pycom16g06720

Single-stranded DNA-binding protein WHY1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0009517
Physical Location & Seq
Reverse (-)
4354127 .. 4357186
3060 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 981 bp
ATGAGAAATATCATTAAATCGTACCCACTAGCTAATGATAAGCAGCCAGCCCAAATCCGGCCTGCCATCGTTTCAAAGCATATCCGGGTAGAGAGAGACAGACACAGACAAAGAGAAGAGGGAAGAGGGAGAGGAGTGAGAGTGTTCAGGATGCTGAAACTACACAAGCTATCTTCCCCTGCGATTGCACAGAAGCCTAACCAAAACCCTAGCCAGTTCCTCTCTTCGCAGCTCTTGAGCAGAGCTAGGGTTTTCAGCACCAACACCTTCGGCTTTGCTCCGAGTCCGATCTCGTCGAGGAAGAGACTCTCCTTGAAATGTCGCCAGTCGGAGTACTTCGACCAGCAGAGAACCAGCACCGCCGCTTCCCCGAACAAACCTTCTCCCGCTCCGCCAACTCCCGCCGGAGCAACTGGGATGGCGCCTAGGTTTTACGTGGGTCACTCGATATACAAGGGAAAGGCCGCTCTTACCGTAGAGCCCAAAGCTCCAGAGTTCACCCCTTTAGATTCAGGGGCATTCAAACTTTCCCGGGAAGGTTTTGTGCTACTTCAGTTTGCTCCAGCAGCTGGTGTTCGTGTATATGATTGGAGCCGAAAGCAGGTATTCTCGCTATCAGTGACAGAAATTGGAAGCCTGGTTAGCCTTGGCTCGAAGGAGTCCCTTGAATTTTTCCATGATCCTTTTAAGGGGAAAAGTGATGAGGGCAAGGTCAGGAAGGTGTTGAAGGTGGAGCCTCTTCCAGACGGATCTGGCCATTTCTTTAACCTGAGTGTTCAAAACAAGCTTATCAACTTGGACGAGAGCATTTATATTCCTATCACCAGAGCAGAATTTGCTGTTCTCAAATCAGCTTTCAATTTTATCTTGCCGTACATTTTAGGTTGGCATGCCTATGCAAACTCCATAAAACCAGAAGATTCGAGCCGTGCCAATAACTCTGGTCTTAAATATGGAGGAGATTTTGAATGGAGCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000229 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010639 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042162 GO:0042646 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045910 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904356 GO:1904357 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Whirly

Protein Analysis

327

Amino Acids

36.41

Weight (kDa)

