Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013316

Physical Location & Seq

Genomic Coordinates Forward (+)

6970824 .. 6971930

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCCTCCGCTTGGGCTTCCTCTTCCGCCATTGCAACCGTCGCCGTATCTTCACGCTCCCAGAAGGGTGGGGCTACTTTGGCAGCGACCAAGGCTTCTTTCTTTGGTGGAAGGAAGCTGAGAGTGAGAAGCTTCACAGCATCCACCGGATCATCGTCATCTTTTACAGTACGTGCTGCTGCTGCTGACCCTGATAGACCTCTGTGGTTTCCGGGAAGCACCCCTCCACCATGGCTCGATGGAAGCCTCCCAGGAGACTTTGGCTTTGATCCGCTTGGTCTTTCATCTGACCCAGACAGCCTGAAATGGAACCAGCAAGCGGAGCTTGTACACTGCAGATGGGCAATGCTCGGCGCAGCCGGAATCTTCATCCCCGAATTCTTGACCAAAATTGGCATTCTAAACACCCCATCATGGTACACAGCCGGAGAGCAAGAGTACTTCACAGACACCACCACTCTCTTCGTCGTTGAACTTGTTAGGGCCGATTATGGATCGATCGGGTGGGCCGAGGGAAGGAGATGGGCGGACATCCTCAAGCCCGGGTCTGTTAACACAGACCCAATCTTCCCCAACAACAAGCTCACCGGGACAGATGTTGGGTACCCGGGAGGGCTCTGGTTTGACCCACTTGGATGGGGAAGCGGCTCGCCTGAGAAGATCAAGGAGTTGAGGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

227

Amino Acids

24.21

Weight (kDa)

