Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004950

Physical Location & Seq

Genomic Coordinates Reverse (-)

1156933 .. 1169822

Gene Structure 12890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG008200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2490 bp

ATGTTCACCAAATGGCACAAAAATGCTGTTCTCGTTAGTCCTTACGGTGTTGAGCGCTGGTATTTTCGCGGTGGCTTGATGTTGGGCCCAACTTGGATATGCGGTTTCTGCTGTCTGGGTGAGCTGGTGAGGAGCGGCATTTTGGTGAAGGATCAACGATTGAGGGACTTAACACTATCAATTGGTCTTCTGCCATTGGTGTTACCCATCTGTAATTGGGCTTGGGTTCGATGCATGAGAAGTTGCAGTCCCATTCAGATTCAGGCAACGATTGAAGCAGAGAGAGCCTGCAGTGAGCAATCACACATATTTTTAGATGGTGGCGGAGCTGGATCTGCAAACCACCTGAAGTTGTTAATCCACATGGCTCATCTTGCAACCAACAACACACAGGGTCACTCTTATGATGAGAATAATGATGCCCAGAAAAATGTATTTGATTTGGGTGCATTTGTTGGAGACTTGACTGTTGAGGAGGATGCTAGCAGTGATGACATATCGTTGGAAGGACTGCAACAAGAATTAGAAGAATGTAAACAAGATGACGTAGTTGCAAATATATTGTCTAAGGGTACGAAACTACGGGACTATACAAAGGGGGTTGAGAACAACATACGACAAGTTGAACTAGACTCGATCCAGGATTATATTAAAGAAAGTGATAATCTAGTATCTCTTCATGATCAAATTCGTGATTGTGACAGCATATTGTCACAGATGGAAACTCTTCTCAGTGGATTTCAGGCAGAGATAGGTTCAATAAGTTCTGACATCAAAGTTCTCCAGGAGAAGTCTATGGATATGGGTTTAAAGTTGAAGAATCGCAAGGTGGCAGAGTCAAAATTGGCAAAATTTGTTGAAGACATTATAGTCCCTCCAAGGATGGTAGATATAATTGTTGATGGCGAGGTGAATGATGAATATATGAGAACTCTAGAGATTCTTAGCAAGAAGCTGAAGTTTGTTGAAGTGGATCTTATGGTTAAAACTGCCAAAGCTCTAAAAGATGTTCAGCCTGAGCTTGAAAAACTTAGACAAAAAGCAGTTTCCAAGGTGTTTGACTTCATTGTTCAGAAGCTTTATGCATTGAGAAAACCAAAAACAAATATCCAGATCCTTCAACAGAATGTTCTCTTAAAGTACAAGTATGTTATTTCATTCCTCAAGGAACACGGAAAGGAGGTATACATTGAGGTTCGTGGAGCATACATCGACACAATGAACAAGGTTCTAAGTGCACATTTCCGTGCTTATATTCAGGCACTTGAGAAACTACAGTTGGATATTGCCACATCTAGTGACTTAATTGGTGTGGAGACGAGAAATACAAGTCTATTTTCAAGAGGAAGGGAACCACTGAAGAACCGGTCGGCTGTTTTTGCTCTCGGAGAGAGGATTAAAATTTTGAAGGAAATTGAAGAACCTGCATTAATTCCACATATAGCTGAAGCCAGCTCTATCAAGTATCCGTATGAGGTGCTCTTCAGGAGCTTGCACAAGCTGCTTATGGACACTGCTACTTCTGAGTACCATTTCTGCGATGATTTCTTTTGCGAAGAATCCATATTTTATGAAATTTTTGCAGGTCCATTTGCTGTAATTGATGAACACTTCAATTCAATACTTCCAAATTGTTATGATGCTATTGGTGTAATGCTTATGATCCGCATTATACACCAGCACCAGCTCATCATGTCTCGGCGGCGTATCCCATGCTTGGATTCATACTTAGACAAGGTCAATATCGCCCTTTGGCCTCGTTTTAAGATGGTGTTTGACCTGCATCTCAACAGCCTGCGCAATGCGAATGTGAAGACATTGTGGGAAGATGATGTTCATCCTCACTACGTCATGAGGCGATATGCTGAATTCACAGCTTCACTTATCCACCTCAATGTTGAATATGGAGATGGGCAGCTTGAATTGAATTTGGAAAGACTGAGAATGGCTGTTGATGACTTGCTTATCAAGCTTGCTAAAGCATTTCCAAGACCAAAACTGCAAACTGTGTTTCTGATAAACAACTACGATATGACTATTGCAGTGCTGAAGGAAGCTGGTCCAGAAGGTGGTAAAATTCAAATCCACTTTGAGGAACTGCTGAAAAGCAACACAGCATTATTTGTGGAAGAACTATTACTAGAGCATTTTAGTGATTTAATCAAGTTTGTCAAAACCCGGGCTTCGGAGGACCCGGGTGCTAATGTTGAGAATCCTGTAACTGGCACGGAGGTTGAGCCACTTGTGAAGGACTTTGCAAGTAGATGGAAAGCTGCAATTGAGCTGATGCACAAGGATGTCATAACTTCTTTCAGCAACTTCTTGTGTGGTATGGAAATCTTGAGGGCAGCATTGACTCAGCTACTGCTTTATTATACTAGGCTCTCCGATTGCATAAAGAGGATTGTCGGTGGGTCTACTCTTAACAAGGATCTGGTGTCCATATCCTCAATCATGTATGAAATTAAGAAATACTCGAGGACTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000149 GO:0000902 GO:0000904 GO:0000938 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0007034 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016197 GO:0016482 GO:0017016 GO:0017137 GO:0019899 GO:0019905 GO:0019953 GO:0022414 GO:0030154 GO:0031090 GO:0031267 GO:0031410 GO:0031982 GO:0031984 GO:0032456 GO:0032501 GO:0032502 GO:0032588 GO:0032989 GO:0032991 GO:0040007 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046907 GO:0048193 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051020 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0060560 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps52

Protein Analysis

829

Amino Acids

94.56

Weight (kDa)

5.94

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec3_CC	PF09763	198 - 309	1.4e-06	Exocyst complex component Sec3, coiled-coil
Vps52_CC	PF04129	215 - 388	4.7e-66	Vps52/Sac2 family, coiled-coil
Vps52_C	PF20655	405 - 709	5e-129	Vps52, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71270 AT1G71300 AT1G71300
fragaria_vesca	FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140 FvH4_2g00140
malus_domestica	MD08G1244900.v1.1 MD15G1440000.v1.1
prunus_persica	Prupe.1G566400_v2.0.a1 Prupe.1G566400_v2.0.a1 Prupe.1G566400_v2.0.a1
pyrus_communis	pycom08g21240 pycom15g38790
rosa_chinensis	RchiOBHm_Chr6g0249411
rosa_laevigata	RLG00000015582
rosa_multiflora	Rmu_sc0000278.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217740
rosa_rugosa	Rorug05G0492100
rosa_samantha	Rh6AG002000 Rh6BG008200 Rh6CG001100 Rh6DG001200
rosa_wichuraiana	Rw6G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	869