10.17

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Whirly PF08536 150 - 285 5.5e-61 Whirly transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14410 AT2G02740
fragaria_vesca FvH4_4g31850 FvH4_4g31850
malus_domestica MD13G1078000.v1.1 MD16G1077800.v1.1
prunus_persica Prupe.1G269100_v2.0.a1
pyrus_communis pycom16g06720
rosa_chinensis RchiOBHm_Chr4g0440511
rosa_laevigata RLG00000006175
rosa_multiflora Rmu_sc0007648.1_g000008
rosa_roxburghii Rroxscaffold_5G00381340
rosa_rugosa Rorug04G0326400
rosa_samantha Rh4AG378000 Rh4BG390600 Rh4CG405300 Rh4DG384300 Rh5DG089700
rosa_wichuraiana Rw0G019510 Rw4G032300 Rw4G032350 Rw4G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 592
AccB1I GGYRCC 1 cut(s) 421
AccB7I CCANNNNNTGG 1 cut(s) 569
AccBSI CCGCTC 2 cut(s) 389, 467
AciI CCGC 6 cut(s) 360, 363, 387, 392, 402, 465
AclWI GGATC 2 cut(s) 674, 757
AcoI YGGCCR 1 cut(s) 754
AcsI RAATTY 2 cut(s) 668, 833
AcuI CTGAAG 1 cut(s) 536
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 3 cut(s) 23, 335, 875
AfiI CCNNNNNNNGG 4 cut(s) 57, 569, 601, 689
AgsI TTSAA 8 cut(s) 75, 316, 523, 668, 727, 779, 859, 968
AjnI CCWGG 1 cut(s) 636
AluBI AGCT 8 cut(s) 32, 169, 232, 245, 488, 569, 787, 854
AluI AGCT 8 cut(s) 32, 169, 232, 245, 488, 569, 787, 854
Alw26I GTCTC 2 cut(s) 90, 298
AlwI GGATC 2 cut(s) 674, 757
AlwNI CAGNNNCTG 1 cut(s) 569
Ama87I CYCGRG 1 cut(s) 531
AoxI GGCC 3 cut(s) 59, 462, 754
ApeKI GCWGC 3 cut(s) 43, 229, 566
ApoI RAATTY 2 cut(s) 668, 833
AspA2I CCTAGG 1 cut(s) 425
AspLEI GCGC 1 cut(s) 424
AsuC2I CCSGG 3 cut(s) 86, 532, 533
AsuHPI GGTGA 2 cut(s) 490, 814
AvaI CYCGRG 1 cut(s) 531
AvrII CCTAGG 1 cut(s) 425
BalI TGGCCA 1 cut(s) 756
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 483
BbvI GCAGC 3 cut(s) 55, 241, 578
BccI CCATC 2 cut(s) 74, 412
BceAI ACGGC 2 cut(s) 856, 912
BciT130I CCWGG 1 cut(s) 638
BcnI CCSGG 3 cut(s) 86, 532, 533
BcoDI GTCTC 2 cut(s) 90, 298
BfaI CTAG 4 cut(s) 29, 210, 246, 426
BfoI RGCGCY 1 cut(s) 425
BfuAI ACCTGC 1 cut(s) 592
BisI GCNGC 5 cut(s) 44, 230, 363, 465, 567
BlnI CCTAGG 1 cut(s) 425
BlsI GCNGC 5 cut(s) 45, 231, 364, 466, 568
BmcAI AGTACT 1 cut(s) 335
Bme1390I CCNGG 4 cut(s) 86, 532, 533, 638
BmeT110I CYCGRG 1 cut(s) 531
BmiI GGNNCC 4 cut(s) 423, 593, 735, 974
BmrFI CCNGG 4 cut(s) 86, 532, 533, 638
BmrI ACTGGG 1 cut(s) 423
BmsI GCATC 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 423
BpmI CTGGAG 2 cut(s) 474, 546
BpuEI CTTGAG 1 cut(s) 256
BpuMI CCSGG 3 cut(s) 86, 532, 533
BsaAI YACGTR 1 cut(s) 436
BsaHI GRCGYC 1 cut(s) 422
BsaJI CCNNGG 3 cut(s) 425, 531, 646
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 569, 601, 689
Bse118I RCCGGY 1 cut(s) 975
Bse1I ACTGG 3 cut(s) 214, 325, 418
BseBI CCWGG 1 cut(s) 638
BseDI CCNNGG 3 cut(s) 425, 531, 646
BseGI GGATG 2 cut(s) 156, 423
BseLI CCNNNNNNNGG 4 cut(s) 57, 569, 601, 689
BseMII CTCAG 1 cut(s) 761
BseNI ACTGG 3 cut(s) 214, 325, 418
BseRI GAGGAG 2 cut(s) 147, 972
BseXI GCAGC 3 cut(s) 55, 241, 578
BshFI GGCC 3 cut(s) 61, 464, 756
BshNI GGYRCC 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 531
BsiSI CCGG 5 cut(s) 58, 85, 405, 532, 976
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 4 cut(s) 57, 569, 601, 689
BsmAI GTCTC 2 cut(s) 90, 298
BsmFI GGGAC 1 cut(s) 646
BsmI GAATGC 1 cut(s) 518
BsnI GGCC 3 cut(s) 61, 464, 756
BsoBI CYCGRG 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 3 cut(s) 288, 679, 749
