Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015884

Physical Location & Seq

Genomic Coordinates Reverse (-)

37763541 .. 37765132

Gene Structure 1592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGCTCGGAATATCGAATATCTGCAAAGGATACAAATCCTTTGTTATGAAATTGGCCCCCAACCATAAGCACGGAGACTCAAAGTTTGCAGACAACCATGACACCACCAAGGACGACGAAAATTTTACAATTAGTTACCCAACAACGCCGGTAGGGGGTTTCGATAATCAACGAAGTATTGATGATAACTTCTTGCGCCGAAGTCTTTCAAGGACCTCGAGTAGAAGATGTAAGACACCCACACCGAGGAGCTTCTCAAGAAGTGCAAGCCGGAGCACCACTCCGACACCCTCGTCGTTGTCAAGAAATATGAGTCGAAGGAATGCCATGGAGACCGAAATTTCTGCTTCTGTTTCGAGAAATATGGGTCGAAGGAGCACTTCAGAGATGGAAATTCCTTCCCTTCTATCAAGAAATATGAGCCGGAGGCACCCATTTGAGACTGAAATACATTCTCCATCACCCACCACAGCATCTGCACCAGCCTCTCCAGCGCCTGCCTCTCCAGCTCCCGCTTCTCCATCACCCGCCTCTCCATCGCCAACCTCTCAAACGTCTAATGCCAGTAAATCAGGCACGTCTGATCAACCGGAGTCTTTATCAAGAAGTGTGAGCAAGAGGAGCACAACCCCGATTGTCTTCTCTCGGACAACTGCAAGAAAGAAACCTCGTCCGATTGAGAAGAAGCTTGCATTCACACTTGAAGAGTTGTGTCACGGATGCGTAAAGAAGATCAAGATCACAAGAGATGTCATCAACAATACTGGTATCATTGTCCAAGAAGAGGAAACACTGAAAATAAACGTGCAGCCGGGATGGAGGAAAGGAACGAAGATTACATTTGAAGCGAAAGGCGATGAGAAACCAGGTTACCTCCCAGCTGACATACTCTTCTTGATAGATGAAAAGAGGCACCATCTGTTTAAGAGATCAGGCCGCGATGATTTGGAAATCGCTGTTGAGATCCCTCTGGCAGATGCACTGGGAGGCTGCTCATTTCCAGTTCCTCTGCTAAGAGGAGACAAAATGACACTTTCATTCGACGACATCATATATCATGGCTATGTAAAGGTCATTCCAGGACAAGGAATGCCAAAGCTTAGAGACCCAACAGCGAGAGGCGACCTCCGCATCACATGTCTCGTAAAATTTCCGACACATGTGAGCGACGAGAAAAGAGCAGAAGCAGTTGAAATTCTACAAGATTGTTCTTATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005623 GO:0005929 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0044085 GO:0044422 GO:0044441 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097224 GO:0097729 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

407

Amino Acids

44.85

Weight (kDa)

9.52

Isoelectric Point (pI)

