pycom16g11350

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011556
Physical Location & Seq
Reverse (-)
7914505 .. 7916656
2152 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 984 bp
ATGAGAAATAACGACATGGTCAGAACGCAGCAGGAAAGAATGCACGCAAATGCTCTGCCTCAGCATTCTGACTCCGACCGTCGGATTATTGACGCCCCTGGCCCGTCCCTGCTGCTTTATCAAGTTTGGAAAGGAAACAATAAATTTTGCTTTAATGGAAGAATTATATTGGGTCCAGATTCGAGGTCATTATTCCTTACTGTGTCCCTAATTGTGGTTCCGGTGATCCTGTTTTGCGCCTTTCTTTCGCAAGGACTAATTCATCAACTCCCGCTCTACATTGGCATTCTTATTGTGGCTTTATGTCCAGTATTAGCAGTATATGTTGTGATTCTTCTCTTGATCACATCTGCAAGAGATCCTGGCATTATTCCTCGCAGCTTGCATCCTCCAGAACCAGAAGATGACGGCTATGTCTCTAGTATCTCTTCTGATTGGCCAGGAAGTCAGAATGGGCCTCCAGGCATACCACCCACAAAAGAAGTTATCATTAACGGCGTGATAGTTAAAACCAAATATTGTCAAACATGCATGCTATATCGCCCACCCCGATGCTCTCACTGCTCTATATGCAACAACTGCGTTGATCGTTTTGATCACCATTGCCCATGGGTGGGGCAATGCATTGGCAAAAGGAATTACAGATTCTTTTTCATGTTTGTGTGCTCCACGACCGTTCTGTGTCTCTATGTCTTTGCGTTCTGCTGGGTAAACATCATGCAGATAATGGATTATTACCATTGCAGTCTCTGGAGAGCTTTTTCAAAGTCACCTGTTTCAGGAGTTCTAATTCTCTATACATTTGGAGCTGCTTGGTTTGTTGGAGGTCTCACAGGATTCCATATCTATTTAATCCTCACTAATCAGACAACATATGAAAACTTTCGGTATCGGTACAATCTGAAGATGAACCCTTACAATCGTGGGTGTTTTAGCAATATTACGGAAGTCTTCTTCTCTGAAATTCCGAGATCTATAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

328

Amino Acids

37.28

Weight (kDa)