BspACI CCGC 6 cut(s) 360, 363, 387, 392, 402, 465
BspANI GGCC 3 cut(s) 61, 464, 756
BspCNI CTCAG 1 cut(s) 762
BspLI GGNNCC 4 cut(s) 423, 593, 735, 974
BspMI ACCTGC 1 cut(s) 592
BspPI GGATC 2 cut(s) 674, 757
BspT107I GGYRCC 1 cut(s) 421
BsrBI CCGCTC 2 cut(s) 389, 467
BsrFI RCCGGY 1 cut(s) 975
BsrI ACTGG 3 cut(s) 214, 325, 418
BssAI RCCGGY 1 cut(s) 975
BssECI CCNNGG 3 cut(s) 425, 531, 646
BssMI GATC 3 cut(s) 288, 679, 749
BssNI GRCGYC 1 cut(s) 422
BssT1I CCWWGG 2 cut(s) 425, 646
Bst2UI CCWGG 1 cut(s) 638
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 5 cut(s) 111, 118, 229, 296, 744
BstACI GRCGYC 1 cut(s) 422
BstAPI GCANNNNNTGC 1 cut(s) 836
BstBAI YACGTR 1 cut(s) 436
BstC8I GCNNGC 3 cut(s) 48, 63, 891
BstDEI CTNAG 1 cut(s) 770
BstF5I GGATG 2 cut(s) 156, 423
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 3 cut(s) 291, 682, 752
BstMAI GTCTC 2 cut(s) 90, 298
BstMBI GATC 3 cut(s) 288, 679, 749
BstMWI GCNNNNNNNGC 3 cut(s) 566, 642, 836
BstNI CCWGG 1 cut(s) 638
BstNSI RCATGY 1 cut(s) 893
BstSCI CCNGG 4 cut(s) 84, 530, 531, 636
BstV1I GCAGC 3 cut(s) 55, 241, 578
BstX2I RGATCY 1 cut(s) 749
BstYI RGATCY 1 cut(s) 749
BsuRI GGCC 3 cut(s) 61, 464, 756
BtsCI GGATG 2 cut(s) 156, 423
BtsIMutI CAGTG 1 cut(s) 624
BveI ACCTGC 1 cut(s) 592
Cac8I GCNNGC 3 cut(s) 48, 63, 891
CaiI CAGNNNCTG 1 cut(s) 569
CfoI GCGC 1 cut(s) 424
Cfr10I RCCGGY 1 cut(s) 975
Cfr9I CCCGGG 1 cut(s) 531
Csp6I GTAC 3 cut(s) 22, 334, 874
CviAII CATG 2 cut(s) 677, 890
CviQI GTAC 3 cut(s) 22, 334, 874
DdeI CTNAG 1 cut(s) 770
DinI GGCGCC 1 cut(s) 423
DpnI GATC 3 cut(s) 290, 681, 751
DpnII GATC 3 cut(s) 288, 679, 749
EaeI YGGCCR 1 cut(s) 754
Eam1104I CTCTTC 5 cut(s) 111, 118, 229, 296, 744
EarI CTCTTC 5 cut(s) 111, 118, 229, 296, 744
EciI GGCGGA 1 cut(s) 381
Eco130I CCWWGG 2 cut(s) 425, 646
Eco24I GRGCYC 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 536
Eco88I CYCGRG 1 cut(s) 531
EcoRII CCWGG 1 cut(s) 636
EcoT14I CCWWGG 2 cut(s) 425, 646
EcoT38I GRGCYC 1 cut(s) 483
EgeI GGCGCC 1 cut(s) 423
EheI GGCGCC 1 cut(s) 423
ErhI CCWWGG 2 cut(s) 425, 646
FaeI CATG 2 cut(s) 680, 893
FaqI GGGAC 1 cut(s) 646
FatI CATG 2 cut(s) 676, 889
FauI CCCGC 2 cut(s) 394, 409
Fnu4HI GCNGC 5 cut(s) 44, 230, 363, 465, 567
FokI GGATG 2 cut(s) 163, 430
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 5 cut(s) 44, 230, 363, 465, 567
FspBI CTAG 4 cut(s) 29, 210, 246, 426
GlaI GCGC 1 cut(s) 423
GluI GCNGC 5 cut(s) 44, 230, 363, 465, 567
GsuI CTGGAG 2 cut(s) 474, 546
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 3 cut(s) 61, 464, 756
HapII CCGG 5 cut(s) 58, 85, 405, 532, 976
HhaI GCGC 1 cut(s) 424
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 2 cut(s) 680, 893
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 5 cut(s) 283, 306, 509, 659, 920
HpaII CCGG 5 cut(s) 58, 85, 405, 532, 976
HphI GGTGA 2 cut(s) 490, 814
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 3 cut(s) 282, 288, 331
Hpy188III TCNNGA 5 cut(s) 148, 235, 491, 715, 743
Hpy8I GTNNAC 1 cut(s) 498
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 6 cut(s) 277, 390, 530, 649, 712, 721
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 2 cut(s) 188, 899
HpyF10VI GCNNNNNNNGC 3 cut(s) 566, 642, 836
HpyF3I CTNAG 1 cut(s) 770
HpySE526I ACGT 1 cut(s) 435
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 2 cut(s) 680, 893
