pycom16g07310

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0016191
Physical Location & Seq
Reverse (-)
4774925 .. 4775584
660 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 660 bp
ATGAACACAATCAATTATCTCTTTCTCCAATTATTCCTCAACCTAGCTCTATTCGGCCGCACCAAATCCGACCCGGATCCGCTCCAGGACTACTGCATAGCGGATCCGGAAACCCCTCAGGAATTTTCCCTCAATGGTGCACCATGCATTGACCCAAACCTAGCAACCTCTTCCCACTTCACCACATCAGCCCTATCCAAACCAGGCGACACTAAAGCCAACGGGTTCAACGTGACCCTCACCAACCGGTTCAATCTGCCCGGGCTCAACACATTGGGCCTGACCATGGCCCGAGTTGACATAGATGCCAATGGGATTGTGCCACCTCACTTGCATCCAAGGGCCTCGGAGGTCACAATCTGCCTCACGGGCTTCCTTCTTGTGGGCTTTGTGGACACATCAAACCGGGTCTTTACCCAGCAACTGAGGCCCGGGGAGTCTTTTGTGTTCCCCAAGGGTTTGATACATTTTCTGTACAACTACGACTCGTTGGAACCAGCCGTGGCATTGGCCGGGCTCGGTAGCCAAAACCCTGGTGCACAGATTGCGTCCATGGCCTCGTTCACATCCGAGCCTTCAAACCCCGTCGAGATTTTGAAGAAAGGGTTTCAGATTAGTGACCTAAACGCTGCCTGGATTCGGAGGAACCTCGGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

220

Amino Acids

23.71

Weight (kDa)

5.48

Isoelectric Point (pI)