73.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	226 - 385	3.4e-34	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11040
fragaria_vesca	FvH4_5g29110
malus_domestica	MD08G1235600.v1.1 MD15G1427300.v1.1
prunus_persica	Prupe.1G571300_v2.0.a1
pyrus_communis	pycom15g37880
rosa_chinensis	RchiOBHm_Chr7g0221771
rosa_laevigata	RLG00000002125
rosa_roxburghii	Rroxscaffold_3G00237740
rosa_rugosa	Rorug07G0203200
rosa_samantha	Rh7AG344100 Rh7BG334800 Rh7CG361500 Rh7DG341900
rosa_wichuraiana	Rw7G029180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	292
AccB1I	GGYRCC	2 cut(s)	429, 912
AccII	CGCG	1 cut(s)	939
AciI	CCGC	4 cut(s)	513, 528, 937, 1129
AclWI	GGATC	1 cut(s)	958
AcsI	RAATTY	5 cut(s)	121, 339, 393, 1148, 1194
AcuI	CTGAAG	1 cut(s)	366
AfiI	CCNNNNNNNGG	4 cut(s)	155, 246, 784, 1085
AflIII	ACRYGT	2 cut(s)	1136, 1159
AgsI	TTSAA	4 cut(s)	210, 704, 845, 1193
AjiI	CACGTC	1 cut(s)	579
AjnI	CCWGG	2 cut(s)	865, 1078
AluBI	AGCT	5 cut(s)	252, 509, 688, 881, 1099
AluI	AGCT	5 cut(s)	252, 509, 688, 881, 1099
Alw21I	GWGCWC	3 cut(s)	278, 380, 626
Alw26I	GTCTC	6 cut(s)	69, 326, 434, 1014, 1098, 1145
AlwI	GGATC	1 cut(s)	958
AlwNI	CAGNNNCTG	2 cut(s)	476, 497
Ama87I	CYCGRG	1 cut(s)	217
AoxI	GGCC	2 cut(s)	54, 934
ApeKI	GCWGC	2 cut(s)	808, 990
ApoI	RAATTY	5 cut(s)	121, 339, 393, 1148, 1194
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
Asp700I	GAANNNNTTC	1 cut(s)	205
AspLEI	GCGC	2 cut(s)	198, 496
AspS9I	GGNCC	2 cut(s)	55, 213
AsuC2I	CCSGG	1 cut(s)	813
AsuHPI	GGTGA	2 cut(s)	453, 516
AvaI	CYCGRG	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	213
BanI	GGYRCC	2 cut(s)	429, 912
BbsI	GAAGAC	1 cut(s)	631
Bbv12I	GWGCWC	3 cut(s)	278, 380, 626
BbvI	GCAGC	2 cut(s)	820, 977
BccI	CCATC	6 cut(s)	382, 466, 529, 544, 810, 924
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	2 cut(s)	867, 1080
BciVI	GTATCC	1 cut(s)	23
BclI	TGATCA	1 cut(s)	583
BcnI	CCSGG	1 cut(s)	813
BcoDI	GTCTC	6 cut(s)	69, 326, 434, 1014, 1098, 1145
BfoI	RGCGCY	1 cut(s)	497
BfuI	GTATCC	1 cut(s)	23
BisI	GCNGC	3 cut(s)	809, 937, 991
BlsI	GCNGC	3 cut(s)	810, 938, 992
Bme1390I	CCNGG	3 cut(s)	813, 867, 1080
Bme18I	GGWCC	1 cut(s)	213
BmeT110I	CYCGRG	1 cut(s)	217
BmgBI	CACGTC	1 cut(s)	579
BmgT120I	GGNCC	2 cut(s)	55, 213
BmiI	GGNNCC	3 cut(s)	57, 431, 914
BmrFI	CCNGG	3 cut(s)	813, 867, 1080
BmrI	ACTGGG	1 cut(s)	992
BmsI	GCATC	4 cut(s)	482, 710, 967, 1140
BmuI	ACTGGG	1 cut(s)	992
BpiI	GAAGAC	1 cut(s)	631
BplI	GAGNNNNNCTC	4 cut(s)	265, 297, 1110, 1142
BpmI	CTGGAG	2 cut(s)	474, 489
BpuEI	CTTGAG	1 cut(s)	241
BpuMI	CCSGG	1 cut(s)	813
BsaBI	GATNNNNATC	2 cut(s)	34, 737
BsaI	GGTCTC	2 cut(s)	326, 1098
BsaJI	CCNNGG	3 cut(s)	108, 245, 327
