Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008861

Physical Location & Seq

Genomic Coordinates Forward (+)

6987079 .. 6988662

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGAAGAAACATACAAGAAAAAGACATCATGAATGGCAAACTCAAGGATAGAGTAAAAAGTGAACTCCAAGAATTGGCTTCAGGTTCTTCACCAAACTCACCAACTCAAGATGGAAGTCCAAGAAAAGATGGGAGACCAAGCAGCATGATAATTAAGAAGGCAAACACCATGTTTCCTGCTCACTTGATAGCAGAAGCCATATCCTCACTCAGAGGCCTTGATCTGAGATGGTCAGGTCCAATCACACCAAGTGAGATGCAATATGTTCAGCAATACATCTTCGCAAAGTACCCAGAATACTGCAATGGATTAGTGGAGGATGTCGAAAAACTAGACATTGATAATCTTTCGATCAACGAAGAATCATCAGGAACTCCACCCCATGACAATCAGCTCAAGTCACCCAAGAGTGTGGCACCAAAAGAGTTGTCCCCATTCAGCAGCACTCACTCAGACCTGGACAGGACTCAGATGGAACCCTCAAGACTTTTAGACATCCTGACCAAGAAATCTTCGTTCCAAGGGAACTTTGTATCCATTCCTGAGGTCCAAGCAAGGAATAGGGCATTGAAGCACTGTGGGTTACAAGAGGAGGATTATTTAGTCCTTTTCATGGCAAATTACAAAGATGCTATGGTGATGATCGGTGAGAGCTACCCTTTCTTCAGAGGAAATTACTATATGACCATTGTGGGTGAGGAGACTGATTCCATAAAGGAATTTGCAAGTACCAAAGAATCTAGGGTTATTTCAGCACCAGAAACTTGGTTGGATTTGAGGATAAAAGGGTCACAACTTAGCCAGTACTTTAGGAGAAAGTGCAAGTATAGTCCCAAGGGACTGTTTTCCTATCCGGCCACTGTCAATGGAGCTAAATACTCCATGCATTGGATCTCGGAGGCACACAGGAACTCATGGCATGTCCTGCTTGACGCAACCGGCTTGGTTTTGGGGGAGGACCGGTTAGCACTGGCGCTGTACAGGCCAGATTTTGTGCTGTGCACCCTCAACAATACACACACTCAGACCCAGCCATCCAACATCACTTGCCTCTTGGTCAGGAGAAAAACATTTGATACTATGACTAACCCAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

367

Amino Acids

41.37

Weight (kDa)