27.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 65 - 207 1.3e-38 Cupin
Cupin_2 PF07883 98 - 170 2.3e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10460
fragaria_vesca FvH4_4g35250
malus_domestica MD16G1084100.v1.1
prunus_persica Prupe.1G261900_v2.0.a1
pyrus_communis pycom16g07310
rosa_chinensis RchiOBHm_Chr4g0444861
rosa_laevigata RLG00000005794
rosa_multiflora Rmu_sc0006845.1_g000007
rosa_roxburghii Rroxscaffold_5G00385350
rosa_rugosa Rorug04G0355700
rosa_samantha Rh4AG417200 Rh4BG429000 Rh4CG443700 Rh4DG424900
rosa_wichuraiana Rw4G035760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 82
AccIII TCCGGA 1 cut(s) 106
AciI CCGC 3 cut(s) 58, 80, 101
AclWI GGATC 4 cut(s) 71, 84, 98, 111
AcoI YGGCCR 2 cut(s) 55, 510
AcsI RAATTY 1 cut(s) 122
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 3 cut(s) 286, 382, 639
AgeI ACCGGT 1 cut(s) 246
AgsI TTSAA 4 cut(s) 229, 253, 579, 598
AjnI CCWGG 4 cut(s) 84, 202, 532, 632
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw21I GWGCWC 2 cut(s) 142, 541
Alw44I GTGCAC 2 cut(s) 138, 537
AlwI GGATC 4 cut(s) 71, 84, 98, 111
AlwNI CAGNNNCTG 1 cut(s) 424
Ama87I CYCGRG 3 cut(s) 260, 291, 431
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 7 cut(s) 55, 277, 288, 342, 428, 510, 555
ApaLI GTGCAC 2 cut(s) 138, 537
ApeKI GCWGC 1 cut(s) 629
ApoI RAATTY 1 cut(s) 122
AsiGI ACCGGT 1 cut(s) 246
AspS9I GGNCC 4 cut(s) 277, 289, 342, 429
AsuC2I CCSGG 7 cut(s) 74, 261, 262, 407, 432, 433, 514
AsuHPI GGTGA 2 cut(s) 172, 232
AvaI CYCGRG 3 cut(s) 260, 291, 431
AxyI CCTNAGG 1 cut(s) 117
BaeGI GKGCMC 2 cut(s) 142, 541
BamHI GGATCC 2 cut(s) 76, 103
BanII GRGCYC 2 cut(s) 267, 519
Bbv12I GWGCWC 2 cut(s) 142, 541
BbvI GCAGC 1 cut(s) 616
BceAI ACGGC 1 cut(s) 485
BciT130I CCWGG 4 cut(s) 86, 204, 534, 634
BcnI CCSGG 7 cut(s) 74, 261, 262, 407, 432, 433, 514
BfaI CTAG 2 cut(s) 44, 161
BglI GCCNNNNNGGC 1 cut(s) 369
BisI GCNGC 2 cut(s) 58, 630
BlsI GCNGC 2 cut(s) 59, 631
BmeT110I CYCGRG 3 cut(s) 260, 291, 431
BmgT120I GGNCC 4 cut(s) 277, 289, 342, 429
BmiI GGNNCC 4 cut(s) 78, 105, 495, 647
BmsI GCATC 2 cut(s) 295, 343
BpmI CTGGAG 1 cut(s) 68
BpuMI CCSGG 7 cut(s) 74, 261, 262, 407, 432, 433, 514
BsaWI WCCGGW 2 cut(s) 106, 246
Bsc4I CCNNNNNNNGG 3 cut(s) 286, 382, 639
Bse118I RCCGGY 1 cut(s) 246
Bse21I CCTNAGG 1 cut(s) 117
BseAI TCCGGA 1 cut(s) 106
BseBI CCWGG 4 cut(s) 86, 204, 534, 634
BseGI GGATG 2 cut(s) 334, 566
BseLI CCNNNNNNNGG 3 cut(s) 286, 382, 639
BseMII CTCAG 2 cut(s) 131, 416
BseSI GKGCMC 2 cut(s) 142, 541
BseX3I CGGCCG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 616
BseYI CCCAGC 1 cut(s) 417
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 7 cut(s) 57, 279, 290, 344, 430, 512, 557
BshTI ACCGGT 1 cut(s) 246
BsiEI CGRYCG 1 cut(s) 58
BsiHKAI GWGCWC 2 cut(s) 142, 541
BsiHKCI CYCGRG 3 cut(s) 260, 291, 431
BsiSI CCGG 7 cut(s) 74, 107, 247, 261, 406, 432, 513
BslI CCNNNNNNNGG 3 cut(s) 286, 382, 639
