Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014928

Physical Location & Seq

Genomic Coordinates Reverse (-)

38481979 .. 38485108

Gene Structure 3130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGATGAACTTTAAAGTGGGGCCGCGGGAAAAGCTTTTGGAGTGTCAAGGATTTGACGCCGATTATTTGTTCAAGCTTTTGCTAATTGGGGACTCGTCCGTTGGAAAATCTTGCTTGCTTCTCAGATTCGCTGATGATTCCTATGTAGACAGCTACATAAGCACCATTGGAGTTGATTTTAAAATCAGAACAGTGGAGCTGGATGGCAAGACAGTCAAGCTGCAGATTTGGGATACTGCTGGACAGGAGCGGTTCAGGACTATAACAAGCAGTTACTACCGAGGAGCACATGGGATAATTATTGTGTATGATGTTACCGAGATGGAGAGCTTCAATAATGTGAAGCAGTGGCTTAATGAGATTGACAGATATGCAAATGACAGCGTGTGCAAGCTTCTGGTTGGTAATAAATGTGATTTAGTTGAGAACAAGGTTGTTGACACACAAACTGCTAAGGCGTTTGCTGACGAGCTTGGGATCCCTTTCCTTGAGACAAGTGTTAAAGACTCGATCAATGTTGAGCAGGCTTTCTTAACCATGGCTGCCGAGATAAAGAAAAAAATGGGAAACCAACCAACTGCTAACAATTCGAGCGGAACTGTAGAAATGAAGGGCCAGCCAATTCAGCAGAACAGCAATTGTTGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006888 GO:0008092 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0017022 GO:0030742 GO:0031090 GO:0031984 GO:0032029 GO:0032036 GO:0032588 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0080115 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

217

Amino Acids

24.13

Weight (kDa)

5.05

Isoelectric Point (pI)

