Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004950

Physical Location & Seq

Genomic Coordinates Reverse (-)

38536334 .. 38541381

Gene Structure 5048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAACAAGGTTCTCAGTGCACATTTCCGCGCTTACATTCAAGCACTTGAGAAATTACAGTTAGATATAGCAACATCTAGTGATTTAATTGGTGTTGAGACTAGAAACACTAGTCTCTTTTTAAGAGGAAGGGAACCACTGAAGAACCGGTCTGCTGTCTTTGCCCTTGGGGAGAGGAGAAAAATTTTAAAGGAAATTGAGGAACCTGCATTGATTCCACATATAGCTGAAGCCAGCAACATCAAGTATCCATACGAGGTCCTCTTCAGGAGCTTGCACAAGCTACTTATGGATACTGCTACTTCCGAGTATCATTTCTGCGATGATTTCTTTGGTGAAGAATCCATATTTTATGAAATTTTTGCAGGCCCATTTTCTGTAATTGACGAGCACTTCAATTCAATACTTCCAAATTGTTACGATGCTATTGGGGTAATGCTTATGATTCGCATAATACACCAGCACCAGCTCATTATGTCTAGGCGGCGTATTCCATGCTTGGACTCATACCTTGATAAGGTCAATATTGCCCTATGGCCTCGCTTTAAGATGGTGTTTGACCTGCATCTAAACAGTCTGCGGAATGCAAATGTGAAGACATTGTGGGAAGATGATGTTCATCCTCACTATGTCATGAGGCGTTATGCTGAATTTACAGCTTCACTTATCCACCTCAATGTGGAATATGGAGATGGGCAGCTTGAATTAAATTTGGAGCGACTGAGAATGGCTATTGACGACTTGCTTATCAAGCTTGCTAAATCATTTCCAAAACCAAAACTACAAACCGTGTTTCTGATAAACAATTATGATATGACGATTGCTGTGTTGAAGGAAGCTGATCCAGAAGGTGGTAAAATTCAAATGCACTTTGAGGAACTTCTGAAAAGCAACACGGCATTATTTGTGGAAGAACTACTACTAGAGCATTTTGGCGATTTAATCAAGTTTGTTAAAACCCGAGCTTCGGAGGATCCAAGCGCTAGTTCTGAGAAGCCTATAACTGTTGCGGAGGTTGAGCCCCTCGTGAAGGACTTTGCAAGTAGATGGAAAGCTGCAATCGAACTGATGCACAAAGACGTCATAACTTCTTTCAGCAACTTCTTGTGTGGTATGGATCGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000149 GO:0000902 GO:0000904 GO:0000938 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0007034 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016197 GO:0016482 GO:0017016 GO:0017137 GO:0019899 GO:0019905 GO:0019953 GO:0022414 GO:0030154 GO:0031090 GO:0031267 GO:0031410 GO:0031982 GO:0031984 GO:0032456 GO:0032501 GO:0032502 GO:0032588 GO:0032989 GO:0032991 GO:0040007 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046907 GO:0048193 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051020 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0060560 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps52

Protein Analysis

376

Amino Acids

43.28

Weight (kDa)