5.86

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	75 - 225	5.9e-37	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61470
fragaria_vesca	FvH4_4g23750 FvH4_4g23750
malus_domestica	MD13G1119100.v1.1 MD16G1119500.v1.1
prunus_persica	Prupe.1G225700_v2.0.a1
pyrus_communis	pycom13g10390 pycom16g10220
rosa_chinensis	RchiOBHm_Chr4g0430241
rosa_laevigata	RLG00000006992
rosa_multiflora	Rmu_sc0001089.1_g000008
rosa_roxburghii	Rroxscaffold_5G00372030
rosa_rugosa	Rorug04G0241800
rosa_samantha	Rh4AG298200 Rh4BG304800 Rh4CG320100 Rh4DG302100
rosa_wichuraiana	Rw4G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	603
AccB1I	GGYRCC	1 cut(s)	603
AciI	CCGC	6 cut(s)	9, 27, 272, 320, 527, 645
AclWI	GGATC	3 cut(s)	157, 263, 502
AcsI	RAATTY	1 cut(s)	377
AfaI	GTAC	5 cut(s)	171, 330, 419, 440, 605
AfiI	CCNNNNNNNGG	4 cut(s)	12, 319, 414, 516
AgsI	TTSAA	1 cut(s)	473
AjnI	CCWGG	1 cut(s)	250
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	4 cut(s)	118, 132, 325, 583
AluI	AGCT	4 cut(s)	118, 132, 325, 583
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	3 cut(s)	157, 263, 502
Ama87I	CYCGRG	2 cut(s)	542, 607
AoxI	GGCC	3 cut(s)	3, 483, 507
ApeKI	GCWGC	5 cut(s)	83, 176, 179, 182, 356
ApoI	RAATTY	1 cut(s)	377
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
Asp718I	GGTACC	1 cut(s)	603
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	2 cut(s)	483, 507
AsuC2I	CCSGG	6 cut(s)	213, 543, 544, 589, 608, 609
AsuHPI	GGTGA	1 cut(s)	577
AvaI	CYCGRG	2 cut(s)	542, 607
BanI	GGYRCC	1 cut(s)	603
BanII	GRGCYC	1 cut(s)	618
BbvI	GCAGC	5 cut(s)	95, 163, 166, 169, 368
BccI	CCATC	5 cut(s)	233, 333, 418, 516, 630
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	252
BcnI	CCSGG	6 cut(s)	213, 543, 544, 589, 608, 609
BcoDI	GTCTC	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	334
BisI	GCNGC	6 cut(s)	84, 177, 180, 183, 357, 646
BlsI	GCNGC	6 cut(s)	85, 178, 181, 184, 358, 647
BmcAI	AGTACT	1 cut(s)	440
Bme1390I	CCNGG	7 cut(s)	213, 252, 543, 544, 589, 608, 609
BmeT110I	CYCGRG	2 cut(s)	542, 607
BmgT120I	GGNCC	2 cut(s)	483, 507
BmiI	GGNNCC	2 cut(s)	311, 605
BmrFI	CCNGG	7 cut(s)	213, 252, 543, 544, 589, 608, 609
BmsI	GCATC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	6 cut(s)	213, 543, 544, 589, 608, 609
Bsa29I	ATCGAT	1 cut(s)	497
BsaAI	YACGTR	1 cut(s)	173
BsaJI	CCNNGG	6 cut(s)	90, 230, 250, 510, 542, 607
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 319, 414, 516
Bse3DI	GCAATG	2 cut(s)	30, 351
BseBI	CCWGG	1 cut(s)	252
BseCI	ATCGAT	1 cut(s)	497
BseDI	CCNNGG	6 cut(s)	90, 230, 250, 510, 542, 607
BseGI	GGATG	4 cut(s)	140, 369, 531, 641
BseLI	CCNNNNNNNGG	4 cut(s)	12, 319, 414, 516
BseMI	GCAATG	2 cut(s)	30, 351
BseMII	CTCAG	2 cut(s)	110, 645
BseXI	GCAGC	5 cut(s)	95, 163, 166, 169, 368
Bsh1285I	CGRYCG	1 cut(s)	501
BshFI	GGCC	3 cut(s)	5, 485, 509
BshNI	GGYRCC	1 cut(s)	603
BshVI	ATCGAT	1 cut(s)	497
BsiEI	CGRYCG	1 cut(s)	501
BsiHKCI	CYCGRG	2 cut(s)	542, 607
BsiSI	CCGG	7 cut(s)	147, 212, 360, 426, 543, 588, 608
BslFI	GGGAC	1 cut(s)	604
BslI	CCNNNNNNNGG	4 cut(s)	12, 319, 414, 516
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	604