Acc16I	TGCGCA	1 cut(s)	1799
Acc36I	ACCTGC	3 cut(s)	1432, 1574, 1788
AccB7I	CCANNNNNTGG	1 cut(s)	2069
AccBSI	CCGCTC	1 cut(s)	135
AccI	GTMKAC	2 cut(s)	1185, 2417
AccII	CGCG	1 cut(s)	69
AciI	CCGC	6 cut(s)	69, 102, 135, 324, 1666, 1702
AclWI	GGATC	7 cut(s)	159, 340, 631, 981, 1108, 1657, 2439
AcsI	RAATTY	7 cut(s)	687, 851, 1401, 1575, 1868, 1927, 2076
AcuI	CTGAAG	6 cut(s)	368, 977, 1379, 1467, 1468, 2069
AfaI	GTAC	3 cut(s)	574, 1142, 1529
AfeI	AGCGCT	1 cut(s)	56
AfiI	CCNNNNNNNGG	5 cut(s)	1717, 2069, 2092, 2185, 2222
AgeI	ACCGGT	1 cut(s)	1365
AjnI	CCWGG	2 cut(s)	639, 783
AjuI	GAANNNNNNNTTGG	2 cut(s)	1262, 1294
Alw21I	GWGCWC	2 cut(s)	1240, 1482
Alw26I	GTCTC	3 cut(s)	453, 1310, 1701
Alw44I	GTGCAC	1 cut(s)	1236
AlwI	GGATC	7 cut(s)	159, 340, 631, 981, 1108, 1657, 2439
AlwNI	CAGNNNCTG	1 cut(s)	2365
Ama87I	CYCGRG	3 cut(s)	2178, 2194, 2476
Aor51HI	AGCGCT	1 cut(s)	56
AoxI	GGCC	2 cut(s)	85, 1754
ApaI	GGGCCC	1 cut(s)	89
ApaLI	GTGCAC	1 cut(s)	1236
ApeKI	GCWGC	4 cut(s)	1501, 1915, 2273, 2348
ApoI	RAATTY	7 cut(s)	687, 851, 1401, 1575, 1868, 1927, 2076
ArsI	GACNNNNNNTTYG	2 cut(s)	548, 580
AseI	ATTAAT	1 cut(s)	1430
AsiGI	ACCGGT	1 cut(s)	1365
Asp700I	GAANNNNTTC	1 cut(s)	726
AspLEI	GCGC	2 cut(s)	57, 1800
AspS9I	GGNCC	5 cut(s)	85, 86, 1586, 2060, 2191
AsuC2I	CCSGG	4 cut(s)	2179, 2180, 2195, 2196
AsuHPI	GGTGA	4 cut(s)	131, 139, 157, 922
AsuNHI	GCTAGC	1 cut(s)	482
AvaI	CYCGRG	3 cut(s)	2178, 2194, 2476
AvaII	GGWCC	3 cut(s)	1586, 2060, 2191
BaeGI	GKGCMC	2 cut(s)	89, 1240
BanII	GRGCYC	1 cut(s)	89
BarI	GAAGNNNNNNTAC	2 cut(s)	2121, 2153
BbsI	GAAGAC	3 cut(s)	179, 867, 1820
Bbv12I	GWGCWC	2 cut(s)	1240, 1482
BbvI	GCAGC	4 cut(s)	1488, 1927, 2260, 2360
BccI	CCATC	8 cut(s)	215, 311, 712, 877, 896, 1762, 1904, 2259
BciT130I	CCWGG	2 cut(s)	641, 785
BciVI	GTATCC	2 cut(s)	1476, 1718
BclI	TGATCA	1 cut(s)	682
BcnI	CCSGG	4 cut(s)	2179, 2180, 2195, 2196
BcoDI	GTCTC	3 cut(s)	453, 1310, 1701
BfaI	CTAG	7 cut(s)	483, 629, 668, 935, 1296, 2141, 2379
BfmI	CTRYAG	2 cut(s)	289, 1274
BfoI	RGCGCY	1 cut(s)	58
BfuAI	ACCTGC	3 cut(s)	1432, 1574, 1788
BfuI	GTATCC	2 cut(s)	1476, 1718
BisI	GCNGC	6 cut(s)	136, 1502, 1703, 1916, 2274, 2349
BlsI	GCNGC	6 cut(s)	137, 1503, 1704, 1917, 2275, 2350
Bme1390I	CCNGG	6 cut(s)	641, 785, 2179, 2180, 2195, 2196