7.64

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008861)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23710 FvH4_4g23710
malus_domestica	MD13G1119700.v1.1 MD16G1119900.v1.1
prunus_persica	Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1
pyrus_communis	pycom16g10240
rosa_chinensis	RchiOBHm_Chr4g0430181
rosa_laevigata	RLG00000006998
rosa_multiflora	Rmu_co8216684.1_g000001 Rmu_sc0004036.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371980
rosa_rugosa	Rorug04G0241100 Rorug04G0241200 Rorug04G0241300
rosa_samantha	Rh4AG297900 Rh4BG304300 Rh4CG319800 Rh4DG301800
rosa_wichuraiana	Rw4G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	418
AccB7I	CCANNNNNTGG	2 cut(s)	76, 891
AclWI	GGATC	1 cut(s)	902
AcoI	YGGCCR	1 cut(s)	858
AcsI	RAATTY	1 cut(s)	722
AcuI	CTGAAG	2 cut(s)	66, 652
AdeI	CACNNNGTG	1 cut(s)	254
AfaI	GTAC	4 cut(s)	293, 733, 809, 983
AfiI	CCNNNNNNNGG	3 cut(s)	76, 616, 891
AgeI	ACCGGT	1 cut(s)	963
AgsI	TTSAA	1 cut(s)	574
AjnI	CCWGG	1 cut(s)	459
AloI	GAACNNNNNNTCC	2 cut(s)	521, 553
AluBI	AGCT	3 cut(s)	397, 657, 875
AluI	AGCT	3 cut(s)	397, 657, 875
Alw21I	GWGCWC	1 cut(s)	1007
Alw26I	GTCTC	2 cut(s)	130, 698
Alw44I	GTGCAC	1 cut(s)	1003
AlwI	GGATC	1 cut(s)	902
AoxI	GGCC	3 cut(s)	217, 858, 986
ApaLI	GTGCAC	1 cut(s)	1003
ApeKI	GCWGC	2 cut(s)	144, 444
ApoI	RAATTY	1 cut(s)	722
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AsiGI	ACCGGT	1 cut(s)	963
AspLEI	GCGC	1 cut(s)	979
AspS9I	GGNCC	3 cut(s)	239, 550, 961
AsuHPI	GGTGA	6 cut(s)	84, 93, 396, 652, 662, 710
AvaII	GGWCC	3 cut(s)	239, 550, 961
AxyI	CCTNAGG	1 cut(s)	546
BaeGI	GKGCMC	1 cut(s)	1007
BanI	GGYRCC	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	1007
BbvI	GCAGC	2 cut(s)	156, 456
BccI	CCATC	5 cut(s)	107, 125, 225, 469, 1045
BciT130I	CCWGG	1 cut(s)	461
BciVI	GTATCC	1 cut(s)	547
BcoDI	GTCTC	2 cut(s)	130, 698
BfaI	CTAG	3 cut(s)	335, 744, 1099
BfoI	RGCGCY	1 cut(s)	980
BfuI	GTATCC	1 cut(s)	547
BisI	GCNGC	2 cut(s)	145, 445
BlsI	GCNGC	2 cut(s)	146, 446
BmcAI	AGTACT	1 cut(s)	809
Bme1390I	CCNGG	1 cut(s)	461
Bme18I	GGWCC	3 cut(s)	239, 550, 961
BmgT120I	GGNCC	3 cut(s)	239, 550, 961
BmiI	GGNNCC	2 cut(s)	420, 480
BmrFI	CCNGG	1 cut(s)	461
BmsI	GCATC	2 cut(s)	249, 622
BpuEI	CTTGAG	4 cut(s)	29, 93, 383, 469
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	2 cut(s)	523, 837
BsaWI	WCCGGW	1 cut(s)	963
BsaXI	ACNNNNNCTCC	2 cut(s)	950, 980
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 616, 891
Bse118I	RCCGGY	2 cut(s)	941, 963
Bse1I	ACTGG	2 cut(s)	805, 978
Bse21I	CCTNAGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	461
BseDI	CCNNGG	2 cut(s)	523, 837
BseGI	GGATG	3 cut(s)	328, 498, 1037
BseLI	CCNNNNNNNGG	3 cut(s)	76, 616, 891
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	6 cut(s)	218, 226, 468, 485, 537, 1040
BseNI	ACTGG	2 cut(s)	805, 978
BseRI	GAGGAG	2 cut(s)	608, 716
BseSI	GKGCMC	1 cut(s)	1007
BseXI	GCAGC	2 cut(s)	156, 456
BseYI	CCCAGC	2 cut(s)	1032, 1093
BshFI	GGCC	3 cut(s)	219, 860, 988
BshNI	GGYRCC	1 cut(s)	418
BshTI	ACCGGT	1 cut(s)	963
BsiHKAI	GWGCWC	1 cut(s)	1007
BsiSI	CCGG	3 cut(s)	857, 942, 964
BslFI	GGGAC	3 cut(s)	418, 819, 855
BslI	CCNNNNNNNGG	3 cut(s)	76, 616, 891