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	3 cut(s)	5, 485, 509
BsoBI	CYCGRG	2 cut(s)	542, 607
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	5 cut(s)	149, 268, 494, 498, 660
Bsp19I	CCATGG	1 cut(s)	230
BspACI	CCGC	6 cut(s)	9, 27, 272, 320, 527, 645
BspANI	GGCC	3 cut(s)	5, 485, 509
BspCNI	CTCAG	2 cut(s)	111, 646
BspDI	ATCGAT	1 cut(s)	497
BspLI	GGNNCC	2 cut(s)	311, 605
BspMAI	CTGCAG	1 cut(s)	338
BspPI	GGATC	3 cut(s)	157, 263, 502
BspT107I	GGYRCC	1 cut(s)	603
BsrDI	GCAATG	2 cut(s)	30, 351
BsrGI	TGTACA	1 cut(s)	328
BssECI	CCNNGG	6 cut(s)	90, 230, 250, 510, 542, 607
BssMI	GATC	5 cut(s)	149, 268, 494, 498, 660
BssT1I	CCWWGG	2 cut(s)	90, 230
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	40, 169
Bst6I	CTCTTC	2 cut(s)	28, 467
BstAUI	TGTACA	1 cut(s)	328
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	318, 650
BstDEI	CTNAG	2 cut(s)	119, 654
BstDSI	CCRYGG	1 cut(s)	230
BstF5I	GGATG	4 cut(s)	140, 369, 531, 641
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	5 cut(s)	152, 271, 497, 501, 663
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	5 cut(s)	149, 268, 494, 498, 660
BstMCI	CGRYCG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 80, 92, 182, 322
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	7 cut(s)	211, 250, 541, 542, 587, 606, 607
BstSFI	CTRYAG	1 cut(s)	334
BstV1I	GCAGC	5 cut(s)	95, 163, 166, 169, 368
BstXI	CCANNNNNNTGG	2 cut(s)	68, 636
Bsu15I	ATCGAT	1 cut(s)	497
BsuRI	GGCC	3 cut(s)	5, 485, 509
BsuTUI	ATCGAT	1 cut(s)	497
BtgI	CCRYGG	1 cut(s)	230
BtsCI	GGATG	4 cut(s)	140, 369, 531, 641
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	318, 650
CfoI	GCGC	1 cut(s)	356
Cfr13I	GGNCC	2 cut(s)	483, 507
Cfr9I	CCCGGG	2 cut(s)	542, 607
ClaI	ATCGAT	1 cut(s)	497
Csp6I	GTAC	5 cut(s)	170, 329, 418, 439, 604
CviAII	CATG	2 cut(s)	231, 414
CviQI	GTAC	5 cut(s)	170, 329, 418, 439, 604
DdeI	CTNAG	2 cut(s)	119, 654
DpnI	GATC	5 cut(s)	151, 270, 496, 500, 662
DpnII	GATC	5 cut(s)	149, 268, 494, 498, 660
Eam1104I	CTCTTC	2 cut(s)	28, 467
EarI	CTCTTC	2 cut(s)	28, 467
EciI	GGCGGA	2 cut(s)	16, 542
Eco130I	CCWWGG	2 cut(s)	90, 230
Eco24I	GRGCYC	1 cut(s)	618
Eco88I	CYCGRG	2 cut(s)	542, 607
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	2 cut(s)	90, 230
EcoT38I	GRGCYC	1 cut(s)	618
ErhI	CCWWGG	2 cut(s)	90, 230
FaeI	CATG	2 cut(s)	234, 417
FaiI	YATR	4 cut(s)	232, 415, 492, 679
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	1 cut(s)	604
FatI	CATG	2 cut(s)	230, 413
Fnu4HI	GCNGC	6 cut(s)	84, 177, 180, 183, 357, 646
FokI	GGATG	4 cut(s)	127, 356, 518, 648
FriOI	GRGCYC	1 cut(s)	618
Fsp4HI	GCNGC	6 cut(s)	84, 177, 180, 183, 357, 646
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	6 cut(s)	84, 177, 180, 183, 357, 646
HaeIII	GGCC	3 cut(s)	5, 485, 509
HapII	CCGG	7 cut(s)	147, 212, 360, 426, 543, 588, 608
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	2 cut(s)	234, 417
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	1 cut(s)	363
HpaI	GTTAAC	1 cut(s)	553
HpaII	CCGG	7 cut(s)	147, 212, 360, 426, 543, 588, 608
HphI	GGTGA	1 cut(s)	577
Hpy166II	GTNNAC	3 cut(s)	331, 420, 553