Bme18I	GGWCC	3 cut(s)	1586, 2060, 2191
BmeT110I	CYCGRG	3 cut(s)	2178, 2194, 2476
BmgT120I	GGNCC	5 cut(s)	85, 86, 1586, 2060, 2191
BmiI	GGNNCC	3 cut(s)	87, 1353, 2193
BmrFI	CCNGG	6 cut(s)	641, 785, 2179, 2180, 2195, 2196
BmsI	GCATC	6 cut(s)	221, 409, 469, 1630, 1792, 2277
BmtI	GCTAGC	1 cut(s)	486
BpiI	GAAGAC	3 cut(s)	179, 867, 1820
BpmI	CTGGAG	1 cut(s)	767
Bpu10I	CCTNAGC	1 cut(s)	1017
BpuEI	CTTGAG	3 cut(s)	1148, 1286, 2362
BpuMI	CCSGG	4 cut(s)	2179, 2180, 2195, 2196
BsaBI	GATNNNNATC	1 cut(s)	1836
BsaJI	CCNNGG	4 cut(s)	878, 1050, 2178, 2194
BsaWI	WCCGGW	1 cut(s)	1365
Bsc4I	CCNNNNNNNGG	5 cut(s)	1717, 2069, 2092, 2185, 2222
Bse118I	RCCGGY	1 cut(s)	1365
Bse1I	ACTGG	1 cut(s)	2227
Bse3DI	GCAATG	1 cut(s)	1807
Bse8I	GATNNNNATC	1 cut(s)	1836
BseBI	CCWGG	2 cut(s)	641, 785
BseDI	CCNNGG	4 cut(s)	878, 1050, 2178, 2194
BseGI	GGATG	4 cut(s)	484, 888, 1837, 2302
BseJI	GATNNNNATC	1 cut(s)	1836
BseLI	CCNNNNNNNGG	5 cut(s)	1717, 2069, 2092, 2185, 2222
BseMI	GCAATG	1 cut(s)	1807
BseMII	CTCAG	5 cut(s)	745, 1008, 1515, 1931, 2372
BseNI	ACTGG	1 cut(s)	2227
BseRI	GAGGAG	2 cut(s)	145, 488
BseSI	GKGCMC	2 cut(s)	89, 1240
BseXI	GCAGC	4 cut(s)	1488, 1927, 2260, 2360
Bsh1236I	CGCG	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	1370
BshFI	GGCC	2 cut(s)	87, 1756
BshTI	ACCGGT	1 cut(s)	1365
BsiEI	CGRYCG	1 cut(s)	1370
BsiHKAI	GWGCWC	2 cut(s)	1240, 1482
BsiHKCI	CYCGRG	3 cut(s)	2178, 2194, 2476
BsiSI	CCGG	3 cut(s)	1366, 2179, 2195
BslFI	GGGAC	4 cut(s)	179, 234, 599, 857
BslI	CCNNNNNNNGG	5 cut(s)	1717, 2069, 2092, 2185, 2222
BsmAI	GTCTC	3 cut(s)	453, 1310, 1701
BsmBI	CGTCTC	1 cut(s)	1310
BsmFI	GGGAC	4 cut(s)	179, 234, 599, 857
BsnI	GGCC	2 cut(s)	87, 1756
BsoBI	CYCGRG	3 cut(s)	2178, 2194, 2476
Bsp120I	GGGCCC	1 cut(s)	85
Bsp1286I	GDGCHC	3 cut(s)	89, 1240, 1482
Bsp143I	GATC	8 cut(s)	151, 332, 636, 682, 973, 1113, 1662, 2431
BspACI	CCGC	6 cut(s)	69, 102, 135, 324, 1666, 1702
BspANI	GGCC	2 cut(s)	87, 1756
BspCNI	CTCAG	5 cut(s)	744, 1009, 1516, 1932, 2371
BspFNI	CGCG	1 cut(s)	69
BspHI	TCATGA	2 cut(s)	679, 1851
BspLI	GGNNCC	3 cut(s)	87, 1353, 2193
BspMAI	CTGCAG	1 cut(s)	293
BspMI	ACCTGC	3 cut(s)	1432, 1574, 1788
BspOI	GCTAGC	1 cut(s)	486
BspPI	GGATC	7 cut(s)	159, 340, 631, 981, 1108, 1657, 2439