BsmAI	GTCTC	2 cut(s)	130, 698
BsmFI	GGGAC	3 cut(s)	418, 819, 855
BsnI	GGCC	3 cut(s)	219, 860, 988
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	1007
Bsp1407I	TGTACA	1 cut(s)	981
Bsp143I	GATC	4 cut(s)	223, 354, 645, 894
BspANI	GGCC	3 cut(s)	219, 860, 988
BspCNI	CTCAG	6 cut(s)	219, 225, 467, 484, 538, 1039
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	420, 480
BspPI	GGATC	1 cut(s)	902
BspT107I	GGYRCC	1 cut(s)	418
BspTNI	GGTCTC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	2 cut(s)	941, 963
BsrGI	TGTACA	1 cut(s)	981
BsrI	ACTGG	2 cut(s)	805, 978
BssAI	RCCGGY	2 cut(s)	941, 963
BssECI	CCNNGG	2 cut(s)	523, 837
BssMI	GATC	4 cut(s)	223, 354, 645, 894
BssT1I	CCWWGG	2 cut(s)	523, 837
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	3 cut(s)	581, 846, 865
BstAPI	GCANNNNNTGC	1 cut(s)	928
BstAUI	TGTACA	1 cut(s)	981
BstDEI	CTNAG	7 cut(s)	212, 227, 454, 471, 546, 800, 1026
BstF5I	GGATG	3 cut(s)	328, 498, 1037
BstH2I	RGCGCY	1 cut(s)	980
BstHHI	GCGC	1 cut(s)	979
BstKTI	GATC	4 cut(s)	226, 357, 648, 897
BstMAI	GTCTC	2 cut(s)	130, 698
BstMBI	GATC	4 cut(s)	223, 354, 645, 894
BstMWI	GCNNNNNNNGC	2 cut(s)	928, 985
BstNI	CCWGG	1 cut(s)	461
BstNSI	RCATGY	1 cut(s)	926
BstSCI	CCNGG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	1007
BstV1I	GCAGC	2 cut(s)	156, 456
BstX2I	RGATCY	1 cut(s)	894
BstXI	CCANNNNNNTGG	2 cut(s)	415, 768
BstYI	RGATCY	1 cut(s)	894
Bsu36I	CCTNAGG	1 cut(s)	546
BsuI	GTATCC	1 cut(s)	547
BsuRI	GGCC	3 cut(s)	219, 860, 988
BtsCI	GGATG	3 cut(s)	328, 498, 1037
BtsIMutI	CAGTG	3 cut(s)	577, 861, 971
CciI	TCATGA	1 cut(s)	30
CfoI	GCGC	1 cut(s)	979
Cfr10I	RCCGGY	2 cut(s)	941, 963
Cfr13I	GGNCC	3 cut(s)	239, 550, 961
CseI	GACGC	1 cut(s)	944
Csp6I	GTAC	4 cut(s)	292, 732, 808, 982
CspAI	ACCGGT	1 cut(s)	963
CviAII	CATG	8 cut(s)	31, 148, 172, 386, 616, 886, 918, 923
CviQI	GTAC	4 cut(s)	292, 732, 808, 982
DdeI	CTNAG	7 cut(s)	212, 227, 454, 471, 546, 800, 1026
DpnI	GATC	4 cut(s)	225, 356, 647, 896
DpnII	GATC	4 cut(s)	223, 354, 645, 894
DraIII	CACNNNGTG	1 cut(s)	254
EaeI	YGGCCR	1 cut(s)	858
Eco130I	CCWWGG	2 cut(s)	523, 837
Eco147I	AGGCCT	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	130
Eco47I	GGWCC	3 cut(s)	239, 550, 961
Eco57I	CTGAAG	2 cut(s)	66, 652
Eco81I	CCTNAGG	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	459
EcoT14I	CCWWGG	2 cut(s)	523, 837
EcoT22I	ATGCAT	1 cut(s)	891
ErhI	CCWWGG	2 cut(s)	523, 837
FaeI	CATG	8 cut(s)	34, 151, 175, 389, 619, 889, 921, 926
FaqI	GGGAC	3 cut(s)	418, 819, 855
FatI	CATG	8 cut(s)	30, 147, 171, 385, 615, 885, 917, 922
Fnu4HI	GCNGC	2 cut(s)	145, 445
FokI	GGATG	3 cut(s)	335, 485, 1024
Fsp4HI	GCNGC	2 cut(s)	145, 445
FspBI	CTAG	3 cut(s)	335, 744, 1099
GlaI	GCGC	1 cut(s)	978
GluI	GCNGC	2 cut(s)	145, 445
GsaI	CCCAGC	2 cut(s)	1036, 1097
HaeII	RGCGCY	1 cut(s)	980
HaeIII	GGCC	3 cut(s)	219, 860, 988
HapII	CCGG	3 cut(s)	857, 942, 964
HgaI	GACGC	1 cut(s)	944
HhaI	GCGC	1 cut(s)	979
Hin1II	CATG	8 cut(s)	34, 151, 175, 389, 619, 889, 921, 926
Hin6I	GCGC	1 cut(s)	977
HinP1I	GCGC	1 cut(s)	977
HinfI	GANTC	4 cut(s)	365, 469, 710, 740
HpaII	CCGG	3 cut(s)	857, 942, 964
HphI	GGTGA	6 cut(s)	84, 93, 396, 652, 662, 710
Hpy166II	GTNNAC	2 cut(s)	65, 1005
