Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010052

Physical Location & Seq

Genomic Coordinates Forward (+)

1480527 .. 1482864

Gene Structure 2338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAGGATCTGCCGCCTGGTTACCGTCCCAACGTTGGCGTTTGCCTCATTAACTCCGATAATCTGGTTTTCGTCGGATCAAGATTGAATGTTCCGGGTGCATGGCAGATGCCTCAGGGGGGCATTGAAGATGGCGAAGAACCAAAAACTGCAGCTATTAGGGAACTACGAGAAGAAACGGGGATAGAGTCTGCTGAAATCATTGCTGAGGTTCCGAATTGGTTGACATATGATTTTCCACCTGCCGTGAAGACCAAAGTTAATCGTCTATGGGGAGGTGAATGGCATGGGCAAGCACAAAAATGGTTTCTTATGAGATTCACAAAAAATGAGAGCGAGATCAACTTAGCTAATGGAGCAGCTGATCCGGAATTTGCAGAGTGGAAATGGGCTAGCCCTGAAGAAGTCATCGAGCAGGCAGTCGACTACAAGAGGCCAGCATACGAGGAAGTTATGAAGACATTCGAGTCCTACTTCAACGGAAGTAGTTTATCTGCGAAATGTAGATCGACAAAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004081 GO:0004551 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008796 GO:0008893 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009987 GO:0015959 GO:0015961 GO:0015965 GO:0015967 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042578 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0046434 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

174

Amino Acids

19.62

Weight (kDa)

4.75

Isoelectric Point (pI)