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 246, 784, 1085
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	4 cut(s)	564, 769, 987, 1001
Bse8I	GATNNNNATC	2 cut(s)	34, 737
BseBI	CCWGG	2 cut(s)	867, 1080
BseDI	CCNNGG	3 cut(s)	108, 245, 327
BseGI	GGATG	2 cut(s)	725, 821
BseJI	GATNNNNATC	2 cut(s)	34, 737
BseLI	CCNNNNNNNGG	4 cut(s)	155, 246, 784, 1085
BseNI	ACTGG	4 cut(s)	564, 769, 987, 1001
BseRI	GAGGAG	3 cut(s)	262, 634, 1032
BseXI	GCAGC	2 cut(s)	820, 977
BseYI	CCCAGC	1 cut(s)	877
BsgI	GTGCAG	2 cut(s)	462, 827
Bsh1236I	CGCG	1 cut(s)	939
BshFI	GGCC	2 cut(s)	56, 936
BshNI	GGYRCC	2 cut(s)	429, 912
BsiHKAI	GWGCWC	3 cut(s)	278, 380, 626
BsiHKCI	CYCGRG	1 cut(s)	217
BsiSI	CCGG	5 cut(s)	149, 271, 424, 590, 812
BslI	CCNNNNNNNGG	4 cut(s)	155, 246, 784, 1085
BsmAI	GTCTC	6 cut(s)	69, 326, 434, 1014, 1098, 1145
BsmI	GAATGC	3 cut(s)	328, 692, 1095
BsnI	GGCC	2 cut(s)	56, 936
Bso31I	GGTCTC	2 cut(s)	326, 1098
BsoBI	CYCGRG	1 cut(s)	217
Bsp1286I	GDGCHC	3 cut(s)	278, 380, 626
Bsp143I	GATC	5 cut(s)	583, 732, 738, 929, 963
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	4 cut(s)	513, 528, 937, 1129
BspANI	GGCC	2 cut(s)	56, 936
BspFNI	CGCG	1 cut(s)	939
BspLI	GGNNCC	3 cut(s)	57, 431, 914
BspPI	GGATC	1 cut(s)	958
BspT107I	GGYRCC	2 cut(s)	429, 912
BspTNI	GGTCTC	2 cut(s)	326, 1098
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	4 cut(s)	564, 769, 987, 1001
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	3 cut(s)	108, 245, 327
BssMI	GATC	5 cut(s)	583, 732, 738, 929, 963
BssT1I	CCWWGG	2 cut(s)	108, 327
Bst2UI	CCWGG	2 cut(s)	867, 1080
Bst6I	CTCTTC	3 cut(s)	699, 777, 896
BstC8I	GCNNGC	3 cut(s)	268, 498, 690
BstDEI	CTNAG	2 cut(s)	1013, 1100
BstDSI	CCRYGG	1 cut(s)	327
BstEII	GGTNACC	1 cut(s)	869
BstF5I	GGATG	2 cut(s)	725, 821
BstFNI	CGCG	1 cut(s)	939
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	2 cut(s)	198, 496
BstKTI	GATC	5 cut(s)	586, 735, 741, 932, 966
BstMAI	GTCTC	6 cut(s)	69, 326, 434, 1014, 1098, 1145
BstMBI	GATC	5 cut(s)	583, 732, 738, 929, 963
BstMWI	GCNNNNNNNGC	4 cut(s)	491, 506, 621, 1128
BstNI	CCWGG	2 cut(s)	867, 1080
BstNSI	RCATGY	2 cut(s)	1140, 1163
BstPI	GGTNACC	1 cut(s)	869
BstSCI	CCNGG	3 cut(s)	811, 865, 1078
BstUI	CGCG	1 cut(s)	939
BstV1I	GCAGC	2 cut(s)	820, 977
BstV2I	GAAGAC	1 cut(s)	631
BstX2I	RGATCY	1 cut(s)	963
BstYI	RGATCY	1 cut(s)	963
BsuI	GTATCC	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	56, 936
BtgI	CCRYGG	1 cut(s)	327
BtgZI	GCGATG	3 cut(s)	522, 870, 954
BtrI	CACGTC	1 cut(s)	579
BtsCI	GGATG	2 cut(s)	725, 821
BtsIMutI	CAGTG	2 cut(s)	791, 980
Cac8I	GCNNGC	3 cut(s)	268, 498, 690
CaiI	CAGNNNCTG	2 cut(s)	476, 497
CfoI	GCGC	2 cut(s)	198, 496
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	55, 213