BspQI	GCTCTTC	1 cut(s)	1487
BsrBI	CCGCTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	1807
BsrFI	RCCGGY	1 cut(s)	1365
BsrI	ACTGG	1 cut(s)	2227
BssAI	RCCGGY	1 cut(s)	1365
BssECI	CCNNGG	4 cut(s)	878, 1050, 2178, 2194
BssMI	GATC	8 cut(s)	151, 332, 636, 682, 973, 1113, 1662, 2431
BssNAI	GTATAC	1 cut(s)	1186
BssT1I	CCWWGG	2 cut(s)	878, 1050
Bst1107I	GTATAC	1 cut(s)	1186
Bst2UI	CCWGG	2 cut(s)	641, 785
Bst4CI	ACNGT	4 cut(s)	47, 469, 1278, 2008
Bst6I	CTCTTC	3 cut(s)	681, 732, 1487
BstAPI	GCANNNNNTGC	1 cut(s)	1501
BstC8I	GCNNGC	6 cut(s)	289, 484, 1453, 1493, 1796, 1974
BstF5I	GGATG	4 cut(s)	484, 888, 1837, 2302
BstFNI	CGCG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	2 cut(s)	57, 1800
BstKTI	GATC	8 cut(s)	154, 335, 639, 685, 976, 1116, 1665, 2434
BstMAI	GTCTC	3 cut(s)	453, 1310, 1701
BstMBI	GATC	8 cut(s)	151, 332, 636, 682, 973, 1113, 1662, 2431
BstMCI	CGRYCG	1 cut(s)	1370
BstMWI	GCNNNNNNNGC	7 cut(s)	108, 284, 335, 374, 1379, 1501, 1969
BstNI	CCWGG	2 cut(s)	641, 785
BstSCI	CCNGG	6 cut(s)	639, 783, 2177, 2178, 2193, 2194
BstSFI	CTRYAG	2 cut(s)	289, 1274
BstSLI	GKGCMC	2 cut(s)	89, 1240
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	4 cut(s)	1488, 1927, 2260, 2360
BstV2I	GAAGAC	3 cut(s)	179, 867, 1820
BstX2I	RGATCY	4 cut(s)	332, 973, 1113, 2431
BstYI	RGATCY	4 cut(s)	332, 973, 1113, 2431
BstZ17I	GTATAC	1 cut(s)	1186
BsuI	GTATCC	2 cut(s)	1476, 1718
BsuRI	GGCC	2 cut(s)	87, 1756
BtgZI	GCGATG	1 cut(s)	1554
BtsCI	GGATG	4 cut(s)	484, 888, 1837, 2302
BtsI	GCAGTG	4 cut(s)	298, 493, 1512, 2049
BtsIMutI	CAGTG	6 cut(s)	298, 493, 739, 1355, 1512, 2049
BveI	ACCTGC	3 cut(s)	1432, 1574, 1788
Cac8I	GCNNGC	6 cut(s)	289, 484, 1453, 1493, 1796, 1974
CaiI	CAGNNNCTG	1 cut(s)	2365
CciI	TCATGA	2 cut(s)	679, 1851
CfoI	GCGC	2 cut(s)	57, 1800
Cfr10I	RCCGGY	1 cut(s)	1365
Cfr13I	GGNCC	5 cut(s)	85, 86, 1586, 2060, 2191
Cfr9I	CCCGGG	2 cut(s)	2178, 2194
Csp6I	GTAC	3 cut(s)	573, 1141, 1528
CspAI	ACCGGT	1 cut(s)	1365
CviAII	CATG	7 cut(s)	235, 364, 680, 1693, 1713, 1852, 2455
CviQI	GTAC	3 cut(s)	573, 1141, 1528
DpnI	GATC	8 cut(s)	153, 334, 638, 684, 975, 1115, 1664, 2433
DpnII	GATC	8 cut(s)	151, 332, 636, 682, 973, 1113, 1662, 2431
DraI	TTTAAA	1 cut(s)	810
DrdI	GACNNNNNNGTC	1 cut(s)	869