5.89

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps52_C	PF20655	1 - 303	2e-127	Vps52, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71270 AT1G71300 AT1G71300
fragaria_vesca	FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140
malus_domestica	MD08G1244900.v1.1 MD15G1440000.v1.1
prunus_persica	Prupe.1G566400_v2.0.a1 Prupe.1G566400_v2.0.a1 Prupe.1G566400_v2.0.a1
pyrus_communis	pycom08g21240 pycom15g38790
rosa_chinensis	RchiOBHm_Chr6g0249411
rosa_laevigata	RLG00000015582
rosa_multiflora	Rmu_sc0000278.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217740
rosa_rugosa	Rorug05G0492100
rosa_samantha	Rh6AG002000 Rh6BG008200 Rh6CG001100 Rh6DG001200
rosa_wichuraiana	Rw6G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1083
Acc36I	ACCTGC	2 cut(s)	214, 570
AccB7I	CCANNNNNTGG	1 cut(s)	851
AccII	CGCG	1 cut(s)	30
AciI	CCGC	4 cut(s)	28, 484, 580, 1010
AclWI	GGATC	4 cut(s)	836, 968, 981, 1125
AcsI	RAATTY	5 cut(s)	183, 357, 650, 709, 858
AcuI	CTGAAG	3 cut(s)	161, 249, 250
AcyI	GRCGYC	1 cut(s)	1080
AfeI	AGCGCT	1 cut(s)	982
AfiI	CCNNNNNNNGG	5 cut(s)	517, 679, 851, 967, 1030
AgeI	ACCGGT	1 cut(s)	147
AgsI	TTSAA	6 cut(s)	41, 397, 402, 704, 832, 863
AhlI	ACTAGT	1 cut(s)	110
AjuI	GAANNNNNNNTTGG	2 cut(s)	970, 1002
Alw21I	GWGCWC	2 cut(s)	22, 393
Alw26I	GTCTC	2 cut(s)	92, 119
Alw44I	GTGCAC	1 cut(s)	18
AlwI	GGATC	4 cut(s)	836, 968, 981, 1125
Ama87I	CYCGRG	1 cut(s)	960
Aor51HI	AGCGCT	1 cut(s)	982
AoxI	GGCC	2 cut(s)	367, 536
ApaLI	GTGCAC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	697, 1055
ApoI	RAATTY	5 cut(s)	183, 357, 650, 709, 858
AsiGI	ACCGGT	1 cut(s)	147
AspLEI	GCGC	2 cut(s)	32, 983
AspS9I	GGNCC	2 cut(s)	259, 368
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	960
AvaII	GGWCC	1 cut(s)	259
BaeGI	GKGCMC	1 cut(s)	22
BamHI	GGATCC	1 cut(s)	973
BanII	GRGCYC	1 cut(s)	1023
BarI	GAAGNNNNNNTAC	2 cut(s)	903, 935
BauI	CACGAG	1 cut(s)	1025
BbsI	GAAGAC	1 cut(s)	602
Bbv12I	GWGCWC	2 cut(s)	22, 393
BbvI	GCAGC	2 cut(s)	709, 1042
BccI	CCATC	3 cut(s)	544, 686, 1041
BceAI	ACGGC	1 cut(s)	912
BciVI	GTATCC	2 cut(s)	258, 286
BcoDI	GTCTC	2 cut(s)	92, 119
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	6 cut(s)	78, 102, 111, 480, 923, 984
BfoI	RGCGCY	1 cut(s)	984
BfuAI	ACCTGC	2 cut(s)	214, 570
BfuI	GTATCC	2 cut(s)	258, 286
BisI	GCNGC	3 cut(s)	485, 698, 1056
BlsI	GCNGC	3 cut(s)	486, 699, 1057
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	960
BmgT120I	GGNCC	2 cut(s)	259, 368
BmiI	GGNNCC	3 cut(s)	135, 204, 975
BmsI	GCATC	3 cut(s)	412, 574, 1059
BpiI	GAAGAC	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	1120
BsaBI	GATNNNNATC	1 cut(s)	618
BsaHI	GRCGYC	1 cut(s)	1080
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	5 cut(s)	517, 679, 851, 967, 1030
Bse118I	RCCGGY	1 cut(s)	147
Bse8I	GATNNNNATC	1 cut(s)	618
BseCI	ATCGAT	1 cut(s)	1120
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	619
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	5 cut(s)	517, 679, 851, 967, 1030
BseMII	CTCAG	3 cut(s)	28, 713, 981
BseRI	GAGGAG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	709, 1042
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	369, 538