21.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	24 - 147	2.8e-16	ADP-ribosylation factor family
Ras	PF00071	25 - 185	2.8e-66	Ras family
Roc	PF08477	25 - 139	7.2e-37	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11730
fragaria_vesca	FvH4_5g28100
malus_domestica	MD08G1244400.v1.1 MD15G1439100.v1.1
prunus_persica	Prupe.1G581900_v2.0.a1
pyrus_communis	pycom08g21200 pycom15g38720
rosa_chinensis	RchiOBHm_Chr7g0220361
rosa_laevigata	RLG00000002226
rosa_multiflora	Rmu_sc0000099.1_g000014
rosa_roxburghii	Rroxscaffold_3G00239450
rosa_rugosa	Rorug07G0193200
rosa_samantha	Rh7AG334600 Rh7CG352300 Rh7DG331300
rosa_wichuraiana	Rw7G028250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	250, 594
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	25
AciI	CCGC	4 cut(s)	23, 25, 250, 594
AclWI	GGATC	2 cut(s)	472, 485
AcyI	GRCGYC	1 cut(s)	57
AgsI	TTSAA	2 cut(s)	73, 334
AluBI	AGCT	8 cut(s)	34, 76, 153, 199, 220, 330, 394, 472
AluI	AGCT	8 cut(s)	34, 76, 153, 199, 220, 330, 394, 472
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	472, 485
AoxI	GGCC	2 cut(s)	20, 613
ApeKI	GCWGC	2 cut(s)	220, 542
AspS9I	GGNCC	2 cut(s)	20, 613
BamHI	GGATCC	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	2 cut(s)	207, 529
BccI	CCATC	2 cut(s)	197, 316
BciVI	GTATCC	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	485
BfmI	CTRYAG	2 cut(s)	221, 600
BfuI	GTATCC	1 cut(s)	226
BisI	GCNGC	3 cut(s)	23, 221, 543
BlsI	GCNGC	3 cut(s)	24, 222, 544
BmgT120I	GGNCC	2 cut(s)	20, 613
BmiI	GGNNCC	2 cut(s)	21, 479
Bpu10I	CCTNAGC	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	23, 280, 537
BseDI	CCNNGG	3 cut(s)	23, 280, 537
BseGI	GGATG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	2 cut(s)	207, 529
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	22, 615
BsiHKAI	GWGCWC	1 cut(s)	289
BslFI	GGGAC	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	2 cut(s)	22, 615
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	477, 510
Bsp19I	CCATGG	1 cut(s)	537
BspACI	CCGC	4 cut(s)	23, 25, 250, 594
BspANI	GGCC	2 cut(s)	22, 615
BspCNI	CTCAG	1 cut(s)	135
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	21, 479
BspMAI	CTGCAG	1 cut(s)	225
BspPI	GGATC	2 cut(s)	472, 485
BsrBI	CCGCTC	2 cut(s)	250, 594
BssECI	CCNNGG	3 cut(s)	23, 280, 537
BssMI	GATC	2 cut(s)	477, 510
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	537
Bst4CI	ACNGT	3 cut(s)	193, 214, 601
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	4 cut(s)	116, 392, 525, 617
BstDEI	CTNAG	2 cut(s)	122, 453
BstDSI	CCRYGG	2 cut(s)	23, 537
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	480, 513
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	2 cut(s)	477, 510
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 159, 625
BstSFI	CTRYAG	2 cut(s)	221, 600
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	2 cut(s)	207, 529
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	22, 615
BtgI	CCRYGG	2 cut(s)	23, 537
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	2 cut(s)	198, 353
Cac8I	GCNNGC	4 cut(s)	116, 392, 525, 617
Cfr13I	GGNCC	2 cut(s)	20, 613
Cfr42I	CCGCGG	1 cut(s)	26
CseI	GACGC	1 cut(s)	65
CspCI	CAANNNNNGTGG	1 cut(s)	625
CviAII	CATG	2 cut(s)	290, 538
DdeI	CTNAG	2 cut(s)	122, 453
DpnI	GATC	2 cut(s)	479, 512
DpnII	GATC	2 cut(s)	477, 510
DraI	TTTAAA	2 cut(s)	13, 181
Eco130I	CCWWGG	1 cut(s)	537
EcoT14I	CCWWGG	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	537
FaeI	CATG	2 cut(s)	293, 541
FaiI	YATR	7 cut(s)	144, 158, 263, 291, 309, 372, 539
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	2 cut(s)	289, 537
FauI	CCCGC	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	3 cut(s)	23, 221, 543
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	23, 221, 543
GluI	GCNGC	3 cut(s)	23, 221, 543
HaeIII	GGCC	2 cut(s)	22, 615
HgaI	GACGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	293, 541
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	3 cut(s)	32, 74, 392
HinfI	GANTC	4 cut(s)	92, 126, 137, 506
Hpy166II	GTNNAC	2 cut(s)	148, 439
Hpy188I	TCNGA	2 cut(s)	125, 188
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	2 cut(s)	148, 439
HpyAV	CCTTC	1 cut(s)	604
HpyCH4III	ACNGT	3 cut(s)	193, 214, 601
HpyCH4V	TGCA	3 cut(s)	223, 374, 390
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 159, 625
HpyF3I	CTNAG	2 cut(s)	122, 453
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	293, 541
KspI	CCGCGG	1 cut(s)	26
Kzo9I	GATC	2 cut(s)	477, 510
LmnI	GCTCC	3 cut(s)	196, 247, 284
LpnPI	CCDG	7 cut(s)	185, 225, 230, 241, 383, 509, 629
Lsp1109I	GCAGC	2 cut(s)	207, 529
MaeIII	GTNAC	2 cut(s)	272, 313
MalI	GATC	2 cut(s)	479, 512
MbiI	CCGCTC	2 cut(s)	250, 594
MboI	GATC	2 cut(s)	477, 510
MfeI	CAATTG	1 cut(s)	637
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	5 cut(s)	84, 297, 586, 621, 637
MlyI	GAGTC	2 cut(s)	86, 500
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	1 cut(s)	275
MseI	TTAA	5 cut(s)	12, 180, 354, 501, 533
MspA1I	CMGCKG	1 cut(s)	25
MunI	CAATTG	1 cut(s)	637
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	3 cut(s)	31, 159, 625
NcoI	CCATGG	1 cut(s)	537
NdeII	GATC	2 cut(s)	477, 510
NlaIII	CATG	2 cut(s)	293, 541
NlaIV	GGNNCC	2 cut(s)	21, 479
NmeAIII	GCCGAG	1 cut(s)	571
PfeI	GAWTC	2 cut(s)	126, 137
PkrI	GCNGC	3 cut(s)	24, 222, 544
PleI	GAGTC	2 cut(s)	86, 500
PpsI	GAGTC	2 cut(s)	86, 500
PspN4I	GGNNCC	2 cut(s)	21, 479
PspPI	GGNCC	2 cut(s)	20, 613
PstI	CTGCAG	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	477
SacII	CCGCGG	1 cut(s)	26
SaqAI	TTAA	5 cut(s)	12, 180, 354, 501, 533
SatI	GCNGC	3 cut(s)	23, 221, 543
Sau3AI	GATC	2 cut(s)	477, 510
Sau96I	GGNCC	2 cut(s)	20, 613
SchI	GAGTC	2 cut(s)	86, 500
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	9 cut(s)	36, 78, 155, 201, 222, 332, 396, 435, 474
SfcI	CTRYAG	2 cut(s)	221, 600
Sfr303I	CCGCGG	1 cut(s)	26
SgrBI	CCGCGG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	5 cut(s)	84, 297, 586, 621, 637
SsiI	CCGC	4 cut(s)	23, 25, 250, 594
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	3 cut(s)	193, 214, 601
TaqI	TCGA	2 cut(s)	509, 590
TasI	AATT	5 cut(s)	84, 297, 586, 621, 637
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	2 cut(s)	126, 137
Tru1I	TTAA	5 cut(s)	12, 180, 354, 501, 533
Tru9I	TTAA	5 cut(s)	12, 180, 354, 501, 533
TscAI	CASTG	2 cut(s)	198, 353
TseI	GCWGC	2 cut(s)	220, 542
TspDTI	ATGAA	2 cut(s)	20, 623
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	2 cut(s)	198, 353
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.