DseDI	GACNNNNNNGTC	1 cut(s)	869
Eam1104I	CTCTTC	3 cut(s)	681, 732, 1487
EarI	CTCTTC	3 cut(s)	681, 732, 1487
EciI	GGCGGA	1 cut(s)	339
Eco130I	CCWWGG	2 cut(s)	878, 1050
Eco24I	GRGCYC	1 cut(s)	89
Eco47I	GGWCC	3 cut(s)	1586, 2060, 2191
Eco47III	AGCGCT	1 cut(s)	56
Eco57I	CTGAAG	6 cut(s)	368, 977, 1379, 1467, 1468, 2069
Eco88I	CYCGRG	3 cut(s)	2178, 2194, 2476
EcoO109I	RGGNCCY	1 cut(s)	2191
EcoRI	GAATTC	1 cut(s)	1868
EcoRII	CCWGG	2 cut(s)	639, 783
EcoT14I	CCWWGG	2 cut(s)	878, 1050
EcoT22I	ATGCAT	2 cut(s)	236, 1087
EcoT38I	GRGCYC	1 cut(s)	89
ErhI	CCWWGG	2 cut(s)	878, 1050
Esp3I	CGTCTC	1 cut(s)	1310
FaeI	CATG	7 cut(s)	238, 367, 683, 1696, 1716, 1855, 2458
FalI	AAGNNNNNCTT	2 cut(s)	960, 992
FaqI	GGGAC	4 cut(s)	179, 234, 599, 857
FatI	CATG	7 cut(s)	234, 363, 679, 1692, 1712, 1851, 2454
FbaI	TGATCA	1 cut(s)	682
FblI	GTMKAC	2 cut(s)	1185, 2417
Fnu4HI	GCNGC	6 cut(s)	136, 1502, 1703, 1916, 2274, 2349
FokI	GGATG	4 cut(s)	491, 895, 1824, 2309
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	6 cut(s)	136, 1502, 1703, 1916, 2274, 2349
FspBI	CTAG	7 cut(s)	483, 629, 668, 935, 1296, 2141, 2379
FspI	TGCGCA	1 cut(s)	1799
GlaI	GCGC	2 cut(s)	56, 1799
GluI	GCNGC	6 cut(s)	136, 1502, 1703, 1916, 2274, 2349
GsuI	CTGGAG	1 cut(s)	767
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	87, 1756
HapII	CCGG	3 cut(s)	1366, 2179, 2195
HhaI	GCGC	2 cut(s)	57, 1800
Hin1II	CATG	7 cut(s)	238, 367, 683, 1696, 1716, 1855, 2458
Hin6I	GCGC	2 cut(s)	55, 1798
HinP1I	GCGC	2 cut(s)	55, 1798
HindIII	AAGCTT	2 cut(s)	1076, 1970
HinfI	GANTC	9 cut(s)	259, 632, 820, 836, 940, 1559, 1721, 2212, 2356
HpaII	CCGG	3 cut(s)	1366, 2179, 2195
HphI	GGTGA	4 cut(s)	131, 139, 157, 922
Hpy166II	GTNNAC	5 cut(s)	6, 536, 1186, 1238, 2418
Hpy188I	TCNGA	8 cut(s)	258, 769, 1074, 1388, 1525, 2016, 2188, 2389
Hpy188III	TCNNGA	9 cut(s)	680, 692, 935, 1111, 1341, 1486, 1852, 2063, 2341
Hpy8I	GTNNAC	5 cut(s)	6, 536, 1186, 1238, 2418
HpyAV	CCTTC	8 cut(s)	142, 500, 1127, 1341, 1402, 2044, 2060, 2242
HpyCH4III	ACNGT	4 cut(s)	47, 469, 1278, 2008
HpyCH4IV	ACGT	2 cut(s)	546, 1848
HpyF10VI	GCNNNNNNNGC	7 cut(s)	108, 284, 335, 374, 1379, 1501, 1969
HpySE526I	ACGT	2 cut(s)	546, 1848
Hsp92II	CATG	7 cut(s)	238, 367, 683, 1696, 1716, 1855, 2458
HspAI	GCGC	2 cut(s)	55, 1798