8.75

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 170 - 296 1.4e-37 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 413
AccBSI CCGCTC 1 cut(s) 274
AciI CCGC 1 cut(s) 272
AclWI GGATC 2 cut(s) 220, 353
AcoI YGGCCR 1 cut(s) 437
AcsI RAATTY 2 cut(s) 143, 963
AcuI CTGAAG 1 cut(s) 923
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 1 cut(s) 896
AfiI CCNNNNNNNGG 5 cut(s) 81, 214, 613, 614, 779
AgsI TTSAA 1 cut(s) 765
AjnI CCWGG 4 cut(s) 97, 361, 439, 460
AluBI AGCT 3 cut(s) 381, 758, 809
AluI AGCT 3 cut(s) 381, 758, 809
Alw21I GWGCWC 1 cut(s) 668
Alw26I GTCTC 4 cut(s) 421, 689, 752, 833
AlwI GGATC 2 cut(s) 220, 353
AlwNI CAGNNNCTG 1 cut(s) 750
AoxI GGCC 3 cut(s) 100, 437, 455
ApeKI GCWGC 4 cut(s) 28, 112, 378, 809
ApoI RAATTY 2 cut(s) 143, 963
Asp700I GAANNNNTTC 1 cut(s) 882
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 3 cut(s) 101, 173, 455
AsuHPI GGTGA 3 cut(s) 235, 590, 762
AvaII GGWCC 1 cut(s) 173
BalI TGGCCA 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 943
Bbv12I GWGCWC 1 cut(s) 668
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 4 cut(s) 40, 99, 390, 796
BceAI ACGGC 2 cut(s) 424, 511
BciT130I CCWGG 4 cut(s) 99, 363, 441, 462
BclI TGATCA 2 cut(s) 342, 595
BcoDI GTCTC 4 cut(s) 421, 689, 752, 833
BfaI CTAG 1 cut(s) 420
BglII AGATCT 1 cut(s) 971
BisI GCNGC 4 cut(s) 29, 113, 379, 810
BlsI GCNGC 4 cut(s) 30, 114, 380, 811
Bme1390I CCNGG 4 cut(s) 99, 363, 441, 462
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 3 cut(s) 101, 173, 455
BmiI GGNNCC 2 cut(s) 174, 219
BmrFI CCNGG 4 cut(s) 99, 363, 441, 462
BmsI GCATC 2 cut(s) 394, 542
BpiI GAAGAC 1 cut(s) 943
BpmI CTGGAG 3 cut(s) 375, 444, 772
Bpu10I CCTNAGC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 833
BsaJI CCNNGG 2 cut(s) 97, 608
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 5 cut(s) 81, 214, 613, 614, 779
Bse1I ACTGG 1 cut(s) 308
Bse3DI GCAATG 3 cut(s) 601, 626, 739
BseBI CCWGG 4 cut(s) 99, 363, 441, 462
BseDI CCNNGG 2 cut(s) 97, 608
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 5 cut(s) 81, 214, 613, 614, 779
BseMI GCAATG 3 cut(s) 601, 626, 739
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 308
BseXI GCAGC 4 cut(s) 40, 99, 390, 796
BseYI CCCAGC 1 cut(s) 705
Bsh1285I CGRYCG 2 cut(s) 79, 675
BshFI GGCC 3 cut(s) 102, 439, 457
BsiEI CGRYCG 2 cut(s) 79, 675
BsiHKAI GWGCWC 1 cut(s) 668
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 2 cut(s) 91, 190
BslI CCNNNNNNNGG 5 cut(s) 81, 214, 613, 614, 779
BsmAI GTCTC 4 cut(s) 421, 689, 752, 833
BsmFI GGGAC 2 cut(s) 91, 190
BsmI GAATGC 3 cut(s) 45, 64, 285
BsnI GGCC 3 cut(s) 102, 439, 457
Bso31I GGTCTC 1 cut(s) 833
Bsp1286I GDGCHC 1 cut(s) 668
Bsp143I GATC 6 cut(s) 225, 342, 358, 586, 595, 971
Bsp19I CCATGG 1 cut(s) 608
BspACI CCGC 1 cut(s) 272
BspANI GGCC 3 cut(s) 102, 439, 457
BspCNI CTCAG 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 174, 219
BspPI GGATC 2 cut(s) 220, 353
BspTNI GGTCTC 1 cut(s) 833
BsrBI CCGCTC 1 cut(s) 274
BsrDI GCAATG 3 cut(s) 601, 626, 739
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 97, 608
BssMI GATC 6 cut(s) 225, 342, 358, 586, 595, 971
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 608
Bst2UI CCWGG 4 cut(s) 99, 363, 441, 462
