Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004950

Physical Location & Seq

Genomic Coordinates Reverse (-)

67479811 .. 67480765

Gene Structure 955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0492100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCTCCGATTGGAGGAGAAGACGAGGACGTGAATATGAAAAAGAAGGCGAAAGAGTCTCTGGAGCTGAGCCAGGACGAGTCAGAGGCCGTGTCGAGAATCGTCGTGCCGGCTCAGCGACCCGGCGAGTCGAGCATATACGATATGTTCTCTCTTAGAGGCATCAGAGTCGACCAAGCCCAACCCGGATTCGTCGTCTGTACTCTTAAGGTCCCTCCCCGCCTCACTGATAGAGCTGGAAATTTGGCCCAAGGTGCAATTGCAAACCTTGTTGATGTAGTTGGTGCTTCTGTAGCATATATTCACGGTCTCCCTATGAATGTTTCCGTAGACATATCTGTCTCCTACATGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000149 GO:0000902 GO:0000904 GO:0000938 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0007034 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016197 GO:0016482 GO:0017016 GO:0017137 GO:0019899 GO:0019905 GO:0019953 GO:0022414 GO:0030154 GO:0031090 GO:0031267 GO:0031410 GO:0031982 GO:0031984 GO:0032456 GO:0032501 GO:0032502 GO:0032588 GO:0032989 GO:0032991 GO:0040007 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046907 GO:0048193 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051020 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0060560 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps52

Protein Analysis

118

Amino Acids

12.6

Weight (kDa)