CsiI	ACCWGGT	1 cut(s)	865
CviAII	CATG	5 cut(s)	98, 328, 1058, 1137, 1160
DdeI	CTNAG	2 cut(s)	1013, 1100
DpnI	GATC	5 cut(s)	585, 734, 740, 931, 965
DpnII	GATC	5 cut(s)	583, 732, 738, 929, 963
DrdI	GACNNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	1 cut(s)	292
Eam1104I	CTCTTC	3 cut(s)	699, 777, 896
EarI	CTCTTC	3 cut(s)	699, 777, 896
Eco130I	CCWWGG	2 cut(s)	108, 327
Eco31I	GGTCTC	2 cut(s)	326, 1098
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	217
Eco91I	GGTNACC	1 cut(s)	869
EcoO109I	RGGNCCY	1 cut(s)	213
EcoO65I	GGTNACC	1 cut(s)	869
EcoRII	CCWGG	2 cut(s)	865, 1078
EcoT14I	CCWWGG	2 cut(s)	108, 327
ErhI	CCWWGG	2 cut(s)	108, 327
FaeI	CATG	5 cut(s)	101, 331, 1061, 1140, 1163
FalI	AAGNNNNNCTT	2 cut(s)	364, 396
FatI	CATG	5 cut(s)	97, 327, 1057, 1136, 1159
FauI	CCCGC	2 cut(s)	520, 535
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	3 cut(s)	809, 937, 991
FokI	GGATG	2 cut(s)	732, 828
Fsp4HI	GCNGC	3 cut(s)	809, 937, 991
GlaI	GCGC	2 cut(s)	197, 495
GluI	GCNGC	3 cut(s)	809, 937, 991
GsaI	CCCAGC	1 cut(s)	881
GsuI	CTGGAG	2 cut(s)	474, 489
HaeII	RGCGCY	1 cut(s)	497
HaeIII	GGCC	2 cut(s)	56, 936
HapII	CCGG	5 cut(s)	149, 271, 424, 590, 812
HhaI	GCGC	2 cut(s)	198, 496
Hin1II	CATG	5 cut(s)	101, 331, 1061, 1140, 1163
Hin6I	GCGC	2 cut(s)	196, 494
HinP1I	GCGC	2 cut(s)	196, 494
HindIII	AAGCTT	2 cut(s)	686, 1097
HinfI	GANTC	3 cut(s)	77, 313, 593
HpaII	CCGG	5 cut(s)	149, 271, 424, 590, 812
HphI	GGTGA	2 cut(s)	453, 516
Hpy188I	TCNGA	7 cut(s)	8, 285, 385, 583, 648, 675, 1155
Hpy188III	TCNNGA	7 cut(s)	258, 303, 357, 411, 603, 736, 895
Hpy99I	CGWCG	4 cut(s)	119, 298, 1046, 1172
HpyAV	CCTTC	4 cut(s)	312, 366, 408, 413
HpyCH4IV	ACGT	3 cut(s)	554, 578, 804
HpyCH4V	TGCA	8 cut(s)	24, 89, 266, 479, 656, 692, 808, 980
HpyF10VI	GCNNNNNNNGC	4 cut(s)	491, 506, 621, 1128
HpyF3I	CTNAG	2 cut(s)	1013, 1100
HpySE526I	ACGT	3 cut(s)	554, 578, 804
Hsp92II	CATG	5 cut(s)	101, 331, 1061, 1140, 1163
HspAI	GCGC	2 cut(s)	196, 494
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	5 cut(s)	583, 732, 738, 929, 963
LmnI	GCTCC	5 cut(s)	249, 273, 375, 514, 621
Lsp1109I	GCAGC	2 cut(s)	820, 977
LweI	GCATC	4 cut(s)	482, 710, 967, 1140
MabI	ACCWGGT	1 cut(s)	865
MaeII	ACGT	3 cut(s)	554, 578, 804
MaeIII	GTNAC	3 cut(s)	134, 713, 869
MalI	GATC	5 cut(s)	585, 734, 740, 931, 965
MboI	GATC	5 cut(s)	583, 732, 738, 929, 963
MboII	GAAGA	8 cut(s)	237, 631, 694, 716, 742, 794, 844, 883
MflI	RGATCY	1 cut(s)	963
MhlI	GDGCHC	3 cut(s)	278, 380, 626
MluCI	AATT	7 cut(s)	50, 121, 129, 339, 393, 1148, 1194
MlyI	GAGTC	3 cut(s)	71, 322, 602
MmeI	TCCRAC	2 cut(s)	308, 1178
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	2 cut(s)	924, 1219