HspAI GCGC 1 cut(s) 422
KasI GGCGCC 1 cut(s) 421
Kzo9I GATC 3 cut(s) 288, 679, 749
LmnI GCTCC 8 cut(s) 283, 394, 407, 493, 565, 591, 733, 972
Lsp1109I GCAGC 3 cut(s) 55, 241, 578
LweI GCATC 1 cut(s) 141
MaeI CTAG 4 cut(s) 29, 210, 246, 426
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 2 cut(s) 440, 619
MalI GATC 3 cut(s) 290, 681, 751
MbiI CCGCTC 2 cut(s) 389, 467
MboI GATC 3 cut(s) 288, 679, 749
MboII GAAGA 7 cut(s) 128, 135, 165, 216, 313, 731, 929
MflI RGATCY 1 cut(s) 749
MhlI GDGCHC 1 cut(s) 483
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 4 cut(s) 627, 668, 833, 859
MluNI TGGCCA 1 cut(s) 756
Mly113I GGCGCC 1 cut(s) 422
MlyI GAGTC 3 cut(s) 292, 300, 668
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 8 cut(s) 112, 119, 125, 230, 291, 697, 747, 950
Mox20I TGGCCA 1 cut(s) 756
MscI TGGCCA 1 cut(s) 756
MseI TTAA 4 cut(s) 15, 687, 765, 948
MslI CAYNNNNRTG 1 cut(s) 894
Msp20I TGGCCA 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 569
MspI CCGG 5 cut(s) 58, 85, 405, 532, 976
MspR9I CCNGG 4 cut(s) 86, 532, 533, 638
Mva1269I GAATGC 1 cut(s) 518
MvaI CCWGG 1 cut(s) 638
MwoI GCNNNNNNNGC 3 cut(s) 566, 642, 836
NarI GGCGCC 1 cut(s) 422
NciI CCSGG 3 cut(s) 86, 532, 533
NdeII GATC 3 cut(s) 288, 679, 749
NlaIII CATG 2 cut(s) 680, 893
NlaIV GGNNCC 4 cut(s) 423, 593, 735, 974
NmuCI GTSAC 2 cut(s) 440, 619
NspI RCATGY 1 cut(s) 893
PaeI GCATGC 1 cut(s) 893
PctI GAATGC 1 cut(s) 518
PfeI GAWTC 2 cut(s) 509, 920
PflMI CCANNNNNTGG 1 cut(s) 569
PkrI GCNGC 5 cut(s) 45, 231, 364, 466, 568
PleI GAGTC 3 cut(s) 291, 300, 667
PluTI GGCGCC 1 cut(s) 425
PpsI GAGTC 3 cut(s) 291, 300, 667
Ppu21I YACGTR 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 636
PspGI CCWGG 1 cut(s) 636
PspN4I GGNNCC 4 cut(s) 423, 593, 735, 974
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 1 cut(s) 749
PvuII CAGCTG 1 cut(s) 569
RsaI GTAC 3 cut(s) 23, 335, 875
RsaNI GTAC 3 cut(s) 22, 334, 874
RseI CAYNNNNRTG 1 cut(s) 894
SaqAI TTAA 4 cut(s) 15, 687, 765, 948
SatI GCNGC 5 cut(s) 44, 230, 363, 465, 567
Sau3AI GATC 3 cut(s) 288, 679, 749
ScaI AGTACT 1 cut(s) 335
SchI GAGTC 3 cut(s) 292, 300, 668
ScrFI CCNGG 4 cut(s) 86, 532, 533, 638
SduI GDGCHC 1 cut(s) 483
SfaNI GCATC 1 cut(s) 141
SfoI GGCGCC 1 cut(s) 423
SmaI CCCGGG 1 cut(s) 533
SmiMI CAYNNNNRTG 1 cut(s) 894
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
SphI GCATGC 1 cut(s) 893
Sse9I AATT 4 cut(s) 627, 668, 833, 859
SsiI CCGC 6 cut(s) 360, 363, 387, 392, 402, 465
SspDI GGCGCC 1 cut(s) 421
SspMI CTAG 4 cut(s) 29, 210, 246, 426
StyD4I CCNGG 4 cut(s) 84, 530, 531, 636
StyI CCWWGG 2 cut(s) 425, 646
TaaI ACNGT 1 cut(s) 475
TaiI ACGT 1 cut(s) 438
TaqI TCGA 5 cut(s) 296, 339, 446, 653, 923
TasI AATT 4 cut(s) 627, 668, 833, 859
TatI WGTACW 1 cut(s) 333
TauI GCSGC 2 cut(s) 365, 467
TfiI GAWTC 2 cut(s) 509, 920
Tru1I TTAA 4 cut(s) 15, 687, 765, 948
Tru9I TTAA 4 cut(s) 15, 687, 765, 948
TscAI CASTG 1 cut(s) 624
TseFI GTSAC 2 cut(s) 440, 619
TseI GCWGC 3 cut(s) 43, 229, 566
Tsp45I GTSAC 2 cut(s) 440, 619
TspGWI ACGGA 1 cut(s) 762
TspMI CCCGGG 1 cut(s) 531
TspRI CASTG 1 cut(s) 624
Van91I CCANNNNNTGG 1 cut(s) 569
XapI RAATTY 2 cut(s) 668, 833
XceI RCATGY 1 cut(s) 893
XmaI CCCGGG 1 cut(s) 531
XmaJI CCTAGG 1 cut(s) 425
XspI CTAG 4 cut(s) 29, 210, 246, 426
ZrmI AGTACT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.