Bst4CI ACNGT 3 cut(s) 80, 202, 676
Bst6I CTCTTC 1 cut(s) 433
BstACI GRCGYC 1 cut(s) 93
BstAPI GCANNNNNTGC 1 cut(s) 579
BstC8I GCNNGC 3 cut(s) 45, 383, 533
BstDEI CTNAG 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 608
BstENI CCTNNNNNAGG 1 cut(s) 777
BstF5I GGATG 1 cut(s) 385
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 6 cut(s) 228, 345, 361, 589, 598, 974
BstMAI GTCTC 4 cut(s) 421, 689, 752, 833
BstMBI GATC 6 cut(s) 225, 342, 358, 586, 595, 971
BstMCI CGRYCG 2 cut(s) 79, 675
BstMWI GCNNNNNNNGC 3 cut(s) 561, 570, 579
BstNI CCWGG 4 cut(s) 99, 363, 441, 462
BstNSI RCATGY 2 cut(s) 531, 535
BstSCI CCNGG 4 cut(s) 97, 361, 439, 460
BstV1I GCAGC 4 cut(s) 40, 99, 390, 796
BstV2I GAAGAC 1 cut(s) 943
BstX2I RGATCY 2 cut(s) 358, 971
BstYI RGATCY 2 cut(s) 358, 971
BsuRI GGCC 3 cut(s) 102, 439, 457
BtgI CCRYGG 1 cut(s) 608
BtsCI GGATG 1 cut(s) 385
BtsI GCAGTG 1 cut(s) 559
BtsIMutI CAGTG 1 cut(s) 559
Cac8I GCNNGC 3 cut(s) 45, 383, 533
CaiI CAGNNNCTG 1 cut(s) 750
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 3 cut(s) 101, 173, 455
CseI GACGC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 895
CviAII CATG 6 cut(s) 16, 528, 532, 609, 655, 718
CviJI RGCY 8 cut(s) 102, 299, 381, 411, 439, 457, 758, 809
CviKI_1 RGCY 8 cut(s) 102, 299, 381, 411, 439, 457, 758, 809
CviQI GTAC 1 cut(s) 895
DdeI CTNAG 1 cut(s) 60
DpnI GATC 6 cut(s) 227, 344, 360, 588, 597, 973
DpnII GATC 6 cut(s) 225, 342, 358, 586, 595, 971
DrdI GACNNNNNNGTC 1 cut(s) 413
DseDI GACNNNNNNGTC 1 cut(s) 413
EaeI YGGCCR 1 cut(s) 437
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
Eco130I CCWWGG 1 cut(s) 608
Eco31I GGTCTC 1 cut(s) 833
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 923
EcoNI CCTNNNNNAGG 1 cut(s) 777
EcoRII CCWGG 4 cut(s) 97, 361, 439, 460
EcoT14I CCWWGG 1 cut(s) 608
EcoT22I ATGCAT 2 cut(s) 533, 626
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 6 cut(s) 19, 531, 535, 612, 658, 721
FaqI GGGAC 2 cut(s) 91, 190
FatI CATG 6 cut(s) 15, 527, 531, 608, 654, 717
FauI CCCGC 1 cut(s) 279
FauNDI CATATG 1 cut(s) 874
FbaI TGATCA 2 cut(s) 342, 595
Fnu4HI GCNGC 4 cut(s) 29, 113, 379, 810
FokI GGATG 1 cut(s) 372
Fsp4HI GCNGC 4 cut(s) 29, 113, 379, 810
FspBI CTAG 1 cut(s) 420
GlaI GCGC 1 cut(s) 238
GluI GCNGC 4 cut(s) 29, 113, 379, 810
GsaI CCCAGC 1 cut(s) 709
GsuI CTGGAG 3 cut(s) 375, 444, 772
HaeIII GGCC 3 cut(s) 102, 439, 457
HapII CCGG 1 cut(s) 221
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 6 cut(s) 19, 531, 535, 612, 658, 721
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 5 cut(s) 71, 179, 331, 645, 837
HpaII CCGG 1 cut(s) 221
HphI GGTGA 3 cut(s) 235, 590, 762
Hpy166II GTNNAC 1 cut(s) 712
Hpy188III TCNNGA 5 cut(s) 176, 340, 392, 751, 780
Hpy8I GTNNAC 1 cut(s) 712
Hpy99I CGWCG 1 cut(s) 84
HpyCH4III ACNGT 3 cut(s) 80, 202, 676
HpyCH4V TGCA 8 cut(s) 43, 353, 385, 531, 573, 624, 721, 744
HpyF10VI GCNNNNNNNGC 3 cut(s) 561, 570, 579
HpyF3I CTNAG 1 cut(s) 60
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 6 cut(s) 19, 531, 535, 612, 658, 721
HspAI GCGC 1 cut(s) 237
Ksp22I TGATCA 2 cut(s) 342, 595
Kzo9I GATC 6 cut(s) 225, 342, 358, 586, 595, 971
LmnI GCTCC 2 cut(s) 671, 806
Lsp1109I GCAGC 4 cut(s) 40, 99, 390, 796
LweI GCATC 2 cut(s) 394, 542
MaeI CTAG 1 cut(s) 420