MslI	CAYNNNNRTG	1 cut(s)	1062
MspA1I	CMGCKG	1 cut(s)	881
MspI	CCGG	5 cut(s)	149, 271, 424, 590, 812
MspR9I	CCNGG	3 cut(s)	813, 867, 1080
Mva1269I	GAATGC	3 cut(s)	328, 692, 1095
MvaI	CCWGG	2 cut(s)	867, 1080
MvnI	CGCG	1 cut(s)	939
MwoI	GCNNNNNNNGC	4 cut(s)	491, 506, 621, 1128
NciI	CCSGG	1 cut(s)	813
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	5 cut(s)	583, 732, 738, 929, 963
NlaIII	CATG	5 cut(s)	101, 331, 1061, 1140, 1163
NlaIV	GGNNCC	3 cut(s)	57, 431, 914
NmuCI	GTSAC	1 cut(s)	713
NspI	RCATGY	2 cut(s)	1140, 1163
PaeR7I	CTCGAG	1 cut(s)	217
PciI	ACATGT	2 cut(s)	1136, 1159
PctI	GAATGC	3 cut(s)	328, 692, 1095
PdmI	GAANNNNTTC	1 cut(s)	205
PfoI	TCCNGGA	1 cut(s)	1078
PkrI	GCNGC	3 cut(s)	810, 938, 992
PleI	GAGTC	3 cut(s)	71, 321, 601
PpsI	GAGTC	3 cut(s)	71, 321, 601
PpuMI	RGGWCCY	1 cut(s)	213
PscI	ACATGT	2 cut(s)	1136, 1159
Psp5II	RGGWCCY	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	865, 1078
PspEI	GGTNACC	1 cut(s)	869
PspFI	CCCAGC	1 cut(s)	877
PspGI	CCWGG	2 cut(s)	865, 1078
PspN4I	GGNNCC	3 cut(s)	57, 431, 914
PspPI	GGNCC	2 cut(s)	55, 213
PspPPI	RGGWCCY	1 cut(s)	213
PspXI	VCTCGAGB	1 cut(s)	217
PsrI	GAACNNNNNNTAC	2 cut(s)	820, 852
PstNI	CAGNNNCTG	2 cut(s)	476, 497
PsuI	RGATCY	1 cut(s)	963
PvuII	CAGCTG	1 cut(s)	881
RseI	CAYNNNNRTG	1 cut(s)	1062
SaqAI	TTAA	2 cut(s)	924, 1219
SatI	GCNGC	3 cut(s)	809, 937, 991
Sau3AI	GATC	5 cut(s)	583, 732, 738, 929, 963
Sau96I	GGNCC	2 cut(s)	55, 213
SchI	GAGTC	3 cut(s)	71, 322, 602
ScrFI	CCNGG	3 cut(s)	813, 867, 1080
SduI	GDGCHC	3 cut(s)	278, 380, 626
SexAI	ACCWGGT	1 cut(s)	865
SfaNI	GCATC	4 cut(s)	482, 710, 967, 1140
Sfr274I	CTCGAG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	213
SlaI	CTCGAG	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	1062
SmlI	CTYRAG	2 cut(s)	217, 256
SmoI	CTYRAG	2 cut(s)	217, 256
Sse9I	AATT	7 cut(s)	50, 121, 129, 339, 393, 1148, 1194
SsiI	CCGC	4 cut(s)	513, 528, 937, 1129
StyD4I	CCNGG	3 cut(s)	811, 865, 1078
StyI	CCWWGG	2 cut(s)	108, 327
TaiI	ACGT	3 cut(s)	557, 581, 807
TaqI	TCGA	7 cut(s)	14, 162, 218, 316, 356, 370, 1041
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	7 cut(s)	50, 121, 129, 339, 393, 1148, 1194
TauI	GCSGC	1 cut(s)	939
Tru1I	TTAA	2 cut(s)	924, 1219
Tru9I	TTAA	2 cut(s)	924, 1219
TscAI	CASTG	2 cut(s)	798, 987
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	2 cut(s)	808, 990
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	3 cut(s)	62, 918, 1026
TspGWI	ACGGA	2 cut(s)	87, 732
TspRI	CASTG	2 cut(s)	798, 987
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	5 cut(s)	121, 339, 393, 1148, 1194
XceI	RCATGY	2 cut(s)	1140, 1163
XhoI	CTCGAG	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.