pycom15g39280

SNARE associated Golgi protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0005719
Physical Location & Seq
Reverse (-)
39167612 .. 39167923
312 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGATGACAAACTCCTTGGAAGAGTTAGGGAAGCATCCAACCTCAGTGCATTATGTTAGAGAAGACAGTGAGTATGTTAGGCTGGTTGTATCCAATGAAACAAGGCCGGCAGAAGCTGATATCTTGCAGCCTCAATCAGAAACAAGGGTTAAATCTTTCTTGTGGTGGATTAGAGCCTTAGCTTGGTGCCTTGTTATCATTATATTGCTCCTCATTTTCTTAAAATGGGGAATGCCGTTTCTTTTCGAAAAGGTCCTTCCTTTTACTCCTCTTTCATTAGTTCTTCTTATAGATCATGTTATAGTTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

104

Amino Acids

12.04

Weight (kDa)

6.04

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 183
AluBI AGCT 2 cut(s) 116, 182
AluI AGCT 2 cut(s) 116, 182
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 253
AsuII TTCGAA 1 cut(s) 246
AvaII GGWCC 1 cut(s) 253
BanI GGYRCC 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 220
BciVI GTATCC 1 cut(s) 100
BfaI CTAG 1 cut(s) 310
BfuI GTATCC 1 cut(s) 100
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 188
BmsI GCATC 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 178
Bpu14I TTCGAA 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse118I RCCGGY 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 57
BseRI GAGGAG 2 cut(s) 200, 258
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 106
BshNI GGYRCC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 183
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 1 cut(s) 106
Bsp119I TTCGAA 1 cut(s) 246
Bsp143I GATC 1 cut(s) 292
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 188
BspT104I TTCGAA 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 1 cut(s) 292
BssT1I CCWWGG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 15
BstBI TTCGAA 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 43, 178
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 69
BsuI GTATCC 1 cut(s) 100
BsuRI GGCC 1 cut(s) 106
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 2 cut(s) 51, 73
Cac8I GCNNGC 1 cut(s) 108
CaiI CAGNNNCTG 1 cut(s) 116
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 253
CviAII CATG 1 cut(s) 296
CviJI RGCY 6 cut(s) 82, 106, 116, 130, 176, 182
CviKI_1 RGCY 6 cut(s) 82, 106, 116, 130, 176, 182
DdeI CTNAG 2 cut(s) 43, 178
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 15
Eco32I GATATC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 253
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 1 cut(s) 299
FaiI YATR 6 cut(s) 54, 75, 203, 290, 297, 302
FatI CATG 1 cut(s) 295
Fnu4HI GCNGC 1 cut(s) 128
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 128
FspBI CTAG 1 cut(s) 310
GluI GCNGC 1 cut(s) 128
HaeIII GGCC 1 cut(s) 106
HapII CCGG 1 cut(s) 107
Hin1II CATG 1 cut(s) 299
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 1 cut(s) 139
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 49, 127
HpyF3I CTNAG 2 cut(s) 43, 178
Hsp92II CATG 1 cut(s) 299
KroI GCCGGC 1 cut(s) 106
KroNI GCCGGC 1 cut(s) 108
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 2 cut(s) 68, 120
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 310
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 3 cut(s) 32, 74, 275
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 4 cut(s) 52, 141, 221, 279
MroNI GCCGGC 1 cut(s) 106
MseI TTAA 2 cut(s) 150, 221
MspI CCGG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 237
NaeI GCCGGC 1 cut(s) 108
NdeII GATC 1 cut(s) 292
NgoMIV GCCGGC 1 cut(s) 106
NlaIII CATG 1 cut(s) 299
NlaIV GGNNCC 1 cut(s) 188
NspV TTCGAA 1 cut(s) 246
PctI GAATGC 1 cut(s) 237
PdiI GCCGGC 1 cut(s) 108
PkrI GCNGC 1 cut(s) 129
PpuMI RGGWCCY 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 188
PspPI GGNCC 1 cut(s) 253
PspPPI RGGWCCY 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 116
SaqAI TTAA 2 cut(s) 150, 221
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 253
SetI ASST 4 cut(s) 44, 118, 184, 255
SfaNI GCATC 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 246
SinI GGWCC 1 cut(s) 253
SspMI CTAG 1 cut(s) 310
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 246
Tru1I TTAA 2 cut(s) 150, 221
Tru9I TTAA 2 cut(s) 150, 221
TscAI CASTG 2 cut(s) 51, 73
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 111, 264
TspRI CASTG 2 cut(s) 51, 73
VpaK11BI GGWCC 1 cut(s) 253
XspI CTAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.