BsnI GGCC 7 cut(s) 57, 279, 290, 344, 430, 512, 557
BsoBI CYCGRG 3 cut(s) 260, 291, 431
Bsp1286I GDGCHC 4 cut(s) 142, 267, 519, 541
Bsp13I TCCGGA 1 cut(s) 106
Bsp1407I TGTACA 1 cut(s) 474
Bsp143I GATC 2 cut(s) 76, 103
Bsp19I CCATGG 2 cut(s) 285, 552
BspACI CCGC 3 cut(s) 58, 80, 101
BspANI GGCC 7 cut(s) 57, 279, 290, 344, 430, 512, 557
BspCNI CTCAG 2 cut(s) 130, 417
BspEI TCCGGA 1 cut(s) 106
BspLI GGNNCC 4 cut(s) 78, 105, 495, 647
BspPI GGATC 4 cut(s) 71, 84, 98, 111
BsrBI CCGCTC 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 246
BsrGI TGTACA 1 cut(s) 474
BssAI RCCGGY 1 cut(s) 246
BssMI GATC 2 cut(s) 76, 103
BssT1I CCWWGG 4 cut(s) 285, 338, 453, 552
Bst2UI CCWGG 4 cut(s) 86, 204, 534, 634
Bst6I CTCTTC 1 cut(s) 175
BstAPI GCANNNNNTGC 1 cut(s) 545
BstAUI TGTACA 1 cut(s) 474
BstDEI CTNAG 2 cut(s) 117, 425
BstDSI CCRYGG 3 cut(s) 285, 501, 552
BstF5I GGATG 2 cut(s) 334, 566
BstKTI GATC 2 cut(s) 79, 106
BstMBI GATC 2 cut(s) 76, 103
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 4 cut(s) 369, 427, 545, 554
BstNI CCWGG 4 cut(s) 86, 204, 534, 634
BstSLI GKGCMC 2 cut(s) 142, 541
BstV1I GCAGC 1 cut(s) 616
BstX2I RGATCY 2 cut(s) 76, 103
BstXI CCANNNNNNTGG 1 cut(s) 533
BstYI RGATCY 2 cut(s) 76, 103
BstZI CGGCCG 1 cut(s) 55
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 7 cut(s) 57, 279, 290, 344, 430, 512, 557
BtgI CCRYGG 3 cut(s) 285, 501, 552
BtsCI GGATG 2 cut(s) 334, 566
CaiI CAGNNNCTG 1 cut(s) 424
Cfr10I RCCGGY 1 cut(s) 246
Cfr13I GGNCC 4 cut(s) 277, 289, 342, 429
Cfr9I CCCGGG 2 cut(s) 260, 431
CseI GACGC 1 cut(s) 537
Csp6I GTAC 1 cut(s) 475
CspAI ACCGGT 1 cut(s) 246
CspCI CAANNNNNGTGG 2 cut(s) 312, 347
CviAII CATG 3 cut(s) 144, 286, 553
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 2 cut(s) 117, 425
DpnI GATC 2 cut(s) 78, 105
DpnII GATC 2 cut(s) 76, 103
EaeI YGGCCR 2 cut(s) 55, 510
EagI CGGCCG 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
EclXI CGGCCG 1 cut(s) 55
Eco130I CCWWGG 4 cut(s) 285, 338, 453, 552
Eco24I GRGCYC 2 cut(s) 267, 519
Eco52I CGGCCG 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 117
Eco88I CYCGRG 3 cut(s) 260, 291, 431
EcoO109I RGGNCCY 1 cut(s) 342
EcoRII CCWGG 4 cut(s) 84, 202, 532, 632
EcoT14I CCWWGG 4 cut(s) 285, 338, 453, 552
EcoT22I ATGCAT 1 cut(s) 149
EcoT38I GRGCYC 2 cut(s) 267, 519
ErhI CCWWGG 4 cut(s) 285, 338, 453, 552
FaeI CATG 3 cut(s) 147, 289, 556
FaiI YATR 5 cut(s) 98, 145, 287, 302, 554
FatI CATG 3 cut(s) 143, 285, 552
Fnu4HI GCNGC 2 cut(s) 58, 630
FokI GGATG 2 cut(s) 321, 553
FriOI GRGCYC 2 cut(s) 267, 519
Fsp4HI GCNGC 2 cut(s) 58, 630
FspBI CTAG 2 cut(s) 44, 161
GluI GCNGC 2 cut(s) 58, 630
GsaI CCCAGC 1 cut(s) 421
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 7 cut(s) 57, 279, 290, 344, 430, 512, 557
HapII CCGG 7 cut(s) 74, 107, 247, 261, 406, 432, 513
HgaI GACGC 1 cut(s) 537
Hin1II CATG 3 cut(s) 147, 289, 556
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 3 cut(s) 437, 485, 637