MaeIII GTNAC 1 cut(s) 768
MalI GATC 6 cut(s) 227, 344, 360, 588, 597, 973
MbiI CCGCTC 1 cut(s) 274
MboI GATC 6 cut(s) 225, 342, 358, 586, 595, 971
MboII GAAGA 7 cut(s) 171, 326, 413, 420, 916, 943, 946
MflI RGATCY 2 cut(s) 358, 971
MhlI GDGCHC 1 cut(s) 668
MlsI TGGCCA 1 cut(s) 439
MluCI AATT 7 cut(s) 143, 162, 210, 258, 637, 789, 963
MluNI TGGCCA 1 cut(s) 439
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 3 cut(s) 62, 99, 802
MnlI CCTC 7 cut(s) 69, 177, 384, 399, 468, 818, 866
Mox20I TGGCCA 1 cut(s) 439
Mph1103I ATGCAT 2 cut(s) 533, 626
MroXI GAANNNNTTC 1 cut(s) 882
MscI TGGCCA 1 cut(s) 439
MseI TTAA 4 cut(s) 153, 492, 507, 851
MslI CAYNNNNRTG 3 cut(s) 48, 550, 659
Msp20I TGGCCA 1 cut(s) 439
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 4 cut(s) 99, 363, 441, 462
Mva1269I GAATGC 3 cut(s) 45, 64, 285
MvaI CCWGG 4 cut(s) 99, 363, 441, 462
MwoI GCNNNNNNNGC 3 cut(s) 561, 570, 579
NcoI CCATGG 1 cut(s) 608
NdeI CATATG 1 cut(s) 874
NdeII GATC 6 cut(s) 225, 342, 358, 586, 595, 971
NlaIII CATG 6 cut(s) 19, 531, 535, 612, 658, 721
NlaIV GGNNCC 2 cut(s) 174, 219
NmuCI GTSAC 1 cut(s) 768
NsiI ATGCAT 2 cut(s) 533, 626
NspI RCATGY 2 cut(s) 531, 535
PaeI GCATGC 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 547
PctI GAATGC 3 cut(s) 45, 64, 285
PdmI GAANNNNTTC 1 cut(s) 882
PfeI GAWTC 4 cut(s) 179, 331, 645, 837
PflFI GACNNNGTC 1 cut(s) 17
PkrI GCNGC 4 cut(s) 30, 114, 380, 811
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Psp6I CCWGG 4 cut(s) 97, 361, 439, 460
PspFI CCCAGC 1 cut(s) 705
PspGI CCWGG 4 cut(s) 97, 361, 439, 460
PspN4I GGNNCC 2 cut(s) 174, 219
PspPI GGNCC 3 cut(s) 101, 173, 455
PstNI CAGNNNCTG 1 cut(s) 750
PsuI RGATCY 2 cut(s) 358, 971
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 1 cut(s) 896
RsaNI GTAC 1 cut(s) 895
RseI CAYNNNNRTG 3 cut(s) 48, 550, 659
SaqAI TTAA 4 cut(s) 153, 492, 507, 851
SatI GCNGC 4 cut(s) 29, 113, 379, 810
Sau3AI GATC 6 cut(s) 225, 342, 358, 586, 595, 971
Sau96I GGNCC 3 cut(s) 101, 173, 455
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 4 cut(s) 99, 363, 441, 462
SduI GDGCHC 1 cut(s) 668
SetI ASST 6 cut(s) 188, 383, 760, 775, 811, 829
SfaNI GCATC 2 cut(s) 394, 542
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 3 cut(s) 48, 550, 659
SphI GCATGC 1 cut(s) 535
Sse9I AATT 7 cut(s) 143, 162, 210, 258, 637, 789, 963
SsiI CCGC 1 cut(s) 272
SspI AATATT 2 cut(s) 518, 940
SspMI CTAG 1 cut(s) 420
StyD4I CCNGG 4 cut(s) 97, 361, 439, 460
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 3 cut(s) 80, 202, 676
TaqI TCGA 1 cut(s) 182
TasI AATT 7 cut(s) 143, 162, 210, 258, 637, 789, 963
TfiI GAWTC 4 cut(s) 179, 331, 645, 837
Tru1I TTAA 4 cut(s) 153, 492, 507, 851
Tru9I TTAA 4 cut(s) 153, 492, 507, 851
TscAI CASTG 1 cut(s) 566
TseFI GTSAC 1 cut(s) 768
TseI GCWGC 4 cut(s) 28, 112, 378, 809
Tsp45I GTSAC 1 cut(s) 768
TspDTI ATGAA 4 cut(s) 251, 643, 891, 923
TspGWI ACGGA 1 cut(s) 959
TspRI CASTG 1 cut(s) 566
Tth111I GACNNNGTC 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 173
XagI CCTNNNNNAGG 1 cut(s) 777
XapI RAATTY 2 cut(s) 143, 963
XceI RCATGY 2 cut(s) 531, 535
XmnI GAANNNNTTC 1 cut(s) 882
XspI CTAG 1 cut(s) 420
Zsp2I ATGCAT 2 cut(s) 533, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.