BshTI	ACCGGT	1 cut(s)	147
BshVI	ATCGAT	1 cut(s)	1120
BsiHKAI	GWGCWC	2 cut(s)	22, 393
BsiHKCI	CYCGRG	1 cut(s)	960
BsiSI	CCGG	1 cut(s)	148
BslI	CCNNNNNNNGG	5 cut(s)	517, 679, 851, 967, 1030
BsmAI	GTCTC	2 cut(s)	92, 119
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	2 cut(s)	369, 538
BsoBI	CYCGRG	1 cut(s)	960
Bsp1286I	GDGCHC	3 cut(s)	22, 393, 1023
Bsp143I	GATC	4 cut(s)	841, 973, 1117, 1121
BspACI	CCGC	4 cut(s)	28, 484, 580, 1010
BspANI	GGCC	2 cut(s)	369, 538
BspCNI	CTCAG	3 cut(s)	27, 714, 982
BspDI	ATCGAT	1 cut(s)	1120
BspFNI	CGCG	1 cut(s)	30
BspHI	TCATGA	1 cut(s)	633
BspLI	GGNNCC	3 cut(s)	135, 204, 975
BspMI	ACCTGC	2 cut(s)	214, 570
BspPI	GGATC	4 cut(s)	836, 968, 981, 1125
BsrFI	RCCGGY	1 cut(s)	147
BssAI	RCCGGY	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	4 cut(s)	841, 973, 1117, 1121
BssNI	GRCGYC	1 cut(s)	1080
BssSI	CACGAG	1 cut(s)	1025
BssT1I	CCWWGG	1 cut(s)	166
Bst2BI	CACGAG	1 cut(s)	1025
Bst4CI	ACNGT	4 cut(s)	60, 575, 790, 1006
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	1080
BstC8I	GCNNGC	4 cut(s)	235, 275, 367, 756
BstDEI	CTNAG	3 cut(s)	14, 722, 990
BstENI	CCTNNNNNAGG	2 cut(s)	515, 1028
BstF5I	GGATG	1 cut(s)	619
BstFNI	CGCG	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	984
BstHHI	GCGC	2 cut(s)	32, 983
BstKTI	GATC	4 cut(s)	844, 976, 1120, 1124
BstMAI	GTCTC	2 cut(s)	92, 119
BstMBI	GATC	4 cut(s)	841, 973, 1117, 1121
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 751
BstSLI	GKGCMC	1 cut(s)	22
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	709, 1042
BstV2I	GAAGAC	1 cut(s)	602
BstX2I	RGATCY	1 cut(s)	973
BstYI	RGATCY	1 cut(s)	973
Bsu15I	ATCGAT	1 cut(s)	1120
BsuI	GTATCC	2 cut(s)	258, 286
BsuRI	GGCC	2 cut(s)	369, 538
BsuTUI	ATCGAT	1 cut(s)	1120
BtgZI	GCGATG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	619
BtsIMutI	CAGTG	2 cut(s)	22, 137
BveI	ACCTGC	2 cut(s)	214, 570
Cac8I	GCNNGC	4 cut(s)	235, 275, 367, 756
CciI	TCATGA	1 cut(s)	633
CfoI	GCGC	2 cut(s)	32, 983
Cfr10I	RCCGGY	1 cut(s)	147
Cfr13I	GGNCC	2 cut(s)	259, 368
ClaI	ATCGAT	1 cut(s)	1120
CspAI	ACCGGT	1 cut(s)	147
CviAII	CATG	2 cut(s)	495, 634
DdeI	CTNAG	3 cut(s)	14, 722, 990
DpnI	GATC	4 cut(s)	843, 975, 1119, 1123
DpnII	GATC	4 cut(s)	841, 973, 1117, 1121
DraI	TTTAAA	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	1023
Eco47I	GGWCC	1 cut(s)	259
Eco47III	AGCGCT	1 cut(s)	982
Eco57I	CTGAAG	3 cut(s)	161, 249, 250
Eco88I	CYCGRG	1 cut(s)	960
EcoNI	CCTNNNNNAGG	2 cut(s)	515, 1028
EcoO109I	RGGNCCY	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	1023
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	2 cut(s)	498, 637
FatI	CATG	2 cut(s)	494, 633
Fnu4HI	GCNGC	3 cut(s)	485, 698, 1056
FokI	GGATG	1 cut(s)	606
FriOI	GRGCYC	1 cut(s)	1023
Fsp4HI	GCNGC	3 cut(s)	485, 698, 1056
FspBI	CTAG	6 cut(s)	78, 102, 111, 480, 923, 984
GlaI	GCGC	2 cut(s)	31, 982
GluI	GCNGC	3 cut(s)	485, 698, 1056
HaeII	RGCGCY	1 cut(s)	984
HaeIII	GGCC	2 cut(s)	369, 538
HapII	CCGG	1 cut(s)	148
HhaI	GCGC	2 cut(s)	32, 983
Hin1I	GRCGYC	1 cut(s)	1080
Hin1II	CATG	2 cut(s)	498, 637
Hin6I	GCGC	2 cut(s)	30, 981
HinP1I	GCGC	2 cut(s)	30, 981