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	8 cut(s)	151, 332, 636, 682, 973, 1113, 1662, 2431
LguI	GCTCTTC	1 cut(s)	1487
LmnI	GCTCC	4 cut(s)	132, 326, 1202, 1488
Lsp1109I	GCAGC	4 cut(s)	1488, 1927, 2260, 2360
LweI	GCATC	6 cut(s)	221, 409, 469, 1630, 1792, 2277
MaeI	CTAG	7 cut(s)	483, 629, 668, 935, 1296, 2141, 2379
MaeII	ACGT	2 cut(s)	546, 1848
MaeIII	GTNAC	6 cut(s)	201, 395, 698, 711, 1298, 2218
MalI	GATC	8 cut(s)	153, 334, 638, 684, 975, 1115, 1664, 2433
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	8 cut(s)	151, 332, 636, 682, 973, 1113, 1662, 2431
MfeI	CAATTG	2 cut(s)	180, 2277
MflI	RGATCY	4 cut(s)	332, 973, 1113, 2431
MhlI	GDGCHC	3 cut(s)	89, 1240, 1482
MlyI	GAGTC	3 cut(s)	626, 845, 2350
MmeI	TCCRAC	3 cut(s)	436, 483, 1260
Mph1103I	ATGCAT	2 cut(s)	236, 1087
MroXI	GAANNNNTTC	1 cut(s)	726
MslI	CAYNNNNRTG	7 cut(s)	21, 143, 402, 1245, 1893, 2151, 2295
MspI	CCGG	3 cut(s)	1366, 2179, 2195
MspR9I	CCNGG	6 cut(s)	641, 785, 2179, 2180, 2195, 2196
MunI	CAATTG	2 cut(s)	180, 2277
MvaI	CCWGG	2 cut(s)	641, 785
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	7 cut(s)	108, 284, 335, 374, 1379, 1501, 1969
NciI	CCSGG	4 cut(s)	2179, 2180, 2195, 2196
NdeII	GATC	8 cut(s)	151, 332, 636, 682, 973, 1113, 1662, 2431
NheI	GCTAGC	1 cut(s)	482
NlaIII	CATG	7 cut(s)	238, 367, 683, 1696, 1716, 1855, 2458
NlaIV	GGNNCC	3 cut(s)	87, 1353, 2193
NmeAIII	GCCGAG	1 cut(s)	1678
NmuCI	GTSAC	4 cut(s)	395, 698, 711, 1298
NsbI	TGCGCA	1 cut(s)	1799
NsiI	ATGCAT	2 cut(s)	236, 1087
PaeR7I	CTCGAG	1 cut(s)	2476
PagI	TCATGA	2 cut(s)	679, 1851
PciSI	GCTCTTC	1 cut(s)	1487
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	6 cut(s)	259, 820, 940, 1559, 1721, 2212
PflFI	GACNNNGTC	1 cut(s)	1736
PflMI	CCANNNNNTGG	1 cut(s)	2069
PfoI	TCCNGGA	2 cut(s)	639, 783
PinAI	ACCGGT	1 cut(s)	1365
PkrI	GCNGC	6 cut(s)	137, 1503, 1704, 1917, 2275, 2350
PleI	GAGTC	3 cut(s)	626, 844, 2350
PpsI	GAGTC	3 cut(s)	626, 844, 2350
PpuMI	RGGWCCY	1 cut(s)	2191
PshBI	ATTAAT	1 cut(s)	1430
Psp5II	RGGWCCY	1 cut(s)	2191
Psp6I	CCWGG	2 cut(s)	639, 783
PspGI	CCWGG	2 cut(s)	639, 783
PspN4I	GGNNCC	3 cut(s)	87, 1353, 2193
PspOMI	GGGCCC	1 cut(s)	85
PspPI	GGNCC	5 cut(s)	85, 86, 1586, 2060, 2191
PspPPI	RGGWCCY	1 cut(s)	2191
