 406
SinI GGWCC 2 cut(s) 103, 380
SmiMI CAYNNNNRTG 3 cut(s) 258, 974, 1287
SmlI CTYRAG 5 cut(s) 389, 466, 551, 764, 1211
SmoI CTYRAG 5 cut(s) 389, 466, 551, 764, 1211
SseBI AGGCCT 1 cut(s) 614
SsiI CCGC 3 cut(s) 43, 1092, 1181
SspI AATATT 1 cut(s) 418
SspMI CTAG 1 cut(s) 881
StuI AGGCCT 1 cut(s) 614
StyD4I CCNGG 1 cut(s) 1149
StyI CCWWGG 2 cut(s) 738, 1075
TaaI ACNGT 3 cut(s) 269, 604, 1171
TaiI ACGT 2 cut(s) 29, 165
TaqI TCGA 2 cut(s) 406, 1305
TauI GCSGC 1 cut(s) 1094
TfiI GAWTC 6 cut(s) 622, 787, 992, 1127, 1237, 1261
Tru1I TTAA 5 cut(s) 390, 467, 494, 756, 1223
Tru9I TTAA 5 cut(s) 390, 467, 494, 756, 1223
TscAI CASTG 4 cut(s) 701, 914, 1176, 1294
TseI GCWGC 2 cut(s) 473, 1057
TspDTI ATGAA 4 cut(s) 958, 986, 1286, 1346
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 4 cut(s) 701, 914, 1176, 1294
Van91I CCANNNNNTGG 2 cut(s) 100, 192
Vha464I CTTAAG 2 cut(s) 389, 466
VpaK11BI GGWCC 2 cut(s) 103, 380
XapI RAATTY 5 cut(s) 76, 88, 481, 758, 980
XbaI TCTAGA 1 cut(s) 880
XmiI GTMKAC 1 cut(s) 849
XspI CTAG 1 cut(s) 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.