Hpy188I	TCNGA	7 cut(s)	215, 228, 457, 474, 671, 901, 1029
Hpy188III	TCNNGA	7 cut(s)	31, 110, 372, 486, 502, 545, 1063
Hpy8I	GTNNAC	2 cut(s)	65, 1005
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	3 cut(s)	581, 846, 865
HpyCH4V	TGCA	6 cut(s)	262, 306, 728, 825, 889, 1005
HpyF10VI	GCNNNNNNNGC	2 cut(s)	928, 985
HpyF3I	CTNAG	7 cut(s)	212, 227, 454, 471, 546, 800, 1026
Hsp92II	CATG	8 cut(s)	34, 151, 175, 389, 619, 889, 921, 926
HspAI	GCGC	1 cut(s)	977
Kzo9I	GATC	4 cut(s)	223, 354, 645, 894
LmnI	GCTCC	1 cut(s)	872
Lsp1109I	GCAGC	2 cut(s)	156, 456
LweI	GCATC	2 cut(s)	249, 622
MaeI	CTAG	3 cut(s)	335, 744, 1099
MaeIII	GTNAC	3 cut(s)	402, 585, 792
MalI	GATC	4 cut(s)	225, 356, 647, 896
MboI	GATC	4 cut(s)	223, 354, 645, 894
MboII	GAAGA	6 cut(s)	18, 81, 274, 374, 507, 658
MflI	RGATCY	1 cut(s)	894
MhlI	GDGCHC	1 cut(s)	1007
MluCI	AATT	5 cut(s)	74, 153, 622, 676, 722
MlyI	GAGTC	1 cut(s)	463
MmeI	TCCRAC	2 cut(s)	753, 1065
Mph1103I	ATGCAT	1 cut(s)	891
MseI	TTAA	1 cut(s)	156
MspI	CCGG	3 cut(s)	857, 942, 964
MspR9I	CCNGG	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	461
MwoI	GCNNNNNNNGC	2 cut(s)	928, 985
NdeII	GATC	4 cut(s)	223, 354, 645, 894
NlaIII	CATG	8 cut(s)	34, 151, 175, 389, 619, 889, 921, 926
NlaIV	GGNNCC	2 cut(s)	420, 480
NmuCI	GTSAC	2 cut(s)	402, 792
NsiI	ATGCAT	1 cut(s)	891
NspI	RCATGY	1 cut(s)	926
PagI	TCATGA	1 cut(s)	30
PceI	AGGCCT	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	365, 710, 740
PflMI	CCANNNNNTGG	2 cut(s)	76, 891
PinAI	ACCGGT	1 cut(s)	963
PkrI	GCNGC	2 cut(s)	146, 446
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	459
PspFI	CCCAGC	2 cut(s)	1032, 1093
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	420, 480
PspPI	GGNCC	3 cut(s)	239, 550, 961
PsuI	RGATCY	1 cut(s)	894
RsaI	GTAC	4 cut(s)	293, 733, 809, 983
RsaNI	GTAC	4 cut(s)	292, 732, 808, 982
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	145, 445
Sau3AI	GATC	4 cut(s)	223, 354, 645, 894
Sau96I	GGNCC	3 cut(s)	239, 550, 961
ScaI	AGTACT	1 cut(s)	809
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	1007
SetI	ASST	7 cut(s)	88, 241, 399, 462, 552, 659, 877
SfaNI	GCATC	2 cut(s)	249, 622
SinI	GGWCC	3 cut(s)	239, 550, 961
SmlI	CTYRAG	4 cut(s)	44, 108, 398, 484
SmoI	CTYRAG	4 cut(s)	44, 108, 398, 484
Sse9I	AATT	5 cut(s)	74, 153, 622, 676, 722
SseBI	AGGCCT	1 cut(s)	219
SspMI	CTAG	3 cut(s)	335, 744, 1099
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	459
StyI	CCWWGG	2 cut(s)	523, 837
TaaI	ACNGT	3 cut(s)	581, 846, 865
TaqI	TCGA	2 cut(s)	327, 353
TasI	AATT	5 cut(s)	74, 153, 622, 676, 722
TatI	WGTACW	2 cut(s)	807, 981
TfiI	GAWTC	3 cut(s)	365, 710, 740
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	3 cut(s)	584, 868, 978
TseFI	GTSAC	2 cut(s)	402, 792
TseI	GCWGC	2 cut(s)	144, 444
Tsp45I	GTSAC	2 cut(s)	402, 792
TspDTI	ATGAA	2 cut(s)	47, 604
TspRI	CASTG	3 cut(s)	584, 868, 978
Van91I	CCANNNNNTGG	2 cut(s)	76, 891
VneI	GTGCAC	1 cut(s)	1003
VpaK11BI	GGWCC	3 cut(s)	239, 550, 961
XapI	RAATTY	1 cut(s)	722
XceI	RCATGY	1 cut(s)	926
XspI	CTAG	3 cut(s)	335, 744, 1099
ZrmI	AGTACT	1 cut(s)	809
Zsp2I	ATGCAT	1 cut(s)	891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.