4.86

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71270 AT1G71300 AT1G71300
fragaria_vesca	FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140
malus_domestica	MD08G1244900.v1.1 MD15G1440000.v1.1
prunus_persica	Prupe.1G566400_v2.0.a1 Prupe.1G566400_v2.0.a1 Prupe.1G566400_v2.0.a1
pyrus_communis	pycom08g21240 pycom15g38790
rosa_chinensis	RchiOBHm_Chr6g0249411
rosa_laevigata	RLG00000015582
rosa_multiflora	Rmu_sc0000278.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217740
rosa_rugosa	Rorug05G0492100
rosa_samantha	Rh6AG002000 Rh6BG008200 Rh6CG001100 Rh6DG001200
rosa_wichuraiana	Rw6G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
AccI	GTMKAC	2 cut(s)	171, 330
AciI	CCGC	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	241
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	14
AflII	CTTAAG	1 cut(s)	206
AflIII	ACRYGT	1 cut(s)	348
AjiI	CACGTC	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	2 cut(s)	67, 236
AluI	AGCT	2 cut(s)	67, 236
Alw26I	GTCTC	3 cut(s)	63, 314, 346
AoxI	GGCC	2 cut(s)	87, 246
ApoI	RAATTY	1 cut(s)	241
AspS9I	GGNCC	2 cut(s)	211, 247
AsuC2I	CCSGG	2 cut(s)	123, 186
AvaII	GGWCC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	27
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	1 cut(s)	74
BcnI	CCSGG	2 cut(s)	123, 186
BcoDI	GTCTC	3 cut(s)	63, 314, 346
BfmI	CTRYAG	1 cut(s)	291
BfrI	CTTAAG	1 cut(s)	206
BlpI	GCTNAGC	2 cut(s)	68, 114
Bme1390I	CCNGG	3 cut(s)	74, 123, 186
Bme18I	GGWCC	1 cut(s)	211
BmgBI	CACGTC	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	211, 247
BmiI	GGNNCC	2 cut(s)	6, 213
BmrFI	CCNGG	3 cut(s)	74, 123, 186
BmsI	GCATC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	83
Bpu1102I	GCTNAGC	2 cut(s)	68, 114
BpuMI	CCSGG	2 cut(s)	123, 186
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse118I	RCCGGY	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	2 cut(s)	59, 128
BseRI	GAGGAG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	89, 248
BsiSI	CCGG	3 cut(s)	110, 123, 186
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	3 cut(s)	63, 314, 346
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	89, 248
Bso31I	GGTCTC	1 cut(s)	314
Bsp1720I	GCTNAGC	2 cut(s)	68, 114
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	2 cut(s)	89, 248
BspCNI	CTCAG	2 cut(s)	60, 127
BspLI	GGNNCC	2 cut(s)	6, 213
BspTI	CTTAAG	1 cut(s)	206
BspTNI	GGTCTC	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	308
BstAFI	CTTAAG	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	3 cut(s)	68, 114, 155
BstMAI	GTCTC	3 cut(s)	63, 314, 346
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 132, 254, 293
BstNI	CCWGG	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	3 cut(s)	72, 121, 184
BstSFI	CTRYAG	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	89, 248
BtrI	CACGTC	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	111
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	2 cut(s)	211, 247
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	8 cut(s)	5, 67, 72, 89, 113, 179, 236, 248
CviKI_1	RGCY	8 cut(s)	5, 67, 72, 89, 113, 179, 236, 248
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	3 cut(s)	68, 114, 155
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	250
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	1 cut(s)	352
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	1 cut(s)	348
FauI	CCCGC	1 cut(s)	227
FblI	GTMKAC	2 cut(s)	171, 330
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	89, 248
HapII	CCGG	3 cut(s)	110, 123, 186
Hin1II	CATG	1 cut(s)	352
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	6 cut(s)	56, 80, 99, 128, 168, 189
HpaII	CCGG	3 cut(s)	110, 123, 186
Hpy166II	GTNNAC	2 cut(s)	172, 331
Hpy188I	TCNGA	3 cut(s)	9, 85, 167
Hpy188III	TCNNGA	2 cut(s)	62, 96
Hpy8I	GTNNAC	2 cut(s)	172, 331
Hpy99I	CGWCG	2 cut(s)	107, 197
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	257, 263
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 132, 254, 293
HpyF3I	CTNAG	3 cut(s)	68, 114, 155
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	352
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
LmnI	GCTCC	2 cut(s)	10, 64
LpnPI	CCDG	7 cut(s)	47, 59, 86, 123, 136, 199, 222
LweI	GCATC	1 cut(s)	171
MaeII	ACGT	1 cut(s)	30
MboII	GAAGA	1 cut(s)	32
MfeI	CAATTG	1 cut(s)	258
MluCI	AATT	2 cut(s)	241, 258
MlyI	GAGTC	4 cut(s)	65, 89, 137, 177
MnlI	CCTC	6 cut(s)	8, 19, 79, 152, 225, 233
MroNI	GCCGGC	1 cut(s)	109
MseI	TTAA	1 cut(s)	207
MspCI	CTTAAG	1 cut(s)	206
MspI	CCGG	3 cut(s)	110, 123, 186
MspR9I	CCNGG	3 cut(s)	74, 123, 186
MunI	CAATTG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	4 cut(s)	115, 132, 254, 293
NaeI	GCCGGC	1 cut(s)	111
NciI	CCSGG	2 cut(s)	123, 186
NgoMIV	GCCGGC	1 cut(s)	109
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	2 cut(s)	6, 213
NspI	RCATGY	1 cut(s)	352
PciI	ACATGT	1 cut(s)	348
PdiI	GCCGGC	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	99, 189
PleI	GAGTC	4 cut(s)	64, 88, 136, 176
PpsI	GAGTC	4 cut(s)	64, 88, 136, 176
PpuMI	RGGWCCY	1 cut(s)	211
PscI	ACATGT	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	6, 213
PspPI	GGNCC	2 cut(s)	211, 247
PspPPI	RGGWCCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
SalI	GTCGAC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	207
Sau96I	GGNCC	2 cut(s)	211, 247
SchI	GAGTC	4 cut(s)	65, 89, 137, 177
ScrFI	CCNGG	3 cut(s)	74, 123, 186
SetI	ASST	6 cut(s)	33, 69, 213, 238, 256, 270
SfaNI	GCATC	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	241, 258
SsiI	CCGC	1 cut(s)	220
StyD4I	CCNGG	3 cut(s)	72, 121, 184
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	3 cut(s)	95, 131, 171
TasI	AATT	2 cut(s)	241, 258
TatI	WGTACW	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	99, 189
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	53, 332
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	1 cut(s)	232
Vha464I	CTTAAG	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	241
XceI	RCATGY	1 cut(s)	352
XmiI	GTMKAC	2 cut(s)	171, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.