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	1 cut(s)	382
Hpy8I	GTNNAC	3 cut(s)	331, 420, 553
Hpy99I	CGWCG	2 cut(s)	44, 470
HpyAV	CCTTC	3 cut(s)	58, 105, 510
HpyCH4III	ACNGT	2 cut(s)	40, 169
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	2 cut(s)	35, 336
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 80, 92, 182, 322
HpyF3I	CTNAG	2 cut(s)	119, 654
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	2 cut(s)	234, 417
HspAI	GCGC	1 cut(s)	354
KpnI	GGTACC	1 cut(s)	607
KspAI	GTTAAC	1 cut(s)	553
Kzo9I	GATC	5 cut(s)	149, 268, 494, 498, 660
LmnI	GCTCC	2 cut(s)	62, 322
Lsp1109I	GCAGC	5 cut(s)	95, 163, 166, 169, 368
LweI	GCATC	1 cut(s)	149
MaeII	ACGT	1 cut(s)	172
MalI	GATC	5 cut(s)	151, 270, 496, 500, 662
MboI	GATC	5 cut(s)	149, 268, 494, 498, 660
MboII	GAAGA	6 cut(s)	15, 42, 358, 454, 559, 670
MhlI	GDGCHC	1 cut(s)	618
MluCI	AATT	2 cut(s)	377, 390
MnlI	CCTC	9 cut(s)	16, 31, 210, 234, 257, 505, 545, 605, 666
MseI	TTAA	1 cut(s)	552
MslI	CAYNNNNRTG	1 cut(s)	634
MspI	CCGG	7 cut(s)	147, 212, 360, 426, 543, 588, 608
MspR9I	CCNGG	7 cut(s)	213, 252, 543, 544, 589, 608, 609
Mva1269I	GAATGC	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	5 cut(s)	41, 80, 92, 182, 322
NciI	CCSGG	6 cut(s)	213, 543, 544, 589, 608, 609
NcoI	CCATGG	1 cut(s)	230
NdeII	GATC	5 cut(s)	149, 268, 494, 498, 660
NlaIII	CATG	2 cut(s)	234, 417
NlaIV	GGNNCC	2 cut(s)	311, 605
NmeAIII	GCCGAG	2 cut(s)	330, 535
PcsI	WCGNNNNNNNCGW	1 cut(s)	507
PctI	GAATGC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	363
PfoI	TCCNGGA	1 cut(s)	211
PkrI	GCNGC	6 cut(s)	85, 178, 181, 184, 358, 647
Ple19I	CGATCG	1 cut(s)	501
Ppu21I	YACGTR	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	311, 605
PspPI	GGNCC	2 cut(s)	483, 507
PstI	CTGCAG	1 cut(s)	338
PvuI	CGATCG	1 cut(s)	501
RsaI	GTAC	5 cut(s)	171, 330, 419, 440, 605
RsaNI	GTAC	5 cut(s)	170, 329, 418, 439, 604
RseI	CAYNNNNRTG	1 cut(s)	634
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	6 cut(s)	84, 177, 180, 183, 357, 646
Sau3AI	GATC	5 cut(s)	149, 268, 494, 498, 660
Sau96I	GGNCC	2 cut(s)	483, 507
ScaI	AGTACT	1 cut(s)	440
ScrFI	CCNGG	7 cut(s)	213, 252, 543, 544, 589, 608, 609
SduI	GDGCHC	1 cut(s)	618
SetI	ASST	6 cut(s)	120, 134, 175, 202, 327, 585
SfaNI	GCATC	1 cut(s)	149
SfcI	CTRYAG	1 cut(s)	334
SmaI	CCCGGG	2 cut(s)	544, 609
SmiMI	CAYNNNNRTG	1 cut(s)	634
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	2 cut(s)	377, 390
SsiI	CCGC	6 cut(s)	9, 27, 272, 320, 527, 645
StyD4I	CCNGG	7 cut(s)	211, 250, 541, 542, 587, 606, 607
StyI	CCWWGG	2 cut(s)	90, 230
TaaI	ACNGT	2 cut(s)	40, 169
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	2 cut(s)	237, 497
TasI	AATT	2 cut(s)	377, 390
TatI	WGTACW	2 cut(s)	328, 438
TauI	GCSGC	1 cut(s)	648
TfiI	GAWTC	1 cut(s)	363
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	1 cut(s)	338
TseI	GCWGC	5 cut(s)	83, 176, 179, 182, 356
TspDTI	ATGAA	2 cut(s)	273, 358
TspMI	CCCGGG	2 cut(s)	542, 607
TspRI	CASTG	1 cut(s)	338
XapI	RAATTY	1 cut(s)	377
XmaI	CCCGGG	2 cut(s)	542, 607
ZrmI	AGTACT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.