56.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	8 - 149	2.8e-24	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30110 AT1G30110
fragaria_vesca	FvH4_4g23240 FvH4_4g32510 FvH4_4g32510 FvH4_4g32510
malus_domestica	MD13G1024600.v1.1 MD16G1027300.v1.1
prunus_persica	Prupe.1G325900_v2.0.a1
pyrus_communis	pycom13g02290 pycom16g02310
rosa_chinensis	RchiOBHm_Chr4g0441391
rosa_laevigata	RLG00000006095
rosa_multiflora	Rmu_sc0005516.1_g000004
rosa_roxburghii	Rroxscaffold_5G00382270
rosa_rugosa	Rorug04G0333000
rosa_samantha	Rh4AG385000 Rh4BG399000 Rh4CG414100 Rh4DG391700
rosa_wichuraiana	Rw4G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	250
AasI	GACNNNNNNGTC	1 cut(s)	466
Acc36I	ACCTGC	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	423
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	1 cut(s)	14
AclI	AACGTT	1 cut(s)	33
AclWI	GGATC	3 cut(s)	15, 85, 359
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	420
AfiI	CCNNNNNNNGG	2 cut(s)	35, 119
AgsI	TTSAA	3 cut(s)	88, 128, 478
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	3 cut(s)	155, 350, 362
AluI	AGCT	3 cut(s)	155, 350, 362
AlwI	GGATC	3 cut(s)	15, 85, 359
Aor13HI	TCCGGA	1 cut(s)	367
AoxI	GGCC	1 cut(s)	434
ApeKI	GCWGC	2 cut(s)	152, 359
ApoI	RAATTY	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	461
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	290
AsuNHI	GCTAGC	1 cut(s)	392
AxyI	CCTNAGG	1 cut(s)	114
BbsI	GAAGAC	2 cut(s)	257, 464
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	164, 371
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	18
BcnI	CCSGG	1 cut(s)	96
BfaI	CTAG	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	3 cut(s)	14, 153, 360
BlsI	GCNGC	3 cut(s)	15, 154, 361
Bme1390I	CCNGG	2 cut(s)	18, 96
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	2 cut(s)	18, 96
BmsI	GCATC	1 cut(s)	99
BmtI	GCTAGC	1 cut(s)	396
BpiI	GAAGAC	2 cut(s)	257, 464
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 119
Bse21I	CCTNAGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	201
BseAI	TCCGGA	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	35, 119
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	2 cut(s)	128, 198
BseXI	GCAGC	2 cut(s)	164, 371
BshFI	GGCC	1 cut(s)	436
BsiSI	CCGG	2 cut(s)	95, 368
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	35, 119
BsmFI	GGGAC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	436
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	5 cut(s)	7, 77, 339, 364, 506
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	436
BspCNI	CTCAG	2 cut(s)	127, 199
BspEI	TCCGGA	1 cut(s)	367
BspLI	GGNNCC	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	154
BspMI	ACCTGC	1 cut(s)	250
BspOI	GCTAGC	1 cut(s)	396
BspPI	GGATC	3 cut(s)	15, 85, 359
BsrDI	GCAATG	1 cut(s)	201
BssMI	GATC	5 cut(s)	7, 77, 339, 364, 506
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	26
BstC8I	GCNNGC	4 cut(s)	294, 394, 417, 438
BstDEI	CTNAG	3 cut(s)	114, 207, 346
BstEII	GGTNACC	1 cut(s)	20
BstKTI	GATC	5 cut(s)	10, 80, 342, 367, 509
BstMBI	GATC	5 cut(s)	7, 77, 339, 364, 506
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	1 cut(s)	18
BstPI	GGTNACC	1 cut(s)	20
BstSCI	CCNGG	2 cut(s)	16, 94
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	164, 371
BstV2I	GAAGAC	2 cut(s)	257, 464
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
Bsu36I	CCTNAGG	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	436
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	4 cut(s)	294, 394, 417, 438
CviAII	CATG	2 cut(s)	102, 287
CviJI	RGCY	6 cut(s)	155, 350, 362, 392, 396, 436
CviKI_1	RGCY	6 cut(s)	155, 350, 362, 392, 396, 436
DdeI	CTNAG	3 cut(s)	114, 207, 346
DpnI	GATC	5 cut(s)	9, 79, 341, 366, 508
DpnII	GATC	5 cut(s)	7, 77, 339, 364, 506
DrdI	GACNNNNNNGTC	1 cut(s)	466
DseDI	GACNNNNNNGTC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	420
Eco81I	CCTNAGG	1 cut(s)	114
Eco91I	GGTNACC	1 cut(s)	20
EcoO65I	GGTNACC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	16
FaeI	CATG	2 cut(s)	105, 290
FaiI	YATR	8 cut(s)	103, 229, 231, 271, 288, 314, 442, 455
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	2 cut(s)	101, 286
FauNDI	CATATG	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	3 cut(s)	14, 153, 360
Fsp4HI	GCNGC	3 cut(s)	14, 153, 360
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	3 cut(s)	14, 153, 360
HaeIII	GGCC	1 cut(s)	436
HapII	CCGG	2 cut(s)	95, 368
Hin1II	CATG	2 cut(s)	105, 290
HincII	GTYRAC	2 cut(s)	225, 424
HindII	GTYRAC	2 cut(s)	225, 424
HinfI	GANTC	3 cut(s)	188, 318, 467
HpaII	CCGG	2 cut(s)	95, 368
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	2 cut(s)	225, 424
Hpy188I	TCNGA	3 cut(s)	58, 77, 216
Hpy188III	TCNNGA	2 cut(s)	81, 368
Hpy8I	GTNNAC	2 cut(s)	225, 424
Hpy99I	CGWCG	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	101, 152, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	3 cut(s)	114, 207, 346
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	105, 290
Kpn2I	TCCGGA	1 cut(s)	367
Kzo9I	GATC	5 cut(s)	7, 77, 339, 364, 506
LmnI	GCTCC	1 cut(s)	356
Lsp1109I	GCAGC	2 cut(s)	164, 371
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	5 cut(s)	9, 79, 341, 366, 508
MboI	GATC	5 cut(s)	7, 77, 339, 364, 506
MboII	GAAGA	6 cut(s)	140, 149, 185, 262, 413, 469
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	2 cut(s)	217, 371
MlyI	GAGTC	2 cut(s)	197, 476
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	6 cut(s)	56, 123, 202, 269, 426, 439
MroI	TCCGGA	1 cut(s)	367
MroXI	GAANNNNTTC	1 cut(s)	461
MseI	TTAA	2 cut(s)	51, 261
MslI	CAYNNNNRTG	1 cut(s)	301
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	2 cut(s)	95, 368
MspR9I	CCNGG	2 cut(s)	18, 96
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	356
NciI	CCSGG	1 cut(s)	96
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	5 cut(s)	7, 77, 339, 364, 506
NheI	GCTAGC	1 cut(s)	392
NlaIII	CATG	2 cut(s)	105, 290
NlaIV	GGNNCC	1 cut(s)	213
PaqCI	CACCTGC	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	318
PkrI	GCNGC	3 cut(s)	15, 154, 361
PleI	GAGTC	2 cut(s)	196, 475
PpsI	GAGTC	2 cut(s)	196, 475
Psp1406I	AACGTT	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	16
PspEI	GGTNACC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	301
SalI	GTCGAC	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	51, 261
SatI	GCNGC	3 cut(s)	14, 153, 360
Sau3AI	GATC	5 cut(s)	7, 77, 339, 364, 506
SchI	GAGTC	2 cut(s)	197, 476
ScrFI	CCNGG	2 cut(s)	18, 96
SetI	ASST	7 cut(s)	36, 157, 213, 244, 280, 352, 364
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	301
Sse9I	AATT	2 cut(s)	217, 371
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	2 cut(s)	16, 94
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	4 cut(s)	411, 423, 465, 509
TasI	AATT	2 cut(s)	217, 371
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	2 cut(s)	51, 261
Tru9I	TTAA	2 cut(s)	51, 261
TseI	GCWGC	2 cut(s)	152, 359
TspDTI	ATGAA	1 cut(s)	470
TspGWI	ACGGA	1 cut(s)	495
XapI	RAATTY	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	461
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.