HpaII CCGG 7 cut(s) 74, 107, 247, 261, 406, 432, 513
HphI GGTGA 2 cut(s) 172, 232
Hpy166II GTNNAC 5 cut(s) 140, 298, 394, 539, 564
Hpy188I TCNGA 6 cut(s) 70, 349, 571, 612, 642, 653
Hpy188III TCNNGA 3 cut(s) 107, 119, 589
Hpy8I GTNNAC 5 cut(s) 140, 298, 394, 539, 564
Hpy99I CGWCG 1 cut(s) 590
HpyAV CCTTC 2 cut(s) 386, 585
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 5 cut(s) 96, 140, 147, 334, 539
HpyF10VI GCNNNNNNNGC 4 cut(s) 369, 427, 545, 554
HpyF3I CTNAG 2 cut(s) 117, 425
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 3 cut(s) 147, 289, 556
Kpn2I TCCGGA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 76, 103
LmnI GCTCC 1 cut(s) 87
Lsp1109I GCAGC 1 cut(s) 616
LweI GCATC 2 cut(s) 295, 343
MaeI CTAG 2 cut(s) 44, 161
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 3 cut(s) 232, 352, 617
MalI GATC 2 cut(s) 78, 105
MbiI CCGCTC 1 cut(s) 82
MboI GATC 2 cut(s) 76, 103
MboII GAAGA 2 cut(s) 162, 610
MflI RGATCY 2 cut(s) 76, 103
MhlI GDGCHC 4 cut(s) 142, 267, 519, 541
MluCI AATT 3 cut(s) 13, 29, 122
MlyI GAGTC 2 cut(s) 446, 479
MmeI TCCRAC 2 cut(s) 93, 471
Mph1103I ATGCAT 1 cut(s) 149
MroI TCCGGA 1 cut(s) 106
MspI CCGG 7 cut(s) 74, 107, 247, 261, 406, 432, 513
MvaI CCWGG 4 cut(s) 86, 204, 534, 634
MwoI GCNNNNNNNGC 4 cut(s) 369, 427, 545, 554
NciI CCSGG 7 cut(s) 74, 261, 262, 407, 432, 433, 514
NcoI CCATGG 2 cut(s) 285, 552
NdeII GATC 2 cut(s) 76, 103
NlaIII CATG 3 cut(s) 147, 289, 556
NlaIV GGNNCC 4 cut(s) 78, 105, 495, 647
NmuCI GTSAC 3 cut(s) 232, 352, 617
NsiI ATGCAT 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PfeI GAWTC 1 cut(s) 637
PfoI TCCNGGA 1 cut(s) 84
PinAI ACCGGT 1 cut(s) 246
PkrI GCNGC 2 cut(s) 59, 631
PleI GAGTC 2 cut(s) 445, 479
PpsI GAGTC 2 cut(s) 445, 479
Psp6I CCWGG 4 cut(s) 84, 202, 532, 632
PspFI CCCAGC 1 cut(s) 417
PspGI CCWGG 4 cut(s) 84, 202, 532, 632
PspN4I GGNNCC 4 cut(s) 78, 105, 495, 647
PspPI GGNCC 4 cut(s) 277, 289, 342, 429
PstNI CAGNNNCTG 1 cut(s) 424
PsuI RGATCY 2 cut(s) 76, 103
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
SatI GCNGC 2 cut(s) 58, 630
Sau3AI GATC 2 cut(s) 76, 103
Sau96I GGNCC 4 cut(s) 277, 289, 342, 429
SchI GAGTC 2 cut(s) 446, 479
SduI GDGCHC 4 cut(s) 142, 267, 519, 541
SfaNI GCATC 2 cut(s) 295, 343
SmaI CCCGGG 2 cut(s) 262, 433
SrfI GCCCGGGC 1 cut(s) 262
Sse9I AATT 3 cut(s) 13, 29, 122
SsiI CCGC 3 cut(s) 58, 80, 101
SspMI CTAG 2 cut(s) 44, 161
StyI CCWWGG 4 cut(s) 285, 338, 453, 552
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 588
TasI AATT 3 cut(s) 13, 29, 122
TatI WGTACW 1 cut(s) 474
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 1 cut(s) 637
TseFI GTSAC 3 cut(s) 232, 352, 617
TseI GCWGC 1 cut(s) 629
Tsp45I GTSAC 3 cut(s) 232, 352, 617
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 2 cut(s) 260, 431
VneI GTGCAC 2 cut(s) 138, 537
XapI RAATTY 1 cut(s) 122
XmaI CCCGGG 2 cut(s) 260, 431
XspI CTAG 2 cut(s) 44, 161
Zsp2I ATGCAT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.