HindIII	AAGCTT	1 cut(s)	752
HinfI	GANTC	4 cut(s)	214, 341, 445, 503
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	5 cut(s)	307, 798, 885, 970, 991
Hpy188III	TCNNGA	5 cut(s)	268, 634, 845, 1027, 1125
Hpy8I	GTNNAC	1 cut(s)	20
HpyAV	CCTTC	4 cut(s)	123, 826, 842, 1024
HpyCH4III	ACNGT	4 cut(s)	60, 575, 790, 1006
HpyCH4IV	ACGT	1 cut(s)	1080
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 751
HpyF3I	CTNAG	3 cut(s)	14, 722, 990
HpySE526I	ACGT	1 cut(s)	1080
Hsp92I	GRCGYC	1 cut(s)	1080
Hsp92II	CATG	2 cut(s)	498, 637
HspAI	GCGC	2 cut(s)	30, 981
Kzo9I	GATC	4 cut(s)	841, 973, 1117, 1121
LmnI	GCTCC	2 cut(s)	270, 715
LpnPI	CCDG	9 cut(s)	161, 219, 247, 253, 351, 473, 479, 575, 858
Lsp1109I	GCAGC	2 cut(s)	709, 1042
LweI	GCATC	3 cut(s)	412, 574, 1059
MaeI	CTAG	6 cut(s)	78, 102, 111, 480, 923, 984
MaeII	ACGT	1 cut(s)	1080
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	4 cut(s)	843, 975, 1119, 1123
MboI	GATC	4 cut(s)	841, 973, 1117, 1121
MboII	GAAGA	6 cut(s)	154, 256, 350, 607, 620, 923
MflI	RGATCY	1 cut(s)	973
MhlI	GDGCHC	3 cut(s)	22, 393, 1023
MlyI	GAGTC	1 cut(s)	497
MseI	TTAA	7 cut(s)	86, 122, 188, 546, 707, 941, 954
MslI	CAYNNNNRTG	1 cut(s)	675
MspI	CCGG	1 cut(s)	148
Mva1269I	GAATGC	1 cut(s)	589
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	161, 751
NdeII	GATC	4 cut(s)	841, 973, 1117, 1121
NlaIII	CATG	2 cut(s)	498, 637
NlaIV	GGNNCC	3 cut(s)	135, 204, 975
PagI	TCATGA	1 cut(s)	633
PctI	GAATGC	1 cut(s)	589
PfeI	GAWTC	3 cut(s)	214, 341, 445
PflMI	CCANNNNNTGG	1 cut(s)	851
PinAI	ACCGGT	1 cut(s)	147
PkrI	GCNGC	3 cut(s)	486, 699, 1057
PleI	GAGTC	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	497
PpuMI	RGGWCCY	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	259
PspN4I	GGNNCC	3 cut(s)	135, 204, 975
PspPI	GGNCC	2 cut(s)	259, 368
PspPPI	RGGWCCY	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	973
RseI	CAYNNNNRTG	1 cut(s)	675
SaqAI	TTAA	7 cut(s)	86, 122, 188, 546, 707, 941, 954
SatI	GCNGC	3 cut(s)	485, 698, 1056
Sau3AI	GATC	4 cut(s)	841, 973, 1117, 1121
Sau96I	GGNCC	2 cut(s)	259, 368
SchI	GAGTC	1 cut(s)	497
SduI	GDGCHC	3 cut(s)	22, 393, 1023
SfaNI	GCATC	3 cut(s)	412, 574, 1059
SinI	GGWCC	1 cut(s)	259
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SpeI	ACTAGT	1 cut(s)	110
SsiI	CCGC	4 cut(s)	28, 484, 580, 1010
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	6 cut(s)	78, 102, 111, 480, 923, 984
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	4 cut(s)	60, 575, 790, 1006
TaiI	ACGT	1 cut(s)	1083
TaqI	TCGA	2 cut(s)	1062, 1120
TauI	GCSGC	1 cut(s)	487
TfiI	GAWTC	3 cut(s)	214, 341, 445
Tru1I	TTAA	7 cut(s)	86, 122, 188, 546, 707, 941, 954
Tru9I	TTAA	7 cut(s)	86, 122, 188, 546, 707, 941, 954
TscAI	CASTG	2 cut(s)	22, 144
TseI	GCWGC	2 cut(s)	697, 1055
TspDTI	ATGAA	3 cut(s)	17, 369, 608
TspRI	CASTG	2 cut(s)	22, 144
Van91I	CCANNNNNTGG	1 cut(s)	851
VneI	GTGCAC	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	259
XagI	CCTNNNNNAGG	2 cut(s)	515, 1028
XapI	RAATTY	5 cut(s)	183, 357, 650, 709, 858
XspI	CTAG	6 cut(s)	78, 102, 111, 480, 923, 984
ZraI	GACGTC	1 cut(s)	1081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.