PspXI	VCTCGAGB	1 cut(s)	2476
PstI	CTGCAG	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	2365
PsuI	RGATCY	4 cut(s)	332, 973, 1113, 2431
PsyI	GACNNNGTC	1 cut(s)	1736
RsaI	GTAC	3 cut(s)	574, 1142, 1529
RsaNI	GTAC	3 cut(s)	573, 1141, 1528
RseI	CAYNNNNRTG	7 cut(s)	21, 143, 402, 1245, 1893, 2151, 2295
SapI	GCTCTTC	1 cut(s)	1487
SatI	GCNGC	6 cut(s)	136, 1502, 1703, 1916, 2274, 2349
Sau3AI	GATC	8 cut(s)	151, 332, 636, 682, 973, 1113, 1662, 2431
Sau96I	GGNCC	5 cut(s)	85, 86, 1586, 2060, 2191
SchI	GAGTC	3 cut(s)	626, 845, 2350
ScrFI	CCNGG	6 cut(s)	641, 785, 2179, 2180, 2195, 2196
SduI	GDGCHC	3 cut(s)	89, 1240, 1482
SfaNI	GCATC	6 cut(s)	221, 409, 469, 1630, 1792, 2277
SfcI	CTRYAG	2 cut(s)	289, 1274
Sfr274I	CTCGAG	1 cut(s)	2476
SinI	GGWCC	3 cut(s)	1586, 2060, 2191
SlaI	CTCGAG	1 cut(s)	2476
SmaI	CCCGGG	2 cut(s)	2180, 2196
SmiMI	CAYNNNNRTG	7 cut(s)	21, 143, 402, 1245, 1893, 2151, 2295
SmlI	CTYRAG	4 cut(s)	1163, 1265, 2341, 2476
SmoI	CTYRAG	4 cut(s)	1163, 1265, 2341, 2476
SsiI	CCGC	6 cut(s)	69, 102, 135, 324, 1666, 1702
SspMI	CTAG	7 cut(s)	483, 629, 668, 935, 1296, 2141, 2379
StyD4I	CCNGG	6 cut(s)	639, 783, 2177, 2178, 2193, 2194
StyI	CCWWGG	2 cut(s)	878, 1050
TaaI	ACNGT	4 cut(s)	47, 469, 1278, 2008
TaiI	ACGT	2 cut(s)	549, 1851
TaqI	TCGA	4 cut(s)	229, 635, 1212, 2477
TatI	WGTACW	1 cut(s)	1140
TauI	GCSGC	2 cut(s)	138, 1705
TfiI	GAWTC	6 cut(s)	259, 820, 940, 1559, 1721, 2212
TscAI	CASTG	6 cut(s)	298, 493, 739, 1362, 1519, 2049
TseFI	GTSAC	4 cut(s)	395, 698, 711, 1298
TseI	GCWGC	4 cut(s)	1501, 1915, 2273, 2348
Tsp45I	GTSAC	4 cut(s)	395, 698, 711, 1298
TspGWI	ACGGA	4 cut(s)	1188, 1235, 1458, 2243
TspMI	CCCGGG	2 cut(s)	2178, 2194
TspRI	CASTG	6 cut(s)	298, 493, 739, 1362, 1519, 2049
Tth111I	GACNNNGTC	1 cut(s)	1736
Van91I	CCANNNNNTGG	1 cut(s)	2069
VneI	GTGCAC	1 cut(s)	1236
VpaK11BI	GGWCC	3 cut(s)	1586, 2060, 2191
VspI	ATTAAT	1 cut(s)	1430
XapI	RAATTY	7 cut(s)	687, 851, 1401, 1575, 1868, 1927, 2076
XbaI	TCTAGA	1 cut(s)	934
XhoI	CTCGAG	1 cut(s)	2476
XmaI	CCCGGG	2 cut(s)	2178, 2194
XmiI	GTMKAC	2 cut(s)	1185, 2417
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	7 cut(s)	483, 629, 668, 935, 1296, 2141, 2379
Zsp2I	ATGCAT	2 cut(s)	236, 1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.